Clone Sequence Records
BO07612.3prime Sequence
933 bp (771 high quality bases) assembled on 2006-01-06
> BO07612.3prime
ATGGTCTAGAAAGCTTGCTTTTAAATTACAATCGGATGCTAAACGTGCTT
TAGATTCTTTGGGAATGTTGATTGTGCTACTCGTGTAATGGCTGTGAACG
ACATCCTTTGGCGTGGACACATACTGATGGGACATGGCATTGTCCGTGAT
TATTTTGCGCACCACTTCCTCAACCGTTGGCGCCGTCGCCTCCAAGTCCG
CTTGGCTCTTGTTGTCTAGGTTGACGAGAGTCAGTGGCTGATCGGAATGC
ATTACGGAATCCATGCCGCCCTTGGCATTGCAGATGTCCAGTACCCAGGA
CACCACAAAGAAGCAGGCGGCGTTCATCGGAAAAGCCCGGATCAAGGTGG
AGTTTAGACCGCGAAAGAAGTACTGCGGTCCCTCGTTCCTAAAGCCCTTC
ATGGCACAGTCGATGAAGCCATTGTATTTGGCATTCGCGCCCAGGGCATC
GGCCTGCATGTGGGTCTTCACCACGTCGATGGGGTAGCACGCCAACCAGG
ACGACATGCCAGCACATCCGCCGGCCATTAGAGTGTACGCAACGCCGGGT
GTCTCCACTTGACGCATAAGGTACTCGAAGGACACAAAGTAGCTGGCAAA
GCCTGGAATATCCCTTAGAATGGTGGCTGTTAATCCCTTGAAGGCACCTC
TGATACCCTCCGTTTTTACTATGTACTTGAGGCAGTGAATGGGTCCAGTG
AACTTGATGCCGCTATCAACCTGCGTGGACAATTGGAGTCGCGTTTTGGC
CAACTCCATGGGCGCACACACGAAACCCTGGGCGACACCAGCGATGGAGC
CAGCGAAGAAGTGTGACGTCAGCGAATTGGGGTCATTGGACAAGCGTTGC
ACGTTTCCGTAGACCCCGAAAACGATGGCGTTCACCAATCCGATTCCTCC
CATGGGACTGCTGAATACACGATATAATCCTAT
BO07612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-PA | 1200 | CG4995-RA | 302..1197 | 914..19 | 4480 | 100 | Minus |
| CG4995-PC | 1083 | CG4995-RC | 185..1080 | 914..19 | 4480 | 100 | Minus |
| CG4995-PB | 1200 | CG4995-RB | 302..1197 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-RD | 1246 | CG4995-RD | 304..1218 | 933..19 | 4530 | 99.8 | Minus |
| CG4995-RB | 1431 | CG4995-RB | 489..1403 | 933..19 | 4530 | 99.8 | Minus |
| CG4995-RC | 1205 | CG4995-RC | 263..1177 | 933..19 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10324375..10324962 | 606..19 | 2940 | 100 | Minus |
| 2L | 23513712 | 2L | 10323979..10324310 | 933..602 | 1615 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:14:09 has no hits.
BO07612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:55 Download gff for
BO07612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-PC | 166..1083 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:14 Download gff for
BO07612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-PB | 283..1200 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:07:09 Download gff for
BO07612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RC | 263..1182 | 14..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:43 Download gff for
BO07612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RC | 263..1182 | 14..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:43 Download gff for
BO07612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10323979..10324309 | 603..933 | 99 | -> | Minus |
| 2L | 10324379..10324967 | 14..602 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:07:09 Download gff for
BO07612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10323979..10324309 | 603..933 | 99 | -> | Minus |
| arm_2L | 10324379..10324967 | 14..602 | 99 | | Minus |
BO07612.5prime Sequence
844 bp (800 high quality bases) assembled on 2006-01-06
> BO07612.5prime
GAAGTTATCAGTCGACATGTATCCAATAACGTTTATATATCGTGTCAACA
ATGATAAGGATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAA
CTAAAGGCCACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGT
AGCCGGACTCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCG
ATACCGTGAAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTAC
AAAGGCACATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCAT
AGGATTATATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGA
ACGCCATCGTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCAATGAC
CCCAATTCGCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGC
CCAGGGTTTCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAAT
TGTCCACGCAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGC
CTCAAGTACATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATT
AACAGCCACCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGT
CCTTCGAGTACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACT
CTAATGGCCGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCC
CATCGACGTGGTGAAGACCCACATGCAGGCCGATGCCCTGNGCGCGAATG
CCAAATACAATGGCTTCATCGACTGTGCCATGAAGGGCTTTAGG
BO07612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-PA | 1200 | CG4995-RA | 1..828 | 17..844 | 4121 | 99.8 | Plus |
| CG4995-PB | 1200 | CG4995-RB | 1..828 | 17..844 | 4121 | 99.8 | Plus |
| CG4995-PC | 1083 | CG4995-RC | 1..711 | 134..844 | 3536 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-RB | 1431 | CG4995-RB | 207..1034 | 17..844 | 4129 | 99.9 | Plus |
| CG4995-RA | 1417 | CG4995-RA | 193..1020 | 17..844 | 4129 | 99.9 | Plus |
| CG4995-RD | 1246 | CG4995-RD | 64..849 | 59..844 | 3919 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10323847..10324310 | 167..630 | 2320 | 100 | Plus |
| 2L | 23513712 | 2L | 10324375..10324593 | 626..844 | 1084 | 99.5 | Plus |
| 2L | 23513712 | 2L | 10323669..10323780 | 57..168 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 10322793..10322835 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:27:47 has no hits.
BO07612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:56 Download gff for
BO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-PB | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:15 Download gff for
BO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-PB | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:46 Download gff for
BO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 184..1020 | 7..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:56 Download gff for
BO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 184..1020 | 7..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:56 Download gff for
BO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10322784..10322834 | 7..58 | 92 | -> | Plus |
| 2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
| 2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
| 2L | 10324379..10324593 | 630..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:46 Download gff for
BO07612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10322784..10322834 | 7..58 | 92 | -> | Plus |
| arm_2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
| arm_2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
| arm_2L | 10324379..10324593 | 630..844 | 99 | | Plus |
BO07612.complete Sequence
1231 bp (1231 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630860
> BO07612.complete
GAAGTTATCAGTCGACATGTATCCAATAACGTTTATATATCGTGTCAACA
ATGATAAGGATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAA
CTAAAGGCCACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGT
AGCCGGACTCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCG
ATACCGTGAAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTAC
AAAGGCACATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCAT
AGGATTATATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGA
ACGCCATCGTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCAATGAC
CCCAATTCGCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGC
CCAGGGTTTCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAAT
TGTCCACGCAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGC
CTCAAGTACATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATT
AACAGCCACCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGT
CCTTCGAGTACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACT
CTAATGGCCGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCC
CATCGACGTGGTGAAGACCCACATGCAGGCCGATGCCCTGGGCGCGAATG
CCAAATACAATGGCTTCATCGACTGTGCCATGAAGGGCTTTAGGAACGAG
GGACCGCAGTACTTCTTTCGCGGTCTAAACTCCACCTTGATCCGGGCTTT
TCCGATGAACGCCGCCTGCTTCTTTGTGGTGTCCTGGGTACTGGACATCT
GCAATGCCAAGGGCGGCATGGATTCCGTAATGCATTCCGATCAGCCACTG
ACTCTCGTCAACCTAGACAACAAGAGCCAAGCGGACTTGGAGGCGACGGC
GCCAACGGTTGAGGAAGTGGTGCGCAAAATAATCACGGACAATGCCATGT
CCCATCAGTATGTGTCCACGCCAAAGGATGTCGTTCACAGCCATTACACG
AGTAGCACAATCAACATTCCCAAAGAATCTAAAGCACGTTTAGCATCCGA
TTGTAATTTAAAAGCAAGCTTTCTAGACCAT
BO07612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-RB | 1200 | CG4995-PB | 1..1197 | 17..1213 | 5985 | 100 | Plus |
| CG4995-RA | 1200 | CG4995-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
| CG4995-RD | 1083 | CG4995-PD | 1..1080 | 134..1213 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-RB | 1431 | CG4995-RB | 207..1403 | 17..1213 | 5985 | 100 | Plus |
| CG4995-RA | 1417 | CG4995-RA | 193..1389 | 17..1213 | 5985 | 100 | Plus |
| CG4995-RD | 1246 | CG4995-RD | 64..1218 | 59..1213 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10324375..10324962 | 626..1213 | 2940 | 100 | Plus |
| 2L | 23513712 | 2L | 10323847..10324310 | 167..630 | 2320 | 100 | Plus |
| 2L | 23513712 | 2L | 10323669..10323780 | 57..168 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 10322793..10322835 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:50:07 has no hits.
BO07612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:28 Download gff for
BO07612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RB | 1..1200 | 17..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:16 Download gff for
BO07612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RB | 198..1408 | 7..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:42 Download gff for
BO07612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 193..1385 | 17..1209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:28 Download gff for
BO07612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RB | 198..1408 | 7..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:02 Download gff for
BO07612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 193..1385 | 17..1209 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:02 Download gff for
BO07612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
| 2L | 10322793..10322834 | 17..58 | 100 | -> | Plus |
| 2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
| 2L | 10324379..10324958 | 630..1209 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:42 Download gff for
BO07612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10323671..10323779 | 59..167 | 100 | -> | Plus |
| arm_2L | 10322793..10322834 | 17..58 | 100 | -> | Plus |
| arm_2L | 10323848..10324309 | 168..629 | 100 | -> | Plus |
| arm_2L | 10324379..10324958 | 630..1209 | 100 | | Plus |
BO07612.pep Sequence
Translation from 16 to 1231
> BO07612.pep
MYPITFIYRVNNDKDPYRKRGSEIGDIQLKATSETFSPKMVVDFVAGLLG
GAAGVLVGHPFDTVKVHLQTDDPRNPKYKGTFHCFRTIVQRDKFIGLYRG
ISSPMGGIGLVNAIVFGVYGNVQRLSNDPNSLTSHFFAGSIAGVAQGFVC
APMELAKTRLQLSTQVDSGIKFTGPIHCLKYIVKTEGIRGAFKGLTATIL
RDIPGFASYFVSFEYLMRQVETPGVAYTLMAGGCAGMSSWLACYPIDVVK
THMQADALGANAKYNGFIDCAMKGFRNEGPQYFFRGLNSTLIRAFPMNAA
CFFVVSWVLDICNAKGGMDSVMHSDQPLTLVNLDNKSQADLEATAPTVEE
VVRKIITDNAMSHQYVSTPKDVVHSHYTSSTINIPKESKARLASDCNLKA
SFLDH
BO07612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-PB | 399 | CG4995-PB | 1..399 | 1..399 | 2095 | 100 | Plus |
| CG4995-PA | 399 | CG4995-PA | 1..399 | 1..399 | 2095 | 100 | Plus |
| CG4995-PD | 360 | CG4995-PD | 1..360 | 40..399 | 1889 | 100 | Plus |
| CG4995-PC | 360 | CG4995-PC | 1..360 | 40..399 | 1889 | 100 | Plus |
| CG3476-PA | 299 | CG3476-PA | 15..299 | 41..314 | 403 | 37.4 | Plus |
