Clone BO07617 Report

Search the DGRC for BO07617

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptPglym78-RA
Protein status:BO07617.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO07617.3prime Sequence

797 bp (796 high quality bases) assembled on 2006-01-06

> BO07617.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTTGCCCTGGGCGGCCACAGCCTCGA
TGGCCTTCTTCACGGTCTCCTCGTCGCCGAGGAACTGCATGGACACCACC
GGCTTGAAGTTCTCGTCCAGCTCGTAGACGAACGGAATGCCCGTGGGCAG
ATTTAGGGCCATGATGGCGTCCTCAGAAAGGTTGTCTAAATGCTTGACGA
TGCCACGGAGGCTGTTGCCGTGGGCAGCGATCAGGATGCGCTTGCCCTCC
TTCATCTGGGGAATGATGACGTCGTTCCAGTAGGGCAGTGTGCGTTCGAT
GGTCAGCTTGAGGGACTCGAACTGGGGGAACTCCTCGGGCTTGGGACCCT
CGGCGTAGCGGGGATCCTTGACGATGTTCTCGTAGTACGGATGGCCCGGC
TCCATCGGTGGTGGCGGGGTGTCGAAGCTGCGACGCCAGATCTGCACCTG
GGCCTCGCCGTACTTGGCGGCGGTCTCGGCCTTGTTCAGGCCAGTGAGTC
CACCGTAGTGGCGCTCGTTCAGGCGCCAAGTCTTCTGGATGGGGATCTCC
TTGTGGCCACTGGCCTTCAGGATGCTGGCCAGCGTCACCTGGGCGCGGGT
CAGCACCGAGGTGTGGGCCACATCGAACTCCAGGCCGGCATCCTTGACGG
CCTTGCCGGCGGCTAGGGCCTCCTCCTGACCCTTTTCGCTGAGGTTGGCG
TCGTACCAGCCGCAGAACTGATTCTTCTGGTTCCACTCGGACTCGCCGTG
GCGCACCATCACGATCTTGTACTTGCCGCCCATGTCGACTGATAACT

BO07617.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1721-PA 768 Pglym78-RA 1..765 783..19 3825 100 Minus
CG1721-PB 768 Pglym78-RB 1..765 783..19 3825 100 Minus
CG1721-PC 768 Pglym78-RC 1..765 783..19 3825 100 Minus
CG17645-PA 879 Pglym87-RA 265..297 630..598 165 100 Minus
CG17645-PA 879 Pglym87-RA 553..629 342..266 160 88.3 Minus
CG17645-PA 879 Pglym87-RA 367..426 528..469 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 1042 CG1721-RC 109..873 783..19 3825 100 Minus
Pglym78-RB 1022 CG1721-RB 89..853 783..19 3825 100 Minus
Pglym78-RA 1136 CG1721-RA 203..967 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29149008..29149506 681..183 2495 100 Minus
3R 32079331 3R 12231802..12232560 19..777 1215 77.3 Plus
3R 32079331 3R 29149569..29149732 182..19 820 100 Minus
3R 32079331 3R 29148450..29148554 783..679 525 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:11:27 has no hits.

BO07617.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:05 Download gff for BO07617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 15..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:28 Download gff for BO07617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 15..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:13 Download gff for BO07617.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 13..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:22 Download gff for BO07617.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 13..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:22 Download gff for BO07617.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29148442..29148552 681..791 96 -> Minus
3R 29149009..29149506 183..680 100 -> Minus
3R 29149569..29149737 13..182 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:13 Download gff for BO07617.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24974164..24974274 681..791 96 -> Minus
arm_3R 24974731..24975228 183..680 100 -> Minus
arm_3R 24975291..24975459 13..182 98   Minus

BO07617.5prime Sequence

797 bp (796 high quality bases) assembled on 2006-01-06

> BO07617.5prime
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGGCAAGCTTTCTAGACC

BO07617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1721-PA 768 Pglym78-RA 1..765 17..781 3825 100 Plus
CG1721-PB 768 Pglym78-RB 1..765 17..781 3825 100 Plus
CG1721-PC 768 Pglym78-RC 1..765 17..781 3825 100 Plus
CG17645-PA 879 Pglym87-RA 265..297 170..202 165 100 Plus
CG17645-PA 879 Pglym87-RA 553..629 458..534 160 88.3 Plus
CG17645-PA 879 Pglym87-RA 367..426 272..331 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 1042 CG1721-RC 109..873 17..781 3825 100 Plus
Pglym78-RB 1022 CG1721-RB 89..853 17..781 3825 100 Plus
Pglym78-RA 1136 CG1721-RA 203..967 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29149008..29149506 119..617 2495 100 Plus
3R 32079331 3R 12231802..12232560 781..23 1215 77.3 Minus
3R 32079331 3R 29149569..29149732 618..781 820 100 Plus
3R 32079331 3R 29148450..29148554 17..121 525 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:48:10 has no hits.

BO07617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:06 Download gff for BO07617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 17..785 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:29 Download gff for BO07617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1721-PC 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:45 Download gff for BO07617.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 9..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:32 Download gff for BO07617.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 195..972 9..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:32 Download gff for BO07617.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29148442..29148552 9..119 96 -> Plus
3R 29149009..29149506 120..617 100 -> Plus
3R 29149569..29149737 618..787 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:45 Download gff for BO07617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24975291..24975459 618..787 98   Plus
arm_3R 24974164..24974274 9..119 96 -> Plus
arm_3R 24974731..24975228 120..617 100 -> Plus

BO07617.complete Sequence

799 bp (799 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630863

> BO07617.complete
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGGCAAGCTTTCTAGACCAT

BO07617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 768 CG1721-PC 1..765 17..781 3825 100 Plus
Pglym78-RB 768 CG1721-PB 1..765 17..781 3825 100 Plus
Pglym78-RA 768 CG1721-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-RC 1042 CG1721-RC 109..873 17..781 3825 100 Plus
Pglym78-RB 1022 CG1721-RB 89..853 17..781 3825 100 Plus
Pglym78-RA 1136 CG1721-RA 203..967 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29149008..29149506 119..617 2495 100 Plus
3R 32079331 3R 12231802..12232560 781..23 1215 77.3 Minus
3R 32079331 3R 29149569..29149732 618..781 820 100 Plus
3R 32079331 3R 29148450..29148554 17..121 525 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:46:05 has no hits.

BO07617.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:10 Download gff for BO07617.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RC 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:41 Download gff for BO07617.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RC 62..839 9..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:17 Download gff for BO07617.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 203..967 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:11 Download gff for BO07617.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RC 62..839 9..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:49 Download gff for BO07617.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym78-RA 203..967 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:49 Download gff for BO07617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29148450..29148552 17..119 100 -> Plus
3R 29149009..29149506 120..617 100 -> Plus
3R 29149569..29149732 618..783 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:17 Download gff for BO07617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24974172..24974274 17..119 100 -> Plus
arm_3R 24974731..24975228 120..617 100 -> Plus
arm_3R 24975291..24975454 618..783 98   Plus

BO07617.pep Sequence

Translation from 16 to 799

> BO07617.pep
MGGKYKIVMVRHGESEWNQKNQFCGWYDANLSEKGQEEALAAGKAVKDAG
LEFDVAHTSVLTRAQVTLASILKASGHKEIPIQKTWRLNERHYGGLTGLN
KAETAAKYGEAQVQIWRRSFDTPPPPMEPGHPYYENIVKDPRYAEGPKPE
EFPQFESLKLTIERTLPYWNDVIIPQMKEGKRILIAAHGNSLRGIVKHLD
NLSEDAIMALNLPTGIPFVYELDENFKPVVSMQFLGDEETVKKAIEAVAA
QGKAKASFLDH

BO07617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym78-PC 255 CG1721-PC 1..255 1..255 1345 100 Plus
Pglym78-PB 255 CG1721-PB 1..255 1..255 1345 100 Plus
Pglym78-PA 255 CG1721-PA 1..255 1..255 1345 100 Plus
Pglym87-PA 292 CG17645-PA 40..292 3..255 1042 75.9 Plus
CG7059-PC 253 CG7059-PC 6..252 6..252 501 41.4 Plus