Clone Sequence Records
BO07617.3prime Sequence
797 bp (796 high quality bases) assembled on 2006-01-06
> BO07617.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTTGCCCTGGGCGGCCACAGCCTCGA
TGGCCTTCTTCACGGTCTCCTCGTCGCCGAGGAACTGCATGGACACCACC
GGCTTGAAGTTCTCGTCCAGCTCGTAGACGAACGGAATGCCCGTGGGCAG
ATTTAGGGCCATGATGGCGTCCTCAGAAAGGTTGTCTAAATGCTTGACGA
TGCCACGGAGGCTGTTGCCGTGGGCAGCGATCAGGATGCGCTTGCCCTCC
TTCATCTGGGGAATGATGACGTCGTTCCAGTAGGGCAGTGTGCGTTCGAT
GGTCAGCTTGAGGGACTCGAACTGGGGGAACTCCTCGGGCTTGGGACCCT
CGGCGTAGCGGGGATCCTTGACGATGTTCTCGTAGTACGGATGGCCCGGC
TCCATCGGTGGTGGCGGGGTGTCGAAGCTGCGACGCCAGATCTGCACCTG
GGCCTCGCCGTACTTGGCGGCGGTCTCGGCCTTGTTCAGGCCAGTGAGTC
CACCGTAGTGGCGCTCGTTCAGGCGCCAAGTCTTCTGGATGGGGATCTCC
TTGTGGCCACTGGCCTTCAGGATGCTGGCCAGCGTCACCTGGGCGCGGGT
CAGCACCGAGGTGTGGGCCACATCGAACTCCAGGCCGGCATCCTTGACGG
CCTTGCCGGCGGCTAGGGCCTCCTCCTGACCCTTTTCGCTGAGGTTGGCG
TCGTACCAGCCGCAGAACTGATTCTTCTGGTTCCACTCGGACTCGCCGTG
GCGCACCATCACGATCTTGTACTTGCCGCCCATGTCGACTGATAACT
BO07617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1721-PA | 768 | Pglym78-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
CG1721-PB | 768 | Pglym78-RB | 1..765 | 783..19 | 3825 | 100 | Minus |
CG1721-PC | 768 | Pglym78-RC | 1..765 | 783..19 | 3825 | 100 | Minus |
CG17645-PA | 879 | Pglym87-RA | 265..297 | 630..598 | 165 | 100 | Minus |
CG17645-PA | 879 | Pglym87-RA | 553..629 | 342..266 | 160 | 88.3 | Minus |
CG17645-PA | 879 | Pglym87-RA | 367..426 | 528..469 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 1042 | CG1721-RC | 109..873 | 783..19 | 3825 | 100 | Minus |
Pglym78-RB | 1022 | CG1721-RB | 89..853 | 783..19 | 3825 | 100 | Minus |
Pglym78-RA | 1136 | CG1721-RA | 203..967 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29149008..29149506 | 681..183 | 2495 | 100 | Minus |
3R | 32079331 | 3R | 12231802..12232560 | 19..777 | 1215 | 77.3 | Plus |
3R | 32079331 | 3R | 29149569..29149732 | 182..19 | 820 | 100 | Minus |
3R | 32079331 | 3R | 29148450..29148554 | 783..679 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:11:27 has no hits.
BO07617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:05 Download gff for
BO07617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:28 Download gff for
BO07617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:13 Download gff for
BO07617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 13..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:22 Download gff for
BO07617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 13..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:22 Download gff for
BO07617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29148442..29148552 | 681..791 | 96 | -> | Minus |
3R | 29149009..29149506 | 183..680 | 100 | -> | Minus |
3R | 29149569..29149737 | 13..182 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:13 Download gff for
BO07617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24974164..24974274 | 681..791 | 96 | -> | Minus |
arm_3R | 24974731..24975228 | 183..680 | 100 | -> | Minus |
arm_3R | 24975291..24975459 | 13..182 | 98 | | Minus |
BO07617.5prime Sequence
797 bp (796 high quality bases) assembled on 2006-01-06
> BO07617.5prime
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGGCAAGCTTTCTAGACC
BO07617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1721-PA | 768 | Pglym78-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
CG1721-PB | 768 | Pglym78-RB | 1..765 | 17..781 | 3825 | 100 | Plus |
CG1721-PC | 768 | Pglym78-RC | 1..765 | 17..781 | 3825 | 100 | Plus |
CG17645-PA | 879 | Pglym87-RA | 265..297 | 170..202 | 165 | 100 | Plus |
CG17645-PA | 879 | Pglym87-RA | 553..629 | 458..534 | 160 | 88.3 | Plus |
CG17645-PA | 879 | Pglym87-RA | 367..426 | 272..331 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 1042 | CG1721-RC | 109..873 | 17..781 | 3825 | 100 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 89..853 | 17..781 | 3825 | 100 | Plus |
Pglym78-RA | 1136 | CG1721-RA | 203..967 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29149008..29149506 | 119..617 | 2495 | 100 | Plus |
3R | 32079331 | 3R | 12231802..12232560 | 781..23 | 1215 | 77.3 | Minus |
3R | 32079331 | 3R | 29149569..29149732 | 618..781 | 820 | 100 | Plus |
3R | 32079331 | 3R | 29148450..29148554 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:48:10 has no hits.
BO07617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:06 Download gff for
BO07617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:29 Download gff for
BO07617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1721-PC | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:45 Download gff for
BO07617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:32 Download gff for
BO07617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 195..972 | 9..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:32 Download gff for
BO07617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29148442..29148552 | 9..119 | 96 | -> | Plus |
3R | 29149009..29149506 | 120..617 | 100 | -> | Plus |
3R | 29149569..29149737 | 618..787 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:45 Download gff for
BO07617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24975291..24975459 | 618..787 | 98 | | Plus |
arm_3R | 24974164..24974274 | 9..119 | 96 | -> | Plus |
arm_3R | 24974731..24975228 | 120..617 | 100 | -> | Plus |
BO07617.complete Sequence
799 bp (799 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630863
> BO07617.complete
GAAGTTATCAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCC
ACGGCGAGTCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGAC
GCCAACCTCAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGC
CGTCAAGGATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGA
CCCGCGCCCAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAG
GAGATCCCCATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGG
ACTCACTGGCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCC
AGGTGCAGATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAG
CCGGGCCATCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGA
GGGTCCCAAGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCA
TCGAACGCACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAG
GAGGGCAAGCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCAT
CGTCAAGCATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATC
TGCCCACGGGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCG
GTGGTGTCCATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCAT
CGAGGCTGTGGCCGCCCAGGGCAAGGCCAAGGCAAGCTTTCTAGACCAT
BO07617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 768 | CG1721-PC | 1..765 | 17..781 | 3825 | 100 | Plus |
Pglym78-RB | 768 | CG1721-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
Pglym78-RA | 768 | CG1721-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-RC | 1042 | CG1721-RC | 109..873 | 17..781 | 3825 | 100 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 89..853 | 17..781 | 3825 | 100 | Plus |
Pglym78-RA | 1136 | CG1721-RA | 203..967 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29149008..29149506 | 119..617 | 2495 | 100 | Plus |
3R | 32079331 | 3R | 12231802..12232560 | 781..23 | 1215 | 77.3 | Minus |
3R | 32079331 | 3R | 29149569..29149732 | 618..781 | 820 | 100 | Plus |
3R | 32079331 | 3R | 29148450..29148554 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:05 has no hits.
BO07617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:10 Download gff for
BO07617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RC | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:41 Download gff for
BO07617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RC | 62..839 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:17 Download gff for
BO07617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 203..967 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:11 Download gff for
BO07617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RC | 62..839 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:49 Download gff for
BO07617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym78-RA | 203..967 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:49 Download gff for
BO07617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29148450..29148552 | 17..119 | 100 | -> | Plus |
3R | 29149009..29149506 | 120..617 | 100 | -> | Plus |
3R | 29149569..29149732 | 618..783 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:17 Download gff for
BO07617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24974172..24974274 | 17..119 | 100 | -> | Plus |
arm_3R | 24974731..24975228 | 120..617 | 100 | -> | Plus |
arm_3R | 24975291..24975454 | 618..783 | 98 | | Plus |
BO07617.pep Sequence
Translation from 16 to 799
> BO07617.pep
MGGKYKIVMVRHGESEWNQKNQFCGWYDANLSEKGQEEALAAGKAVKDAG
LEFDVAHTSVLTRAQVTLASILKASGHKEIPIQKTWRLNERHYGGLTGLN
KAETAAKYGEAQVQIWRRSFDTPPPPMEPGHPYYENIVKDPRYAEGPKPE
EFPQFESLKLTIERTLPYWNDVIIPQMKEGKRILIAAHGNSLRGIVKHLD
NLSEDAIMALNLPTGIPFVYELDENFKPVVSMQFLGDEETVKKAIEAVAA
QGKAKASFLDH
BO07617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym78-PC | 255 | CG1721-PC | 1..255 | 1..255 | 1345 | 100 | Plus |
Pglym78-PB | 255 | CG1721-PB | 1..255 | 1..255 | 1345 | 100 | Plus |
Pglym78-PA | 255 | CG1721-PA | 1..255 | 1..255 | 1345 | 100 | Plus |
Pglym87-PA | 292 | CG17645-PA | 40..292 | 3..255 | 1042 | 75.9 | Plus |
CG7059-PC | 253 | CG7059-PC | 6..252 | 6..252 | 501 | 41.4 | Plus |