Clone Sequence Records
BO07627.3prime Sequence
813 bp (809 high quality bases) assembled on 2006-01-06
> BO07627.3prime
ATGGTCTAGAAAGCTTGCCGGCACATTGTCATCCATTTCGCGCATCACTT
CATCGGCTCGTGTGATCAGCTCAATCAGCCGGTAGTTCTCCTTGTACAGA
GCAAACTCCTCGAGTAGCTTTAGGTACTTGCGTGCATCGGCGCAGCTGAT
GACACTGGACCCACTTTCTTGGCCGGATCCCCCATTGTTGTTATCGTCTT
GGGCGGACTCATAGCGACGTTTGGTGCCCTGGCGAGGATTCAGCGAGTTT
TCAACTGCCGCAGGCGAACTCACCTTTCGCTGCCGCATCTGCTCGATGTA
CTCCATCTCGTCCTCCACATTGGCCGCCAGAACCTCGGCCAGCGAGGTGA
CACTGGAGCGACCATTGTTCGCGTCTTCATCGAGATCCGCTGGGTCTTGG
TCCAGTTCCGATTCCAGCTCAGCCTCTGGCTCCACTTTTATGTGCACTGT
AGGCGGAATTTCAAGATCCTTTTCCCTTTGTGCTCGGTCATCGTTCTCCT
GGAGCTCCGCCTCGGGCTGCTTCGCCAGGAGCTCTTCCGGGTCCTTGGGC
TCCACTTTGATTTCCTTTTCCTGCTTGATCTCTAGTTTGGGCGGCGGTAC
CACCGGTCCTTTGTCCTGCTGCTGTGGGGCAGGAATCTTGGTGATGCTCT
GAGCGAGCGTGGCTAGTGGTATGATGGTCATGGTCATGGGCTGTCCGCCC
GCTTGCGTCGGAACAATGGGTGTGGCCAGGAGAACTTTTTGAGTGGTGCC
TGGCGGTGTGTTAGCTTGGAGGGGCAGTCTAACTAGAGGCGGCAAGGGCT
TCAGAGCCCTGGC
BO07627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3371-PA | 1746 | CG3371-RA | 949..1743 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-RA | 2329 | CG3371-RA | 1351..2145 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 683069..683863 | 19..813 | 3975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:50:47 has no hits.
BO07627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:25 Download gff for
BO07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-PA | 949..1746 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:53 Download gff for
BO07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-PA | 949..1746 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:34 Download gff for
BO07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 1351..2145 | 19..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:43 Download gff for
BO07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 1351..2145 | 19..813 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:43 Download gff for
BO07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 683069..683863 | 19..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:34 Download gff for
BO07627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 683069..683863 | 19..813 | 100 | | Plus |
BO07627.5prime Sequence
864 bp (761 high quality bases) assembled on 2006-01-06
> BO07627.5prime
GAAGTTATCAGTCGACATGCGGATACGCGAAAAACGCAAGTTGCAGAGGG
AGCTGAGGGTGGAGAAGCGCGTGGAGAGGGAGAAAAAGGAGCACAAGGAG
GCCTCCAAGACGCAGGACAACAACAACAAGGCGAAGGCCACTGACACGGA
GGTTCTCACACCAGCTCCTGCGCCTGCGCCTGCTCCACCAGCAGCACCCA
CTTCGACTGCATCACCCACACCCACTAGCACGCACACCCCCAGCCTGCCG
GCCGCCGAGAAGGTGGCCTTCGACAATCGCATCAAGCGCAAGAATGTCCT
GGCCCTCAACGAAAAGGTTGCTGCTCTGCGGGAATACGATCGGCTGCCGG
TTTATAAGCACGTTGGCCGGCTGTTCAACTGCAGCCCAGATCAGATCAAG
CGGATCGTGCAGCAGCGCGCTGAGATTCTGAACGCGTGGGATCAGCGAAC
CCGCAGGAGCCAGGACGCCAAGACCATGGAGACGAAGACCGTCAGGGTCT
CGATGTTGGGCAAGGCCGTGTACGATTGGATACGCCGCATGATGTACTAC
AAGGACTTCAGCATCTCCGACGGACTCATCCAGAAGATGGCGCTGCAGTT
CAAGAGCTCCATGAACCTGGCACATTTCTTTCCGCACCAGGAGTGGTGCG
ACAAGTTCAGACGCACCTACAGCATCCAACACAGCGACACCAGACTGTTG
AAGATAGGCTACACGCAGGGCTACTCGGTGCAGATCAAGGACATCGTCAA
GGACGTCATGTCGGAAAGCATGCCGGAAAGTGGGCCACGGAACGGCGAGG
AGGATGACGAAGAGGTCAGCTTGGGCAGCCCGGTGAGCAGCCATCCCCGC
AGCTATGTAGAAGA
BO07627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3371-PA | 1746 | CG3371-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-RA | 2329 | CG3371-RA | 403..1250 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 683964..684693 | 864..135 | 3650 | 100 | Minus |
| 3L | 28110227 | 3L | 685027..685147 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:03:30 has no hits.
BO07627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:26 Download gff for
BO07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:54 Download gff for
BO07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:50 Download gff for
BO07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1249 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:35 Download gff for
BO07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1249 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:35 Download gff for
BO07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 683965..684691 | 137..863 | 100 | <- | Minus |
| 3L | 685028..685153 | 9..136 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:50 Download gff for
BO07627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 683965..684691 | 137..863 | 100 | <- | Minus |
| arm_3L | 685028..685153 | 9..136 | 96 | | Minus |
BO07627.complete Sequence
1777 bp (1777 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630865
> BO07627.complete
GAAGTTATCAGTCGACATGCGGATACGCGAAAAACGCAAGTTGCAGAGGG
AGCTGAGGGTGGAGAAGCGCGTGGAGAGGGAGAAAAAGGAGCACAAGGAG
GCCTCCAAGACGCAGGACAACAACAACAAGGCGAAGGCCACTGACACGGA
GGTTCTCACACCAGCTCCTGCGCCTGCGCCTGCTCCACCAGCAGCACCCA
CTTCGACTGCATCACCCACACCCACTAGCACGCACACCCCCAGCCTGCCG
GCCGCCGAGAAGGTGGCCTTCGACAATCGCATCAAGCGCAAGAATGTCCT
GGCCCTCAACGAAAAGGTTGCTGCTCTGCGGGAATACGATCGGCTGCCGG
TTTATAAGCACGTTGGCCGGCTGTTCAACTGCAGCCCAGATCAGATCAAG
CGGATCGTGCAGCAGCGCGCTGAGATTCTGAACGCGTGGGATCAGCGAAC
CCGCAGGAGCCAGGACGCCAAGACCATGGAGACGAAGACCGTCAGGGTCT
CGATGTTGGGCAAGGCCGTGTACGATTGGATACGCCGCATGATGTACTAC
AAGGACTTCAGCATCTCCGACGGACTCATCCAGAAGATGGCGCTGCAGTT
CAAGAGCTCCATGAACCTGGCACATTTCTTTCCGCACCAGGAGTGGTGCG
ACAAGTTCAGACGCACCTACAGCATCCAACACAGCGACACCAGACTGTTG
AAGATAGGCTACACGCAGGGCTACTCGGTGCAGATCAAGGACATCGTCAA
GGACGTCATGTCGGAAAGCATGCCGGAAAGTGGGCCACGGAACGGCGAGG
AGGATGACGAAGAGGTCAGCTTGGGCAGCCCGGTGAGCAGCCATCCCCGC
AGCTATGTAGAAGACGAGGATGACGAGGTGGATGTCGACGGTGGCGGTAT
TAGCGGCGAGGATGATCTGGAGGAGGAGCCTGATGTCAAGCCCTCACTAA
GCGAACTAAATTTTGCCAGGGCTCTGAAGCCCTTGCCGCCTCTAGTTAGA
CTGCCCCTCCAAGCTAACACACCGCCAGGCACCACTCAAAAAGTTCTCCT
GGCCACACCCATTGTTCCGACGCAAGCGGGCGGACAGCCCATGACCATGA
CCATCATACCACTAGCCACGCTCGCTCAGAGCATCACCAAGATTCCTGCC
CCACAGCAGCAGGACAAAGGACCGGTGGTACCGCCGCCCAAACTAGAGAT
CAAGCAGGAAAAGGAAATCAAAGTGGAGCCCAAGGACCCGGAAGAGCTCC
TGGCGAAGCAGCCCGAGGCGGAGCTCCAGGAGAACGATGACCGAGCACAA
AGGGAAAAGGATCTTGAAATTCCGCCTACAGTGCACATAAAAGTGGAGCC
AGAGGCTGAGCTGGAATCGGAACTGGACCAAGACCCAGCGGATCTCGATG
AAGACGCGAACAATGGTCGCTCCAGTGTCACCTCGCTGGCCGAGGTTCTG
GCGGCCAATGTGGAGGACGAGATGGAGTACATCGAGCAGATGCGGCAGCG
AAAGGTGAGTTCGCCTGCGGCAGTTGAAAACTCGCTGAATCCTCGCCAGG
GCACCAAACGTCGCTATGAGTCCGCCCAAGACGATAACAACAATGGGGGA
TCCGGCCAAGAAAGTGGGTCCAGTGTCATCAGCTGCGCCGATGCACGCAA
GTACCTAAAGCTACTCGAGGAGTTTGCTCTGTACAAGGAGAACTACCGGC
TGATTGAGCTGATCACACGAGCCGATGAAGTGATGCGCGAAATGGATGAC
AATGTGCCGGCAAGCTTTCTAGACCAT
BO07627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-RA | 1746 | CG3371-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-RA | 2329 | CG3371-RA | 403..2145 | 17..1759 | 8715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 683069..684693 | 1759..135 | 8125 | 100 | Minus |
| 3L | 28110227 | 3L | 685027..685147 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:54 has no hits.
BO07627.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:44 Download gff for
BO07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-RA | 1..1746 | 17..1760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:42 Download gff for
BO07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-RA | 393..2141 | 9..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:47 Download gff for
BO07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 403..2145 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:44 Download gff for
BO07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-RA | 393..2141 | 9..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:51 Download gff for
BO07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 403..2145 | 17..1761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:51 Download gff for
BO07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 685028..685147 | 17..136 | 100 | | Minus |
| 3L | 683067..684691 | 137..1761 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:47 Download gff for
BO07627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 683067..684691 | 137..1761 | 99 | <- | Minus |
| arm_3L | 685028..685147 | 17..136 | 100 | | Minus |
BO07627.pep Sequence
Translation from 16 to 1777
> BO07627.pep
MRIREKRKLQRELRVEKRVEREKKEHKEASKTQDNNNKAKATDTEVLTPA
PAPAPAPPAAPTSTASPTPTSTHTPSLPAAEKVAFDNRIKRKNVLALNEK
VAALREYDRLPVYKHVGRLFNCSPDQIKRIVQQRAEILNAWDQRTRRSQD
AKTMETKTVRVSMLGKAVYDWIRRMMYYKDFSISDGLIQKMALQFKSSMN
LAHFFPHQEWCDKFRRTYSIQHSDTRLLKIGYTQGYSVQIKDIVKDVMSE
SMPESGPRNGEEDDEEVSLGSPVSSHPRSYVEDEDDEVDVDGGGISGEDD
LEEEPDVKPSLSELNFARALKPLPPLVRLPLQANTPPGTTQKVLLATPIV
PTQAGGQPMTMTIIPLATLAQSITKIPAPQQQDKGPVVPPPKLEIKQEKE
IKVEPKDPEELLAKQPEAELQENDDRAQREKDLEIPPTVHIKVEPEAELE
SELDQDPADLDEDANNGRSSVTSLAEVLAANVEDEMEYIEQMRQRKVSSP
AAVENSLNPRQGTKRRYESAQDDNNNGGSGQESGSSVISCADARKYLKLL
EEFALYKENYRLIELITRADEVMREMDDNVPASFLDH
BO07627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-PA | 581 | CG3371-PA | 1..581 | 1..581 | 2979 | 100 | Plus |
| CG13895-PA | 499 | CG13895-PA | 19..171 | 92..244 | 250 | 35.7 | Plus |
| CG13895-PB | 506 | CG13895-PB | 26..178 | 92..244 | 250 | 35.7 | Plus |
| ebd2-PB | 367 | CG12972-PB | 25..259 | 87..313 | 157 | 22.7 | Plus |
| ebd2-PA | 367 | CG12972-PA | 25..259 | 87..313 | 157 | 22.7 | Plus |
