Clone Sequence Records
BO07628.3prime Sequence
888 bp (887 high quality bases) assembled on 2006-01-06
> BO07628.3prime
ATGGTCTAGAAAGCTTGCCATCTTGTCCATGAACCACGGCTGTCCGTTGT
TCTCGCGACGCTTGGTGAGAATCTCGCATCCGGTTTCGTTGACCAGCAGT
GTCTGCTCAAACTGGGCGGAGTACAGGCCATCGGCGGTCACAGCAGTCCA
GTCATCTGGCCAGGTTTCAGCCTTCTGGACGCCAACGGAGATCATGGGCT
CGATGGTGAAGCAGTGGCCAGGGGCCATTACTCCTACGGCAGAGTTTTTG
GCATAGTGAGGCACATTGGGAGCTGTGTGGAAAACACGGTGAATGCCATG
ACCGCAATAGCTGCGCACCACGCTGAATCCATGTGGTGCCACATACTTTT
GGATCACGTTGCCAATATCGCGATACTTTTCACCCGGACGCACGAACTCA
ATGGCCTTGCTGAGCGCCTCGTGGGTGACCTGCACCAGTTTCTTGTGCTT
CTCCGAGACATTGCCCACAAAGAAGGTCTCGTTGAGATCACCATGGAAGC
CGCGATGATAGACGGTCACATCGATGTTACATAGATCTCCATCCTGTAGA
GGACGCTGATCGGGGATGCCGTGGCAAATCACCTCGTTGACCGATGTGCA
ACAGGACTTGGGGAAGTTGTAGTAGTTGAGGGGCGACGGATAGCACTCCC
GTTCGATGGCGGCCTCGTGGACCAAACGATCCAGTTCGTCGGTGGTGATG
CCCACCTCCACGGCTTTGGCACCCTCATCCAAGCATTCTCGACCCAATCT
GCCGGCCACTCGCATGCCCTCGATCTCCTCGTCGTCCAGCACCTTAATCT
TGGTGCCCCGCAGTGCTTCCTCCGAGAGTGAACGTCCTGCTGGATGATCG
GCGTAATCTGGACGTTGTATGGCGTTCGGAACTGTTCG
BO07628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-PA | 1125 | CG13630-RA | 253..1122 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-RA | 1301 | CG13630-RA | 336..1205 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24718321..24718960 | 249..888 | 3200 | 100 | Plus |
| 3R | 32079331 | 3R | 24718033..24718275 | 19..261 | 1155 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:03:36 has no hits.
BO07628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:27 Download gff for
BO07628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-PA | 253..1125 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:56 Download gff for
BO07628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-PA | 253..1125 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:53 Download gff for
BO07628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 336..1205 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:40 Download gff for
BO07628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 336..1205 | 19..888 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:40 Download gff for
BO07628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24718033..24718262 | 19..248 | 100 | <- | Plus |
| 3R | 24718321..24718960 | 249..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:53 Download gff for
BO07628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20543755..20543984 | 19..248 | 100 | <- | Plus |
| arm_3R | 20544043..20544682 | 249..888 | 100 | | Plus |
BO07628.5prime Sequence
918 bp (773 high quality bases) assembled on 2006-01-06
> BO07628.5prime
GAAGTTATCAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCA
AGGATGCGACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGC
TCATTTTTCTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAA
GGCGATTCATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATG
GAGCCTACAATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCG
TTCCCACAGACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGA
TTACGCCGATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGG
GCACCAAGATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTG
GCCGGCAGATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGA
GGTGGGCATCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCA
TCGAACGGGAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAG
TCCTGTTGCACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCA
GCGTCCTCTACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATC
ATCGCGGCTTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTC
TCGGAGAAGCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAA
GGCCATTGAGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACG
TGATCCAAAAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTAT
TGCGGTCATGGCATTCACCGTGTTTTTCACACAGCTCCCAATGTGCCTCA
CTATGCCAAAAACTCTGC
BO07628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-PA | 1125 | CG13630-RA | 1..902 | 17..918 | 4485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-RA | 1301 | CG13630-RA | 84..985 | 17..918 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24718321..24719061 | 908..168 | 3690 | 99.9 | Minus |
| 3R | 32079331 | 3R | 24719128..24719281 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:39:52 has no hits.
BO07628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:28 Download gff for
BO07628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:57 Download gff for
BO07628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:58 Download gff for
BO07628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 82..985 | 14..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:54 Download gff for
BO07628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 82..985 | 14..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:54 Download gff for
BO07628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24718317..24719058 | 171..912 | 99 | <- | Minus |
| 3R | 24719128..24719283 | 14..170 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:58 Download gff for
BO07628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20544850..20545005 | 14..170 | 99 | | Minus |
| arm_3R | 20544039..20544780 | 171..912 | 99 | <- | Minus |
BO07628.complete Sequence
1156 bp (1156 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630866
> BO07628.complete
GAAGTTATCAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCA
AGGATGCGACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGC
TCATTTTTCTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAA
GGCGATTCATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATG
GAGCCTACAATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCG
TTCCCACAGACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGA
TTACGCCGATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGG
GCACCAAGATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTG
GCCGGCAGATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGA
GGTGGGCATCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCA
TCGAACGGGAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAG
TCCTGTTGCACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCA
GCGTCCTCTACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATC
ATCGCGGCTTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTC
TCGGAGAAGCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAA
GGCCATTGAGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACG
TGATCCAAAAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTAT
TGCGGTCATGGCATTCACCGTGTTTTCCACACAGCTCCCAATGTGCCTCA
CTATGCCAAAAACTCTGCCGTAGGAGTAATGGCCCCTGGCCACTGCTTCA
CCATCGAGCCCATGATCTCCGTTGGCGTCCAGAAGGCTGAAACCTGGCCA
GATGACTGGACTGCTGTGACCGCCGATGGCCTGTACTCCGCCCAGTTTGA
GCAGACACTGCTGGTCAACGAAACCGGATGCGAGATTCTCACCAAGCGTC
GCGAGAACAACGGACAGCCGTGGTTCATGGACAAGATGGCAAGCTTTCTA
GACCAT
BO07628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-RA | 1125 | CG13630-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-RA | 1301 | CG13630-RA | 84..1205 | 17..1138 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24718321..24719061 | 908..168 | 3705 | 100 | Minus |
| 3R | 32079331 | 3R | 24718033..24718275 | 1138..896 | 1155 | 98.4 | Minus |
| 3R | 32079331 | 3R | 24719128..24719281 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:18 has no hits.
BO07628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:29 Download gff for
BO07628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 1..1125 | 17..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:17 Download gff for
BO07628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 80..1203 | 14..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:53 Download gff for
BO07628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 84..1205 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:29 Download gff for
BO07628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 80..1203 | 14..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:18 Download gff for
BO07628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 84..1205 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:18 Download gff for
BO07628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24718030..24718262 | 909..1140 | 99 | <- | Minus |
| 3R | 24718321..24719058 | 171..908 | 100 | <- | Minus |
| 3R | 24719128..24719281 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:53 Download gff for
BO07628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20543752..20543984 | 909..1140 | 99 | <- | Minus |
| arm_3R | 20544043..20544780 | 171..908 | 100 | <- | Minus |
| arm_3R | 20544850..20545003 | 17..170 | 100 | | Minus |
BO07628.pep Sequence
Translation from 16 to 1156
> BO07628.pep
MTQKCETTNCGKDATLQCPTCLKLGIKGSFFCSQPCFKGFWKEHKAIHAL
AAGASNSAEQDGAYNPWPHFRFTGKLRPFPQTPKRTVPNAIQRPDYADHP
AGRSLSEEALRGTKIKVLDDEEIEGMRVAGRLGRECLDEGAKAVEVGITT
DELDRLVHEAAIERECYPSPLNYYNFPKSCCTSVNEVICHGIPDQRPLQD
GDLCNIDVTVYHRGFHGDLNETFFVGNVSEKHKKLVQVTHEALSKAIEFV
RPGEKYRDIGNVIQKYVAPHGFSVVRSYCGHGIHRVFHTAPNVPHYAKNS
AVGVMAPGHCFTIEPMISVGVQKAETWPDDWTAVTADGLYSAQFEQTLLV
NETGCEILTKRRENNGQPWFMDKMASFLDH
BO07628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-PA | 374 | CG13630-PA | 1..374 | 1..374 | 2048 | 100 | Plus |
| CG5188-PA | 317 | CG5188-PA | 30..315 | 73..360 | 628 | 43.5 | Plus |
