Clone BO07630 Report

Search the DGRC for BO07630

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptOdc1-RA
Protein status:BO07630.pep: validated full length
Sequenced Size:1216

Clone Sequence Records

BO07630.3prime Sequence

891 bp (879 high quality bases) assembled on 2006-01-06

> BO07630.3prime
ATGGTCTAGAAAGCTTGCTATAGCTTGGAAGTACAGGGTCTTGGGGACTT
CGAATCCATTGAATGCACTGGCAATGGGCATGGTGTAGGCGCCCATGTTT
CGGAATCCCAAAAGATCGCCTCGGTTTAGGTTGGGCAAGTGCAGGTCCTC
CGAAATCTTATCTAGGGCGTCACAACTTGGCCCCCAAATCAAGGACTTTA
GGTGTGGCAAAGATTCTGCATTGTCCAGATAATGCTCTGCAATCACCACT
TGATGGTCGTACAGAATGCAGTTGAAGGACCCATAGACGCCGTCATTCAG
ATAGTACATTACGGTGTCCAGTTTGCCAGCTTCGTTCCTGATCTCCCGCT
TGGCGTGGATCTTGCAAACCAAGGTGCAGGCTGCCGCCACAAAGAAGCGT
CCTGGTTCGGCGATTATGTGAACGCGTTCGTCGGGAAAATGACGCTGCAC
CGAGGTATTCACACTTTCGGCTATCTTCTCAAACTTTACGTCATCGCTGC
CAGGGAACCCACCGCCAATGTCCAGAAAGTCCATGTCATAGCCCAGTAGT
GCGCCGAACTTGAAGAGGTTCTTGGCCTTCTTGATGGCCCGATCGTAGGC
CTGCAGCTCGCTGCATCCGGAGCCGACGTGGAAACTGGTGCCGGTCACCT
TCAGCTCCAAGGATTTGGCCAGCAGCATTAGGGCCGCTGCATCCACATCC
GCATCACAGCCAAATTTGTCGCCCAGTGGGCACTGTGCCTCCTTGGCCTC
GCTCTTGAATCTCACGATCAGGTTGGAGTTGGGATAGTGCGTGTGCAGCT
TGTATACCTCGAACTCATTGTCCACCGTTCCGTTGGACACCTGGTGCTCC
TTGGCGTACTCCAGATGGCTGACAGGGCGGCAGGGATTGGC

BO07630.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8721-PA 1185 Odc1-RA 310..1182 891..19 4365 100 Minus
CG8719-PA 1182 Odc2-RA 548..626 653..575 245 92.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1253 CG8721-RA 337..1209 891..19 4365 100 Minus
Odc2-RA 1268 CG8719-RA 332..1179 887..37 1050 75.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8005624..8005926 777..475 1500 99.7 Minus
2R 25286936 2R 8005982..8006233 476..225 1260 100 Minus
2R 25286936 2R 8006489..8006628 158..19 700 100 Minus
2R 25286936 2R 8005455..8005573 891..773 595 100 Minus
2R 25286936 2R 8007993..8008218 777..552 530 82.3 Minus
2R 25286936 2R 8006362..8006431 226..157 350 100 Minus
2R 25286936 2R 8008418..8008535 410..293 245 80.5 Minus
2R 25286936 2R 8007831..8007945 887..773 230 80 Minus
2R 25286936 2R 8008862..8008973 148..37 215 79.5 Minus
Blast to na_te.dros performed 2015-02-12 14:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 579..633 91..38 110 71.4 Minus

BO07630.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:31 Download gff for BO07630.3prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-PA 310..1185 16..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:00 Download gff for BO07630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8721-PA 310..1185 16..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:27 Download gff for BO07630.3prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 337..1214 12..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:47 Download gff for BO07630.3prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 337..1214 12..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:47 Download gff for BO07630.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8005455..8005573 773..891 100 -> Minus
2R 8005629..8005926 475..772 100 -> Minus
2R 8005984..8006232 226..474 100 -> Minus
2R 8006363..8006431 157..225 100 -> Minus
2R 8006491..8006633 12..156 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:27 Download gff for BO07630.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3892960..3893078 773..891 100 -> Minus
arm_2R 3893134..3893431 475..772 100 -> Minus
arm_2R 3893489..3893737 226..474 100 -> Minus
arm_2R 3893868..3893936 157..225 100 -> Minus
arm_2R 3893996..3894138 12..156 97   Minus

BO07630.5prime Sequence

949 bp (875 high quality bases) assembled on 2006-01-06

> BO07630.5prime
GAAGTTATCAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACG
AACGCGAGCTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGC
CTGGACCAGGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCT
GCGCCTCTGGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCA
AGTGCAATGACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCC
GGATTCGACTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGA
TGTCTCGCCGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCC
ATCTGGAGTACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAAT
GAGTTCGAGGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGAT
CGTGAGATTCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACA
AATTTGGCTGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCC
AAATCCTTGGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGG
ATGCAGCGAGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACC
TCTTCAAGTTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATT
GGCGGTGGGTTCCCTGGCAGCGATGACGTANAGTTTGAGAAGATAGCCGA
AAGTGTGAATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACA
TAATCGCCGAACCAGGACGCTTCTTTGTGGCGGCAGCCTGCACCTTGGTT
TGCAAGATCCACGCCAAGCGGGAGATCAGGAACGAAGCTGGCAAACTGGA
CACCCGTATGTACTATCTGAATGACCGCGTCTATGGGTCCTTTCACTGC

BO07630.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8721-PA 1185 Odc1-RA 1..888 17..904 4421 99.8 Plus
CG8719-PA 1182 Odc2-RA 548..626 564..642 245 92.4 Plus
CG8721-PA 1185 Odc1-RA 892..926 908..942 150 97.1 Plus
CG8719-PA 1182 Odc2-RA 85..164 101..180 150 87.5 Plus
CG8719-PA 1182 Odc2-RA 235..261 251..277 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1253 CG8721-RA 24..960 13..949 4569 99.3 Plus
Odc2-RA 1268 CG8719-RA 58..926 56..924 1424 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8005624..8005926 440..742 1489 99.3 Plus
2R 25286936 2R 8004847..8005122 13..288 1365 99.6 Plus
2R 25286936 2R 8005982..8006190 741..949 955 97.1 Plus
2R 25286936 2R 8005415..8005573 286..444 795 100 Plus
2R 25286936 2R 8007993..8008218 440..665 530 82.3 Plus
2R 25286936 2R 8007303..8007535 56..288 520 81.5 Plus
2R 25286936 2R 8007806..8007945 305..444 280 80 Plus
2R 25286936 2R 8008418..8008535 807..924 230 79.7 Plus
Blast to na_te.dros performed on 2015-02-10 15:49:53 has no hits.

BO07630.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:32 Download gff for BO07630.5prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-PA 1..933 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:01 Download gff for BO07630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8721-PA 1..933 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:52 Download gff for BO07630.5prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 17..960 7..949 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:19 Download gff for BO07630.5prime
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 17..960 7..949 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:19 Download gff for BO07630.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8004840..8005120 7..286 98 -> Plus
2R 8005416..8005573 287..444 100 -> Plus
2R 8005629..8005926 445..742 99 -> Plus
2R 8005984..8006190 743..949 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:52 Download gff for BO07630.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3892921..3893078 287..444 100 -> Plus
arm_2R 3892345..3892625 7..286 98 -> Plus
arm_2R 3893134..3893431 445..742 99 -> Plus
arm_2R 3893489..3893695 743..949 97   Plus

BO07630.complete Sequence

1216 bp (1216 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630867

> BO07630.complete
GAAGTTATCAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACG
AACGCGAGCTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGC
CTGGACCAGGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCT
GCGCCTCTGGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCA
AGTGCAATGACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCC
GGATTCGACTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGA
TGTCTCGCCGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCC
ATCTGGAGTACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAAT
GAGTTCGAGGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGAT
CGTGAGATTCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACA
AATTTGGCTGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCC
AAATCCTTGGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGG
ATGCAGCGAGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACC
TCTTCAAGTTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATT
GGCGGTGGGTTCCCTGGCAGCGATGACGTAAAGTTTGAGAAGATAGCCGA
AAGTGTGAATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACA
TAATCGCCGAACCAGGACGCTTCTTTGTGGCGGCAGCCTGCACCTTGGTT
TGCAAGATCCACGCCAAGCGGGAGATCAGGAACGAAGCTGGCAAACTGGA
CACCGTAATGTACTATCTGAATGACGGCGTCTATGGGTCCTTCAACTGCA
TTCTGTACGACCATCAAGTGGTGATTGCAGAGCATTATCTGGACAATGCA
GAATCTTTGCCACACCTAAAGTCCTTGATTTGGGGGCCAAGTTGTGACGC
CCTAGATAAGATTTCGGAGGACCTGCACTTGCCCAACCTAAACCGAGGCG
ATCTTTTGGGATTCCGAAACATGGGCGCCTACACCATGCCCATTGCCAGT
GCATTCAATGGATTCGAAGTCCCCAAGACCCTGTACTTCCAAGCTATAGC
AAGCTTTCTAGACCAT

BO07630.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1185 CG8721-PA 1..1182 17..1198 5910 100 Plus
Odc2-RA 1182 CG8719-PA 40..1161 56..1180 1570 76.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-RA 1253 CG8721-RA 24..1209 13..1198 5915 99.9 Plus
Odc2-RA 1268 CG8719-RA 58..1179 56..1180 1570 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8005624..8005926 440..742 1500 99.7 Plus
2R 25286936 2R 8004847..8005122 13..288 1365 99.6 Plus
2R 25286936 2R 8005982..8006233 741..992 1260 100 Plus
2R 25286936 2R 8005415..8005573 286..444 795 100 Plus
2R 25286936 2R 8006489..8006628 1059..1198 700 100 Plus
2R 25286936 2R 8007993..8008218 440..665 530 82.3 Plus
2R 25286936 2R 8007303..8007535 56..288 520 81.5 Plus
2R 25286936 2R 8006362..8006431 991..1060 350 100 Plus
2R 25286936 2R 8007806..8007945 305..444 280 80 Plus
2R 25286936 2R 8008418..8008535 807..924 245 80.5 Plus
2R 25286936 2R 8008862..8008973 1069..1180 215 79.5 Plus
Blast to na_te.dros performed 2014-11-27 19:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 579..633 1126..1179 110 71.4 Plus

BO07630.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:31 Download gff for BO07630.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 1..1185 17..1201 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:19 Download gff for BO07630.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 38..1235 7..1205 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:47 Download gff for BO07630.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 28..1209 17..1200 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:31 Download gff for BO07630.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 38..1235 7..1205 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:34 Download gff for BO07630.complete
Subject Subject Range Query Range Percent Splice Strand
Odc1-RA 28..1209 17..1200 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:34 Download gff for BO07630.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8005984..8006232 743..991 100 -> Plus
2R 8006363..8006431 992..1060 100 -> Plus
2R 8006491..8006628 1061..1200 98   Plus
2R 8004851..8005120 17..286 100 -> Plus
2R 8005416..8005573 287..444 100 -> Plus
2R 8005629..8005926 445..742 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:47 Download gff for BO07630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3892921..3893078 287..444 100 -> Plus
arm_2R 3892356..3892625 17..286 100 -> Plus
arm_2R 3893134..3893431 445..742 100 -> Plus
arm_2R 3893489..3893737 743..991 100 -> Plus
arm_2R 3893868..3893936 992..1060 100 -> Plus
arm_2R 3893996..3894133 1061..1200 98   Plus

BO07630.pep Sequence

Translation from 16 to 1216

> BO07630.pep
MAAATPEIQFYERELNIRRVIEECDLQRLDQALNICDLSSVERKLRLWQK
LLPRIKPFYAVKCNDDPMVVRLLAQLGAGFDCASKNEVKLVLGFDVSPER
IIFANPCRPVSHLEYAKEHQVSNGTVDNEFEVYKLHTHYPNSNLIVRFKS
EAKEAQCPLGDKFGCDADVDAAALMLLAKSLELKVTGTSFHVGSGCSELQ
AYDRAIKKAKNLFKFGALLGYDMDFLDIGGGFPGSDDVKFEKIAESVNTS
VQRHFPDERVHIIAEPGRFFVAAACTLVCKIHAKREIRNEAGKLDTVMYY
LNDGVYGSFNCILYDHQVVIAEHYLDNAESLPHLKSLIWGPSCDALDKIS
EDLHLPNLNRGDLLGFRNMGAYTMPIASAFNGFEVPKTLYFQAIASFLDH

BO07630.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Odc1-PA 394 CG8721-PA 1..394 1..394 2073 100 Plus
Odc2-PA 393 CG8719-PA 8..392 8..393 1545 74.1 Plus