Clone Sequence Records
BO07631.3prime Sequence
956 bp (850 high quality bases) assembled on 2006-01-06
> BO07631.3prime
ATGGTCTAGAAAGCTTGCGCAAGCACCCTTTTCCTTCGCATCGCATTGGT
CGACCAACTGGGCATAGAGAACTAGGTCAAGGAGACGGCAGGAATATCCG
GTCTCGTTATCGTACCAACTGATCAACTTGACGAAGTTATCGTTTAGGGC
AATACAGGCCTTGGCATCAAAGACGGATGCAAATCGTGAGCCGTTAAAAT
CGGTGGACACCACCTCCTCCTCCACATACCCCAGGATTCCCTTCATTTCG
CATTTGGATGCAGCCTTTATGCACTTCTTGATATCGTCCATTTTGGCGGG
CTTAGAAAGCCTACAGGTGAGGTCCACCACCGAGACATTGGGAACTGGTA
CACGGAAAGCCATACCCGTTAGCTTCCCGTTTAGATCCGGAATCACCTTG
CCGACGGCTTTAGCGGCTCCCGTGGATGCGGGTATGATGTTGGTCATGCC
ACTGCGTCCATCCCGCCAGAGTTTGCTGCTGGGTCCGTCGATGATCTTTT
GGGTAGCTGTAGCCGCATGAACGGTGGTCATAAGGCCCTCACATATTTCA
AAGTTATCGTGCACCACCTTGGCCAGCGGCGCCAGGCAATTGGTTGTGCA
TGAGGCATTCGAGATGATTGCTGTGCCCGGCTTGTATGCCTCAAGATTCA
CTCCGCACACAAACATCGGAGCATCGGCAGATGGTGCCGATATGACCACC
TTTTTGGCCCCACTATCCAAGTGACCTTGACAGGCTTTCAGGGTGGTAAA
CCTACCGGAGCACTCCACCACCGTATGCACGCCCAGGTCGCACCATTTAA
TCTTCTTGACGTCCGACTCCTTAAGCAGCTGGATCTTCTTGCCATTAACA
ACAAGATTGTTCCCGTCGACAGAGATCTTCTGATTGAACTGTCCATGAGT
GGAGTCGTATCGCAGCATGTAGGCCAGATACTTGGGGATCCAGTGAGGGA
TCGTTG
BO07631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-PA | 1032 | CG9010-RA | 112..1029 | 936..19 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-RA | 1253 | CG9010-RA | 193..1129 | 956..19 | 4665 | 99.9 | Minus |
| Gapdh2-RC | 1377 | CG8893-RC | 372..770 | 724..326 | 455 | 75.6 | Minus |
| Gapdh2-RA | 1443 | CG8893-RA | 438..836 | 724..326 | 455 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16959067..16960003 | 19..956 | 4640 | 99.9 | Plus |
| X | 23542271 | X | 15868656..15869054 | 724..326 | 420 | 73.7 | Minus |
| 2R | 25286936 | 2R | 7792392..7792784 | 316..708 | 405 | 73.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:51:00 has no hits.
BO07631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:33 Download gff for
BO07631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-PA | 93..1032 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:03 Download gff for
BO07631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-PA | 93..1032 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:37 Download gff for
BO07631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 193..1129 | 19..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:43:35 Download gff for
BO07631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 193..1129 | 19..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:43:35 Download gff for
BO07631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16959067..16960003 | 19..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:37 Download gff for
BO07631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12846572..12847508 | 19..956 | 99 | | Plus |
BO07631.5prime Sequence
781 bp (780 high quality bases) assembled on 2006-01-06
> BO07631.5prime
GAAGTTATCAGTCGACATGTCCGGTATTGGCATCAATGGCTTTGGCCGAA
TCGGTCGCATGTTTGCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATC
GTGGCAATCAACGATCCCTCACTGGATCCCAAGTATCTGGCCTACATGCT
GCGATACGACTCCACTCATGGACAGTTCAATCAGAAGATCTCTGTCGACG
GGAACAATCTTGTTGTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCG
GACGTCAAGAAGATTAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGA
GTGCTCCGGTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATA
GTGGGGCCAAAAAGGTGGTCATATCGGCACCATCTGCCGATGCTCCGATG
TTTGTGTGCGGAGTGAATCTTGAGGCATACAAGCCGGGCACAGCAATCAT
CTCGAATGCCTCATGCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGG
TGCACGATAACTTTGAAATATGTGAGGGCCTTATGACCACCGTTCATGCG
GCTACAGCTACCCAAAAGATCATCGACGGACCCAGCAGCAAACTCTGGCG
GGATGGACGCAGTGGCATGACCAACATCATACCCGCATCCACGGGAGCCG
CTAAAGCCGTCGGCAAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGT
ATGGCTTTCCGTGTACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTG
TAGGCTTTCTAAGCCCGCCAAAATGGACGAT
BO07631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-PA | 1032 | CG9010-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-RA | 1253 | CG9010-RA | 101..865 | 17..781 | 3825 | 100 | Plus |
| Gapdh2-RC | 1377 | CG8893-RC | 372..770 | 340..738 | 455 | 75.6 | Plus |
| Gapdh2-RA | 1443 | CG8893-RA | 438..836 | 340..738 | 455 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16959331..16960095 | 781..17 | 3825 | 100 | Minus |
| X | 23542271 | X | 15868656..15869054 | 340..738 | 420 | 73.7 | Plus |
| 2R | 25286936 | 2R | 7792392..7792784 | 748..356 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:52:56 has no hits.
BO07631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:34 Download gff for
BO07631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-PA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:04 Download gff for
BO07631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-PA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:11 Download gff for
BO07631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 95..865 | 12..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:42 Download gff for
BO07631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 95..865 | 12..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:42 Download gff for
BO07631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16959331..16960101 | 12..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:11 Download gff for
BO07631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12846836..12847606 | 12..781 | 99 | | Minus |
BO07631.complete Sequence
1063 bp assembled on 2006-12-18
GenBank Submission: FJ630868
> BO07631.complete
GAAGTTATCAGTCGACATGTCCGGTATTGGCATCAATGGCTTTGGCCGAA
TCGGTCGCATGTTTGCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATC
GTGGCAATCAACGATCCCTCACTGGATCCCAAGTATCTGGCCTACATGCT
GCGATACGACTCCACTCATGGACAGTTCAATCAGAAGATCTCTGTCGACG
GGAACAATCTTGTTGTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCG
GACGTCAAGAAGATTAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGA
GTGCTCCGGTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATA
GTGGGGCCAAAAAGGTGGTCATATCGGCACCATCTGCCGATGCTCCGATG
TTTGTGTGCGGAGTGAATCTTGAGGCATACAAGCCGGGCACAGCAATCAT
CTCGAATGCCTCATGCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGG
TGCACGATAACTTTGAAATATGTGAGGGCCTTATGACCACCGTTCATGCG
GCTACAGCTACCCAAAAGATCATCGACGGACCCAGCAGCAAACTCTGGCG
GGATGGACGCAGTGGCATGACCAACATCATACCCGCATCCACGGGAGCCG
CTAAAGCCGTCGGCAAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGT
ATGGCTTTCCGTGTACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTG
TAGGCTTTCTAAGCCCGCCAAAATGGACGATATCAAGAAGTGCATAAAGG
CTGCATCCAAATGCGAAATGAAGGGAATCCTGGGGTATGTGGAGGAGGAG
GTGGTGTCCACCGATTTTAACGGCTCACGATTTGCATCCGTCTTTGATGC
CAAGGCCTGTATTGCCCTAAACGATAACTTCGTCAAGTTGATCAGTTGGT
ACGATAACGAGACCGGATATTCCTGCCGTCTCCTTGACCTAGTTCTCTAT
GCCCAGTTGGTCGACCAATGCGATGCGAAGGAAAAGGGTGCTTGCGCAAG
CTTTCTAGACCAT
BO07631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-RA | 1032 | CG9010-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| Gapdh2-RC | 999 | CG8893-PC | 321..719 | 340..738 | 420 | 73.7 | Plus |
| Gapdh2-RA | 999 | CG8893-PA | 321..719 | 340..738 | 420 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-RA | 1253 | CG9010-RA | 101..1129 | 17..1045 | 5145 | 100 | Plus |
| Gapdh2-RC | 1377 | CG8893-RC | 372..770 | 340..738 | 420 | 73.7 | Plus |
| Gapdh2-RA | 1443 | CG8893-RA | 438..836 | 340..738 | 420 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16959067..16960095 | 1045..17 | 5145 | 100 | Minus |
| X | 23542271 | X | 15868656..15869054 | 340..738 | 420 | 73.7 | Plus |
| 2R | 25286936 | 2R | 7792392..7792784 | 748..356 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:17:25 has no hits.
BO07631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:29 Download gff for
BO07631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 1..1032 | 17..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:40 Download gff for
BO07631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 53..1081 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:20 Download gff for
BO07631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 101..1129 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:30 Download gff for
BO07631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 47..1081 | 12..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:20 Download gff for
BO07631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 101..1129 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:20 Download gff for
BO07631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16959065..16960095 | 17..1047 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:20 Download gff for
BO07631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12846570..12847600 | 17..1047 | 99 | | Minus |
BO07631.pep Sequence
Translation from 16 to 1063
> BO07631.pep
MSGIGINGFGRIGRMFARQALVRKDVKIVAINDPSLDPKYLAYMLRYDST
HGQFNQKISVDGNNLVVNGKKIQLLKESDVKKIKWCDLGVHTVVECSGRF
TTLKACQGHLDSGAKKVVISAPSADAPMFVCGVNLEAYKPGTAIISNASC
TTNCLAPLAKVVHDNFEICEGLMTTVHAATATQKIIDGPSSKLWRDGRSG
MTNIIPASTGAAKAVGKVIPDLNGKLTGMAFRVPVPNVSVVDLTCRLSKP
AKMDDIKKCIKAASKCEMKGILGYVEEEVVSTDFNGSRFASVFDAKACIA
LNDNFVKLISWYDNETGYSCRLLDLVLYAQLVDQCDAKEKGACASFLDH
BO07631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-PA | 343 | CG9010-PA | 1..343 | 1..343 | 1787 | 100 | Plus |
| Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..333 | 1114 | 64.9 | Plus |
| Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..333 | 1114 | 64.9 | Plus |
| Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..333 | 1114 | 65.2 | Plus |
| Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..333 | 1114 | 65.2 | Plus |
