Clone Sequence Records
BO07633.3prime Sequence
737 bp (736 high quality bases) assembled on 2006-01-06
> BO07633.3prime
ATGGTCTAGAAAGCTTGCCATGTACAAATAAGAGCTCTCCTTCCGCGGAG
GGATGTAGCTCGAGCTGCAGGCAACGCCCGCGGCTTTAAGTACCTTGATC
ACTGGCTGCGCAGCTGTGGCGTCGAGGGGCAGCTTGTCGGTGTAAATAAC
GAAAGAGGTAACAGGCAATTCCATCTGATCCCGCCAACTGGCAACGCCTG
CTGCAACTCCAGCGATAAAGTTGGGAGCCTCTAGTTCAGTGATATCCTTC
TGGTTGGCACCTATGCCGCGGACAACGGCAATGTGATCCCGGTAGAGCTG
GATGTCCTCGCTTTTGAACTCGACCTTTGGCTTAAGCGTCAGAGTGATCA
CTTTCTTGGCAAGCTTCACGTACGGCAGTAGGAGCTCCGCTACCTCGCCG
CTACTGGTCAGGTCCTCGTTGATTATGGCCAGCAACTGTTTGGACGAATG
ACTCCAGTGCAGGGTCGAGTTATTGGCAGGAATGGCGCACACACGCTTTG
CATCCTTTTCCAGCAGAGAAGAGGCGAAGTGAGTGACGTTGACGCCCTCA
ATGACCACCAGCATCTCGCTCTCCACAGGGGCAGCTTCCCCATCGCAATC
ATCATCAAACTTCAGCTGCAGCTTCTCCACCGGCTTAAGGTTCTCCAATT
CATCCTCGTCGCAGTCGTCCCAGAAGGCACGCGACGAGGGTATATTTAGT
TCTCCAAATCCTGGACAGCTCATGTCGACTGATAACT
BO07633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-PA | 708 | CG2046-RA | 1..705 | 723..19 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 893 | CG2046-RA | 96..800 | 723..19 | 3525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5793641..5794068 | 195..622 | 2140 | 100 | Plus |
3R | 32079331 | 3R | 5793401..5793577 | 19..195 | 885 | 100 | Plus |
3R | 32079331 | 3R | 5794121..5794222 | 622..723 | 510 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 07:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 1743..1806 | 487..426 | 116 | 68.8 | Minus |
BO07633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:37 Download gff for
BO07633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 16..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:08 Download gff for
BO07633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 16..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:49 Download gff for
BO07633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 8..731 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:05 Download gff for
BO07633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 8..731 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:05 Download gff for
BO07633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5793391..5793576 | 8..194 | 97 | <- | Plus |
3R | 5793641..5794068 | 195..622 | 100 | <- | Plus |
3R | 5794122..5794230 | 623..731 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:49 Download gff for
BO07633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1619113..1619298 | 8..194 | 97 | <- | Plus |
arm_3R | 1619363..1619790 | 195..622 | 100 | <- | Plus |
arm_3R | 1619844..1619952 | 623..731 | 97 | | Plus |
BO07633.5prime Sequence
737 bp (736 high quality bases) assembled on 2006-01-06
> BO07633.5prime
GAAGTTATCAGTCGACATGAGCTGTCCAGGATTTGGAGAACTAAATATAC
CCTCGTCGCGTGCCTTCTGGGACGACTGCGACGAGGATGAATTGGAGAAC
CTTAAGCCGGTGGAGAAGCTGCAGCTGAAGTTTGATGATGATTGCGATGG
GGAAGCTGCCCCTGTGGAGAGCGAGATGCTGGTGGTCATTGAGGGCGTCA
ACGTCACTCACTTCGCCTCTTCTCTGCTGGAAAAGGATGCAAAGCGTGTG
TGCGCCATTCCTGCCAATAACTCGACCCTGCACTGGAGTCATTCGTCCAA
ACAGTTGCTGGCCATAATCAACGAGGACCTGACCAGTAGCGGCGAGGTAG
CGGAGCTCCTACTGCCGTACGTGAAGCTTGCCAAGAAAGTGATCACTCTG
ACGCTTAAGCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCTCTACCG
GGATCACATTGCCGTTGTCCGCGGCATAGGTGCCAACCAGAAGGATATCA
CTGAACTAGAGGCTCCCAACTTTATCGCTGGAGTTGCAGCAGGCGTTGCC
AGTTGGCGGGATCAGATGGAATTGCCTGTTACCTCTTTCGTTATTTACAC
CGACAAGCTGCCCCTCGACGCCACAGCTGCGCAGCCAGTGATCAAGGTAC
TTAAAGCCGCGGGCGTTGCCTGCAGCTCGAGCTACATCCCTCCGCGGAAG
GAGAGCTCTTATTTGTACATGGCAAGCTTTCTAGACC
BO07633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-PA | 708 | CG2046-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 893 | CG2046-RA | 96..800 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5793641..5794068 | 545..118 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 5793401..5793577 | 721..545 | 885 | 100 | Minus |
3R | 32079331 | 3R | 5794121..5794222 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 16:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 1743..1806 | 253..314 | 116 | 68.8 | Plus |
BO07633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:38 Download gff for
BO07633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:09 Download gff for
BO07633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-PA | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:12 Download gff for
BO07633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 9..732 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:59:38 Download gff for
BO07633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 88..810 | 9..732 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:59:38 Download gff for
BO07633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5793391..5793576 | 546..732 | 97 | <- | Minus |
3R | 5793641..5794068 | 118..545 | 100 | <- | Minus |
3R | 5794122..5794230 | 9..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:12 Download gff for
BO07633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1619113..1619298 | 546..732 | 97 | <- | Minus |
arm_3R | 1619363..1619790 | 118..545 | 100 | <- | Minus |
arm_3R | 1619844..1619952 | 9..117 | 97 | | Minus |
BO07633.complete Sequence
739 bp (739 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630869
> BO07633.complete
GAAGTTATCAGTCGACATGAGCTGTCCAGGATTTGGAGAACTAAATATAC
CCTCGTCGCGTGCCTTCTGGGACGACTGCGACGAGGATGAATTGGAGAAC
CTTAAGCCGGTGGAGAAGCTGCAGCTGAAGTTTGATGATGATTGCGATGG
GGAAGCTGCCCCTGTGGAGAGCGAGATGCTGGTGGTCATTGAGGGCGTCA
ACGTCACTCACTTCGCCTCTTCTCTGCTGGAAAAGGATGCAAAGCGTGTG
TGCGCCATTCCTGCCAATAACTCGACCCTGCACTGGAGTCATTCGTCCAA
ACAGTTGCTGGCCATAATCAACGAGGACCTGACCAGTAGCGGCGAGGTAG
CGGAGCTCCTACTGCCGTACGTGAAGCTTGCCAAGAAAGTGATCACTCTG
ACGCTTAAGCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCTCTACCG
GGATCACATTGCCGTTGTCCGCGGCATAGGTGCCAACCAGAAGGATATCA
CTGAACTAGAGGCTCCCAACTTTATCGCTGGAGTTGCAGCAGGCGTTGCC
AGTTGGCGGGATCAGATGGAATTGCCTGTTACCTCTTTCGTTATTTACAC
CGACAAGCTGCCCCTCGACGCCACAGCTGCGCAGCCAGTGATCAAGGTAC
TTAAAGCCGCGGGCGTTGCCTGCAGCTCGAGCTACATCCCTCCGCGGAAG
GAGAGCTCTTATTTGTACATGGCAAGCTTTCTAGACCAT
BO07633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 708 | CG2046-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-RA | 893 | CG2046-RA | 96..800 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5793641..5794068 | 545..118 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 5793401..5793577 | 721..545 | 885 | 100 | Minus |
3R | 32079331 | 3R | 5794121..5794222 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 1743..1806 | 253..314 | 116 | 68.8 | Plus |
BO07633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:40 Download gff for
BO07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:52 Download gff for
BO07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 102..824 | 9..732 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:51 Download gff for
BO07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 96..800 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:40 Download gff for
BO07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 102..824 | 9..732 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:00 Download gff for
BO07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2046-RA | 96..800 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:00 Download gff for
BO07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5793398..5793576 | 546..723 | 98 | <- | Minus |
3R | 5793641..5794068 | 118..545 | 100 | <- | Minus |
3R | 5794122..5794222 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:51 Download gff for
BO07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1619120..1619298 | 546..723 | 98 | <- | Minus |
arm_3R | 1619363..1619790 | 118..545 | 100 | <- | Minus |
arm_3R | 1619844..1619944 | 17..117 | 100 | | Minus |
BO07633.pep Sequence
Translation from 16 to 739
> BO07633.pep
MSCPGFGELNIPSSRAFWDDCDEDELENLKPVEKLQLKFDDDCDGEAAPV
ESEMLVVIEGVNVTHFASSLLEKDAKRVCAIPANNSTLHWSHSSKQLLAI
INEDLTSSGEVAELLLPYVKLAKKVITLTLKPKVEFKSEDIQLYRDHIAV
VRGIGANQKDITELEAPNFIAGVAAGVASWRDQMELPVTSFVIYTDKLPL
DATAAQPVIKVLKAAGVACSSSYIPPRKESSYLYMASFLDH
BO07633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2046-PA | 235 | CG2046-PA | 1..235 | 1..235 | 1202 | 100 | Plus |