Clone Sequence Records
BO07634.3prime Sequence
919 bp (843 high quality bases) assembled on 2006-01-06
> BO07634.3prime
ATGGTCTAGAAAGCTTGCAAACAATAAATCTTTGTTGTCGTCATAGAGGC
TCTCCCAGACCTTCAATTTGGGCCACTCAGGCAGATCGATGAACTTCAGG
TCATCACTGATGTTGAGGCACTTGATGACCTCGTCGGATTTGCGAACTGG
ATCAATGGTCAGAGTGTCCATACCGTTGATCTTCTCGCTGTAGGGATTAC
CCGTGGCAGCAAACTGGGTCCAGATGCCCACGGTTCGTTCGATGTTCCTG
TACTCGCGACTTTCCTTCGGCAACCGGCGAGCCAGCAGGCTGCTGAATTG
GTAGCTCAAATCGTCGGCATGGCTGACCCCCTTGACACCGCGTCCCAACC
GCATAATGCGGTACGGAAAAATGAGCTCCTCGGAGTCGAAGTCATATCGA
TAGAAATATACTGGAGCTCCAGCCGCGTACGCGTGTCGGGAATGGACCAC
CCTCAGGGCCGGAAACACGAAGTAGTAAATCGAACAGAGATCCATGTAAT
TATCTGGGGTGCTTTCTGAGCCAGTGCGATGAACATCTCGAATCTGTGCA
CTCCACGAATCCAGTTTTTCTTTACTGGGCTCCGTGGCCAGCAATTCTTT
GGGAATGAAAGGTGTGCCAGCATCAAGCTGCTGCAGCACCTGCGGCATAA
GCTTTACCTCTGGAACCCACAGCAGGCCCTCGTACGAAGTGTTTCCTATA
AACATGGGGATGGAGTTACTCCAGGCGGTCTTCATCATCTCCTTTGGAGG
CTTGGATATCACACATTCGGGCGTGGAGAATGGTTCCAGGGATGGGCCAA
AGGCAAACATTATCTTGTTCATGCGTTCCTCCAGTGTCAGGACATTTTCC
TCCACGCGAATAAGATCCTTGGCCTTTACGTTCTGCAAGAACTCCAGCAC
ATCCCTTGTCGTTGTCCTC
BO07634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1112-PA | 1719 | alpha-Est7-RA | 831..1716 | 904..19 | 4430 | 100 | Minus |
| CG1112-PB | 1194 | alpha-Est7-RB | 472..1191 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est7-RA | 2017 | CG1112-RA | 927..1826 | 919..19 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7519754..7520224 | 19..489 | 2355 | 100 | Plus |
| 3R | 32079331 | 3R | 7520512..7520770 | 660..919 | 1250 | 99.6 | Plus |
| 3R | 32079331 | 3R | 7520280..7520452 | 490..662 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:03:42 has no hits.
BO07634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:39 Download gff for
BO07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1112-PA | 817..1719 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:10 Download gff for
BO07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1112-PA | 817..1719 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:55 Download gff for
BO07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 927..1833 | 10..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:45 Download gff for
BO07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 927..1833 | 10..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:45 Download gff for
BO07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7519747..7520224 | 10..489 | 99 | <- | Plus |
| 3R | 7520280..7520449 | 490..659 | 100 | <- | Plus |
| 3R | 7520512..7520770 | 660..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:55 Download gff for
BO07634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3345469..3345946 | 10..489 | 99 | <- | Plus |
| arm_3R | 3346002..3346171 | 490..659 | 100 | <- | Plus |
| arm_3R | 3346234..3346492 | 660..919 | 99 | | Plus |
BO07634.5prime Sequence
823 bp (814 high quality bases) assembled on 2006-01-06
> BO07634.5prime
GAAGTTATCAGTCGACATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGC
GGTGGCGCCTCAAAACCATCGAGCATAAAGTCCAGCAGTATCGCCAGTCG
ACCAATGAAACAGTTGTCGCCGACACGGAGTACGGCCAAGTGAGGGGTAT
CAAGCGTCTATCTCTCTACGATGTGCCCTACTTCAGCTTCGAGGGTATCC
CGTACGCCCAGCCTCCGGTGGGGGAGTTGCGGTTTAAGGCCCCTCAGAGG
CCCATTCCCTGGGAGCGAGTTCGCGACTGCAGCCAGCCGAAGGATAAGGC
CGTCCAGGTGCAGTTCGTCTTCGATAAGGTAGAGGGCTCCGAGGACTGCC
TCTATCTCAATGTGTACACCAACAATGTGAAGCCCGACAAGGCTCGCCCG
GTTATGGTTTGGATTCACGGAGGAGGCTTCATTATCGGCGAGGCCAATCG
GGAATGGTATGGCCCGGATTACTTTATGAAAGAAGATGTTGTTCTCGTCA
CGATACAGTACCGACTTGGGGCTTTGGGATTTATGAGTCTTAAGTCCCCC
GAGCTAAATGTACCAGGAAATGCTGGCCTCAAGGATCAGGTGCTGGCCCT
CAAGTGGATCAAGAACAATTGCGCTAGTTTCGGCGGAGATCCCAACTGCA
TCACTGTTTTTGGAGAGAGTGCTGGAGGCGCCTCCACTCACTACATGATG
CTAACCGATCAGACCCAAGGGCTCTTTCATCGCGGCATCTTGCAGTCGGG
CAGTGCCATTTGTCCTTGGGCCTACAACGGCGACATTACCCATAATCCCT
ACAGGATAGCCAAGCTGGTTGGC
BO07634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1112-PA | 1719 | alpha-Est7-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG1112-PB | 1194 | alpha-Est7-RB | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est7-RA | 2017 | CG1112-RA | 107..917 | 13..823 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7521366..7521682 | 380..64 | 1585 | 100 | Minus |
| 3R | 32079331 | 3R | 7520780..7521076 | 823..527 | 1485 | 100 | Minus |
| 3R | 32079331 | 3R | 7521133..7521284 | 528..377 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 7523597..7523647 | 63..13 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:33:43 has no hits.
BO07634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:40 Download gff for
BO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1112-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:12 Download gff for
BO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1112-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:18 Download gff for
BO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 101..917 | 8..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:46:43 Download gff for
BO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 101..917 | 8..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:46:43 Download gff for
BO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7520780..7521075 | 528..823 | 100 | <- | Minus |
| 3R | 7521134..7521284 | 377..527 | 100 | <- | Minus |
| 3R | 7521370..7521682 | 64..376 | 100 | <- | Minus |
| 3R | 7523597..7523653 | 8..63 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:18 Download gff for
BO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3346502..3346797 | 528..823 | 100 | <- | Minus |
| arm_3R | 3346856..3347006 | 377..527 | 100 | <- | Minus |
| arm_3R | 3347092..3347404 | 64..376 | 100 | <- | Minus |
| arm_3R | 3349319..3349375 | 8..63 | 94 | | Minus |
BO07634.complete Sequence
1750 bp (1750 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630870
> BO07634.complete
GAAGTTATCAGTCGACATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGC
GGTGGCGCCTCAAAACCATCGAGCATAAAGTCCAGCAGTATCGCCAGTCG
ACCAATGAAACAGTTGTCGCCGACACGGAGTACGGCCAAGTGAGGGGTAT
CAAGCGTCTATCTCTCTACGATGTGCCCTACTTCAGCTTCGAGGGTATCC
CGTACGCCCAGCCTCCGGTGGGGGAGTTGCGGTTTAAGGCCCCTCAGAGG
CCCATTCCCTGGGAGCGAGTTCGCGACTGCAGCCAGCCGAAGGATAAGGC
CGTCCAGGTGCAGTTCGTCTTCGATAAGGTAGAGGGCTCCGAGGACTGCC
TCTATCTCAATGTGTACACCAACAATGTGAAGCCCGACAAGGCTCGCCCG
GTTATGGTTTGGATTCACGGAGGAGGCTTCATTATCGGCGAGGCCAATCG
GGAATGGTATGGCCCGGATTACTTTATGAAAGAAGATGTTGTTCTCGTCA
CGATACAGTACCGACTTGGGGCTTTGGGATTTATGAGTCTTAAGTCCCCC
GAGCTAAATGTACCAGGAAATGCTGGCCTCAAGGATCAGGTGCTGGCCCT
CAAGTGGATCAAGAACAATTGCGCTAGTTTCGGCGGAGATCCCAACTGCA
TCACTGTTTTTGGAGAGAGTGCTGGAGGCGCCTCCACTCACTACATGATG
CTAACCGATCAGACCCAAGGGCTCTTTCATCGCGGCATCTTGCAGTCGGG
CAGTGCCATTTGTCCTTGGGCCTACAACGGCGACATTACCCATAATCCCT
ACAGGATAGCCAAGCTGGTTGGCTACAAGGGCGAGGACAACGACAAGGAT
GTGCTGGAGTTCTTGCAGAACGTAAAGGCCAAGGATCTTATTCGCGTGGA
GGAAAATGTCCTGACACTGGAGGAACGCATGAACAAGATAATGTTTGCCT
TTGGCCCATCCCTGGAACCATTCTCCACGCCCGAATGTGTGATATCCAAG
CCTCCAAAGGAGATGATGAAGACCGCCTGGAGTAACTCCATCCCCATGTT
TATAGGAAACACTTCGTACGAGGGCCTGCTGTGGGTTCCAGAGGTAAAGC
TTATGCCGCAGGTGCTGCAGCAGCTTGATGCTGGCACACCTTTCATTCCC
AAAGAATTGCTGGCCACGGAGCCCAGTAAAGAAAAACTGGATTCGTGGAG
TGCACAGATTCGAGATGTTCATCGCACTGGCTCAGAAAGCACCCCAGATA
ATTACATGGATCTCTGTTCGATTTACTACTTCGTGTTTCCGGCCCTGAGG
GTGGTCCATTCCCGACACGCGTACGCGGCTGGAGCTCCAGTATATTTCTA
TCGATATGACTTCGACTCCGAGGAGCTCATTTTTCCGTACCGCATTATGC
GGTTGGGACGCGGTGTCAAGGGGGTCAGCCATGCCGACGATTTGAGCTAC
CAATTCAGCAGCCTGCTGGCTCGCCGGTTGCCGAAGGAAAGTCGCGAGTA
CAGGAACATCGAACGAACCGTGGGCATCTGGACCCAGTTTGCTGCCACGG
GTAATCCCTACAGCGAGAAGATCAACGGTATGGACACTCTGACCATTGAT
CCAGTTCGCAAATCCGACGAGGTCATCAAGTGCCTCAACATCAGTGATGA
CCTGAAGTTCATCGATCTGCCTGAGTGGCCCAAATTGAAGGTCTGGGAGA
GCCTCTATGACGACAACAAAGATTTATTGTTTGCAAGCTTTCTAGACCAT
BO07634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est7-RA | 1719 | CG1112-PA | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est7-RA | 2017 | CG1112-RA | 107..1826 | 13..1732 | 8585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7520512..7521076 | 1091..527 | 2825 | 100 | Minus |
| 3R | 32079331 | 3R | 7519754..7520224 | 1732..1262 | 2355 | 100 | Minus |
| 3R | 32079331 | 3R | 7521366..7521682 | 380..64 | 1585 | 100 | Minus |
| 3R | 32079331 | 3R | 7520280..7520452 | 1261..1089 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 7521133..7521284 | 528..377 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 7523597..7523647 | 63..13 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:58:02 has no hits.
BO07634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:33 Download gff for
BO07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 1..1719 | 17..1736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:19 Download gff for
BO07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 102..1834 | 8..1741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:53 Download gff for
BO07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 111..1826 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:33 Download gff for
BO07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 102..1834 | 8..1741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:03 Download gff for
BO07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 111..1826 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:03 Download gff for
BO07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7521370..7521682 | 64..376 | 100 | <- | Minus |
| 3R | 7523597..7523643 | 17..63 | 100 | | Minus |
| 3R | 7520280..7520449 | 1092..1261 | 100 | <- | Minus |
| 3R | 7519752..7520224 | 1262..1734 | 99 | <- | Minus |
| 3R | 7520512..7521075 | 528..1091 | 100 | <- | Minus |
| 3R | 7521134..7521284 | 377..527 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:53 Download gff for
BO07634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3345474..3345946 | 1262..1734 | 99 | <- | Minus |
| arm_3R | 3346002..3346171 | 1092..1261 | 100 | <- | Minus |
| arm_3R | 3346234..3346797 | 528..1091 | 100 | <- | Minus |
| arm_3R | 3346856..3347006 | 377..527 | 100 | <- | Minus |
| arm_3R | 3347092..3347404 | 64..376 | 100 | <- | Minus |
| arm_3R | 3349319..3349365 | 17..63 | 100 | | Minus |
BO07634.pep Sequence
Translation from 16 to 1750
> BO07634.pep
MNKNLGFVERLRWRLKTIEHKVQQYRQSTNETVVADTEYGQVRGIKRLSL
YDVPYFSFEGIPYAQPPVGELRFKAPQRPIPWERVRDCSQPKDKAVQVQF
VFDKVEGSEDCLYLNVYTNNVKPDKARPVMVWIHGGGFIIGEANREWYGP
DYFMKEDVVLVTIQYRLGALGFMSLKSPELNVPGNAGLKDQVLALKWIKN
NCASFGGDPNCITVFGESAGGASTHYMMLTDQTQGLFHRGILQSGSAICP
WAYNGDITHNPYRIAKLVGYKGEDNDKDVLEFLQNVKAKDLIRVEENVLT
LEERMNKIMFAFGPSLEPFSTPECVISKPPKEMMKTAWSNSIPMFIGNTS
YEGLLWVPEVKLMPQVLQQLDAGTPFIPKELLATEPSKEKLDSWSAQIRD
VHRTGSESTPDNYMDLCSIYYFVFPALRVVHSRHAYAAGAPVYFYRYDFD
SEELIFPYRIMRLGRGVKGVSHADDLSYQFSSLLARRLPKESREYRNIER
TVGIWTQFAATGNPYSEKINGMDTLTIDPVRKSDEVIKCLNISDDLKFID
LPEWPKLKVWESLYDDNKDLLFASFLDH
BO07634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est7-PA | 572 | CG1112-PA | 1..572 | 1..572 | 3055 | 100 | Plus |
| alpha-Est9-PC | 569 | CG1128-PC | 14..563 | 15..564 | 1420 | 50.8 | Plus |
| alpha-Est8-PA | 574 | CG1121-PA | 1..574 | 1..572 | 1392 | 47.8 | Plus |
| alpha-Est9-PD | 587 | CG1128-PD | 14..581 | 15..564 | 1391 | 49.2 | Plus |
| CG6018-PA | 566 | CG6018-PA | 1..560 | 1..564 | 1304 | 47.5 | Plus |
