Clone Sequence Records
BO07639.3prime Sequence
845 bp (772 high quality bases) assembled on 2006-01-06
> BO07639.3prime
ATGGTCTAGAAAGCTTGCGACACTTTTGTTGATCAGTTTCTTGCGAATGG
TCTCGTCCAGCGGTGGAATCGCCTCGCGGGGAATCAGAAAAGTGGACAGA
TTGAACAGATCCAGAAACACCTTGTACCGATCACTGAGAGTGGAGCGCAG
ATATTGATATCCAGACGAGCCACCAGTGCCCAACTGTTGGGATCCAATCA
TGCGTTGCACCATGATCACGTGATTGTATCTCCACTTGGTTATTAACGAG
TCGATGTCCATGAGCAGGGTGAGCAACTGGTGTGGCTGGCTGAATCTGGG
TTCATCCCTATAGAAGGTGATCATGATGGCTCCCTGGAGGGCACGATGGC
TAAACCGGCGATCCCCACGTCGCACCAGTGCATCGTGCACTGCCGGATCA
AAGATGGAGCGATACACCTCGCGTCGCTTCTCAATGTCCATGAGGCGGTA
GTTTTTCGCCTTCTCCACGGGCTCCTCCATGGCGCTCTGTACCTGCGCCT
CCAGGAATCGATCGACGCTCTCCTGAAACTTGGCCCAGAAGTTGAAGCCA
CTCTCCTCCAGTCCGGGCGTCCTCTCCAGCCATCGCTGCACTAGCTCCAG
TAGCGAGGGATCTTTCTCCGAGTTGCGAATCGAATTCCGCGCCTCCTCGT
CGCTAAAGACATCCGAGTACTTCTGGTTGTATCTCACCCGCTGCTCTGTC
AGAACTCCCAGCTTGTTCTCGATCAAACGGAACTGCAGCGACTGGAAACC
AGATGCGGGTGCCAGGTACTTGCGGAAGTCCATGAAGTCAAGCGGGGTCA
TGGTCTCCAGAATGGGCACTTGGTCCACCAGGAGTTTTAGAATCA
BO07639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2155-PA | 1140 | v-RA | 311..1137 | 845..19 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1305 | CG2155-RA | 367..1193 | 845..19 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10924536..10925142 | 834..228 | 3035 | 100 | Minus |
X | 23542271 | X | 10925401..10925519 | 137..19 | 595 | 100 | Minus |
X | 23542271 | X | 10925234..10925327 | 227..134 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:53:17 has no hits.
BO07639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:24:49 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:26 Download gff for
BO07639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2155-PA | 312..1140 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:43 Download gff for
BO07639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 368..1199 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:11 Download gff for
BO07639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 368..1199 | 15..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:11 Download gff for
BO07639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10925405..10925525 | 15..133 | 98 | | Minus |
X | 10924526..10925142 | 228..844 | 99 | -> | Minus |
X | 10925234..10925327 | 134..227 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:43 Download gff for
BO07639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10819438..10819558 | 15..133 | 98 | | Minus |
arm_X | 10818559..10819175 | 228..844 | 99 | -> | Minus |
arm_X | 10819267..10819360 | 134..227 | 100 | -> | Minus |
BO07639.5prime Sequence
962 bp (869 high quality bases) assembled on 2006-01-06
> BO07639.5prime
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGNGGATCGCCGGTTTAGCCATCGTGCCCTCCAGGGAGCCATCATG
ATCACCTTCTATAGGGATGAAACCAGATTCAGCCAGCCACACCAGTTGCT
CACCCTGCTCATGGACATCGACTCGTTTATACCCAAGTGGAGATACAATC
ACGTGATCATGG
BO07639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2155-PA | 1140 | v-RA | 1..946 | 17..962 | 4636 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1305 | CG2155-RA | 56..1002 | 16..962 | 4679 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10924536..10925142 | 338..944 | 2979 | 99.3 | Plus |
X | 23542271 | X | 10924126..10924287 | 42..203 | 810 | 100 | Plus |
X | 23542271 | X | 10924347..10924481 | 203..337 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:15:53 has no hits.
BO07639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:24:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:27 Download gff for
BO07639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2155-PA | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:51 Download gff for
BO07639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 56..1002 | 16..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:28 Download gff for
BO07639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 56..1002 | 16..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:28 Download gff for
BO07639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10924027..10924053 | 16..42 | 100 | -> | Plus |
X | 10924127..10924287 | 43..203 | 100 | -> | Plus |
X | 10924348..10924481 | 204..337 | 100 | -> | Plus |
X | 10924536..10925142 | 338..944 | 99 | -> | Plus |
X | 10925234..10925251 | 945..962 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:51 Download gff for
BO07639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10818381..10818514 | 204..337 | 100 | -> | Plus |
arm_X | 10818060..10818086 | 16..42 | 100 | -> | Plus |
arm_X | 10818160..10818320 | 43..203 | 100 | -> | Plus |
arm_X | 10818569..10819175 | 338..944 | 99 | -> | Plus |
arm_X | 10819267..10819284 | 945..962 | 100 | | Plus |
BO07639.complete Sequence
1171 bp (1171 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630871
> BO07639.complete
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGGGGATCGCCGGTTTAGCCATCGTGCCCTCCAGGGAGCCATCATG
ATCACCTTCTATAGGGATGAACCCAGATTCAGCCAGCCACACCAGTTGCT
CACCCTGCTCATGGACATCGACTCGTTAATAACCAAGTGGAGATACAATC
ACGTGATCATGGTGCAACGCATGATTGGATCCCAACAGTTGGGCACTGGT
GGCTCGTCTGGATATCAATATCTGCGCTCCACTCTCAGTGATCGGTACAA
GGTGTTTCTGGATCTGTTCAATCTGTCCACTTTTCTGATTCCCCGCGAGG
CGATTCCACCGCTGGACGAGACCATTCGCAAGAAACTGATCAACAAAAGT
GTCGCAAGCTTTCTAGACCAT
BO07639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1140 | CG2155-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-RA | 1305 | CG2155-RA | 56..1193 | 16..1153 | 5690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10924536..10925142 | 338..944 | 3035 | 100 | Plus |
X | 23542271 | X | 10924126..10924287 | 42..203 | 810 | 100 | Plus |
X | 23542271 | X | 10924347..10924481 | 203..337 | 675 | 100 | Plus |
X | 23542271 | X | 10925401..10925519 | 1035..1153 | 595 | 100 | Plus |
X | 23542271 | X | 10925234..10925327 | 945..1038 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:15 has no hits.
BO07639.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:32 Download gff for
BO07639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 1..1140 | 17..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:21 Download gff for
BO07639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 38..1181 | 16..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:55 Download gff for
BO07639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 57..1193 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:32 Download gff for
BO07639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 38..1181 | 16..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:20 Download gff for
BO07639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
v-RA | 57..1193 | 17..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:20 Download gff for
BO07639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10925405..10925519 | 1039..1155 | 98 | | Plus |
X | 10924028..10924053 | 17..42 | 100 | -> | Plus |
X | 10924127..10924287 | 43..203 | 100 | -> | Plus |
X | 10924348..10924481 | 204..337 | 100 | -> | Plus |
X | 10924536..10925142 | 338..944 | 100 | -> | Plus |
X | 10925234..10925327 | 945..1038 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:55 Download gff for
BO07639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10818061..10818086 | 17..42 | 100 | -> | Plus |
arm_X | 10818160..10818320 | 43..203 | 100 | -> | Plus |
arm_X | 10818381..10818514 | 204..337 | 100 | -> | Plus |
arm_X | 10818569..10819175 | 338..944 | 100 | -> | Plus |
arm_X | 10819267..10819360 | 945..1038 | 100 | -> | Plus |
arm_X | 10819438..10819552 | 1039..1155 | 98 | | Plus |
BO07639.pep Sequence
Translation from 16 to 1171
> BO07639.pep
MSCPYAGNGNDHDDSAVPLTTEVGKIYGEYLMLDKLLDAQCMLSEEDKRP
VHDEHLFIITHQAYELWFKQIIFEFDSIRDMLDAEVIDETKTLEIVKRLN
RVVLILKLLVDQVPILETMTPLDFMDFRKYLAPASGFQSLQFRLIENKLG
VLTEQRVRYNQKYSDVFSDEEARNSIRNSEKDPSLLELVQRWLERTPGLE
ESGFNFWAKFQESVDRFLEAQVQSAMEEPVEKAKNYRLMDIEKRREVYRS
IFDPAVHDALVRRGDRRFSHRALQGAIMITFYRDEPRFSQPHQLLTLLMD
IDSLITKWRYNHVIMVQRMIGSQQLGTGGSSGYQYLRSTLSDRYKVFLDL
FNLSTFLIPREAIPPLDETIRKKLINKSVASFLDH
BO07639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
v-PA | 379 | CG2155-PA | 1..379 | 1..379 | 1950 | 100 | Plus |