Clone BO07639 Report

Search the DGRC for BO07639

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptv-RA
Protein status:BO07639.pep: validated full length
Sequenced Size:1171

Clone Sequence Records

BO07639.3prime Sequence

845 bp (772 high quality bases) assembled on 2006-01-06

> BO07639.3prime
ATGGTCTAGAAAGCTTGCGACACTTTTGTTGATCAGTTTCTTGCGAATGG
TCTCGTCCAGCGGTGGAATCGCCTCGCGGGGAATCAGAAAAGTGGACAGA
TTGAACAGATCCAGAAACACCTTGTACCGATCACTGAGAGTGGAGCGCAG
ATATTGATATCCAGACGAGCCACCAGTGCCCAACTGTTGGGATCCAATCA
TGCGTTGCACCATGATCACGTGATTGTATCTCCACTTGGTTATTAACGAG
TCGATGTCCATGAGCAGGGTGAGCAACTGGTGTGGCTGGCTGAATCTGGG
TTCATCCCTATAGAAGGTGATCATGATGGCTCCCTGGAGGGCACGATGGC
TAAACCGGCGATCCCCACGTCGCACCAGTGCATCGTGCACTGCCGGATCA
AAGATGGAGCGATACACCTCGCGTCGCTTCTCAATGTCCATGAGGCGGTA
GTTTTTCGCCTTCTCCACGGGCTCCTCCATGGCGCTCTGTACCTGCGCCT
CCAGGAATCGATCGACGCTCTCCTGAAACTTGGCCCAGAAGTTGAAGCCA
CTCTCCTCCAGTCCGGGCGTCCTCTCCAGCCATCGCTGCACTAGCTCCAG
TAGCGAGGGATCTTTCTCCGAGTTGCGAATCGAATTCCGCGCCTCCTCGT
CGCTAAAGACATCCGAGTACTTCTGGTTGTATCTCACCCGCTGCTCTGTC
AGAACTCCCAGCTTGTTCTCGATCAAACGGAACTGCAGCGACTGGAAACC
AGATGCGGGTGCCAGGTACTTGCGGAAGTCCATGAAGTCAAGCGGGGTCA
TGGTCTCCAGAATGGGCACTTGGTCCACCAGGAGTTTTAGAATCA

BO07639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2155-PA 1140 v-RA 311..1137 845..19 4135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1305 CG2155-RA 367..1193 845..19 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10924536..10925142 834..228 3035 100 Minus
X 23542271 X 10925401..10925519 137..19 595 100 Minus
X 23542271 X 10925234..10925327 227..134 470 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:53:17 has no hits.

BO07639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:24:49 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:26 Download gff for BO07639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2155-PA 312..1140 16..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:43 Download gff for BO07639.3prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 368..1199 15..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:11 Download gff for BO07639.3prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 368..1199 15..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:11 Download gff for BO07639.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10925405..10925525 15..133 98   Minus
X 10924526..10925142 228..844 99 -> Minus
X 10925234..10925327 134..227 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:43 Download gff for BO07639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10819438..10819558 15..133 98   Minus
arm_X 10818559..10819175 228..844 99 -> Minus
arm_X 10819267..10819360 134..227 100 -> Minus

BO07639.5prime Sequence

962 bp (869 high quality bases) assembled on 2006-01-06

> BO07639.5prime
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGNGGATCGCCGGTTTAGCCATCGTGCCCTCCAGGGAGCCATCATG
ATCACCTTCTATAGGGATGAAACCAGATTCAGCCAGCCACACCAGTTGCT
CACCCTGCTCATGGACATCGACTCGTTTATACCCAAGTGGAGATACAATC
ACGTGATCATGG

BO07639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2155-PA 1140 v-RA 1..946 17..962 4636 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1305 CG2155-RA 56..1002 16..962 4679 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10924536..10925142 338..944 2979 99.3 Plus
X 23542271 X 10924126..10924287 42..203 810 100 Plus
X 23542271 X 10924347..10924481 203..337 675 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:15:53 has no hits.

BO07639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:24:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:27 Download gff for BO07639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2155-PA 1..946 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:51 Download gff for BO07639.5prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 56..1002 16..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:28 Download gff for BO07639.5prime
Subject Subject Range Query Range Percent Splice Strand
v-RA 56..1002 16..962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:28 Download gff for BO07639.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10924027..10924053 16..42 100 -> Plus
X 10924127..10924287 43..203 100 -> Plus
X 10924348..10924481 204..337 100 -> Plus
X 10924536..10925142 338..944 99 -> Plus
X 10925234..10925251 945..962 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:51 Download gff for BO07639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10818381..10818514 204..337 100 -> Plus
arm_X 10818060..10818086 16..42 100 -> Plus
arm_X 10818160..10818320 43..203 100 -> Plus
arm_X 10818569..10819175 338..944 99 -> Plus
arm_X 10819267..10819284 945..962 100   Plus

BO07639.complete Sequence

1171 bp (1171 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630871

> BO07639.complete
GAAGTTATCAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATC
ACGATGATTCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGA
GAGTATCTGATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGA
GGAGGACAAGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACC
AGGCCTACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATA
CGAGACATGTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGAT
TGTCAAGCGACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACC
AAGTGCCCATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGC
AAGTACCTGGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGAT
CGAGAACAAGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGA
AGTACTCGGATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAAC
TCGGAGAAAGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAG
GACGCCCGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGG
AGAGCGTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAG
CCCGTGGAGAAGGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACG
CGAGGTGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGC
GACGTGGGGATCGCCGGTTTAGCCATCGTGCCCTCCAGGGAGCCATCATG
ATCACCTTCTATAGGGATGAACCCAGATTCAGCCAGCCACACCAGTTGCT
CACCCTGCTCATGGACATCGACTCGTTAATAACCAAGTGGAGATACAATC
ACGTGATCATGGTGCAACGCATGATTGGATCCCAACAGTTGGGCACTGGT
GGCTCGTCTGGATATCAATATCTGCGCTCCACTCTCAGTGATCGGTACAA
GGTGTTTCTGGATCTGTTCAATCTGTCCACTTTTCTGATTCCCCGCGAGG
CGATTCCACCGCTGGACGAGACCATTCGCAAGAAACTGATCAACAAAAGT
GTCGCAAGCTTTCTAGACCAT

BO07639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1140 CG2155-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
v-RA 1305 CG2155-RA 56..1193 16..1153 5690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10924536..10925142 338..944 3035 100 Plus
X 23542271 X 10924126..10924287 42..203 810 100 Plus
X 23542271 X 10924347..10924481 203..337 675 100 Plus
X 23542271 X 10925401..10925519 1035..1153 595 100 Plus
X 23542271 X 10925234..10925327 945..1038 470 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:45:15 has no hits.

BO07639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:32 Download gff for BO07639.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 1..1140 17..1156 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:21 Download gff for BO07639.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 38..1181 16..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:55 Download gff for BO07639.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 57..1193 17..1155 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:32 Download gff for BO07639.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 38..1181 16..1157 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:20 Download gff for BO07639.complete
Subject Subject Range Query Range Percent Splice Strand
v-RA 57..1193 17..1155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:20 Download gff for BO07639.complete
Subject Subject Range Query Range Percent Splice Strand
X 10925405..10925519 1039..1155 98   Plus
X 10924028..10924053 17..42 100 -> Plus
X 10924127..10924287 43..203 100 -> Plus
X 10924348..10924481 204..337 100 -> Plus
X 10924536..10925142 338..944 100 -> Plus
X 10925234..10925327 945..1038 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:55 Download gff for BO07639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10818061..10818086 17..42 100 -> Plus
arm_X 10818160..10818320 43..203 100 -> Plus
arm_X 10818381..10818514 204..337 100 -> Plus
arm_X 10818569..10819175 338..944 100 -> Plus
arm_X 10819267..10819360 945..1038 100 -> Plus
arm_X 10819438..10819552 1039..1155 98   Plus

BO07639.pep Sequence

Translation from 16 to 1171

> BO07639.pep
MSCPYAGNGNDHDDSAVPLTTEVGKIYGEYLMLDKLLDAQCMLSEEDKRP
VHDEHLFIITHQAYELWFKQIIFEFDSIRDMLDAEVIDETKTLEIVKRLN
RVVLILKLLVDQVPILETMTPLDFMDFRKYLAPASGFQSLQFRLIENKLG
VLTEQRVRYNQKYSDVFSDEEARNSIRNSEKDPSLLELVQRWLERTPGLE
ESGFNFWAKFQESVDRFLEAQVQSAMEEPVEKAKNYRLMDIEKRREVYRS
IFDPAVHDALVRRGDRRFSHRALQGAIMITFYRDEPRFSQPHQLLTLLMD
IDSLITKWRYNHVIMVQRMIGSQQLGTGGSSGYQYLRSTLSDRYKVFLDL
FNLSTFLIPREAIPPLDETIRKKLINKSVASFLDH

BO07639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
v-PA 379 CG2155-PA 1..379 1..379 1950 100 Plus