Clone Sequence Records
BO07641.3prime Sequence
864 bp (786 high quality bases) assembled on 2006-01-06
> BO07641.3prime
ATGGTCTAGAAAGCTTGCCAAAATTGAGCGGTGAGGTGTCAAGGGTCTAG
CTGGGTGCTTGGACCACAAGTAGCGGTTCTTCACCGGCGACAAGTACGAA
TCCCGGGCCACGGGGCTCGAGGCACGGGGCACCGAGGTGGCGCGGAAGGG
CACCAGGTCATCCACGTCCCACCAGAAGGGATCGCGCACAATCGAGGAGA
TCGGCAAGTTGGGGCTGGGGCTCAGCAGATCCCTGAAGCGGTTGCGTGGG
TGAAAGATGGGGAGTCGTTCAAAGAGTTCGTCCAGCGGCTCCAGGGAGCT
GGCACGGAAGCTGGGCCGCGTGAACGGGGCCAAGCTGGTGGCACGATCGA
AGACCGAGGGTCCTCCGCGTGGCACGCTGCCCTCGCGGTTCCAGTAGCTC
GGCGGTGGCACGTACGGCTCGCTGCCGGCACGGGTCGTCCTGGCAGGGCG
GAACGGCGAGGCCGAGCGACGAGCCTTGTTGAGCTCAGCCAGCAGCTTGT
CCTCTGGCTCGTACTCCAGGGGCACCAGCGAGTTGGGCGTGAGTGGCTTG
TCCCTCAAGTAGAGACCATAGCGAGATGGGTACCTGCGCTCGATCTCCTG
CATGCGCTTCAGATGATCATTCCAGGCCTTCTCTGCGTCGTAGTTAGCTG
GAATTGTTCGGCTGTAGTGATGATCGTAGATGGCACGGGGCGAGTAGCCG
TAGGTGTCGCGGCTCACTGGCAGATATCTGTAGCCAGAGGACTGGACGCG
CTCATTGGCGGTGGCGGGCTCGTCATAGATGCTCCTGTAGGAGGGCGAGT
CCAGGTAGGAGCTGTAGGGACGAGAGGCACGGGGCGCCTCGTGGGCACGG
ATATCCTCGGAGCC
BO07641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6803-PD | 939 | Zeelin1-RD | 91..936 | 864..19 | 4230 | 100 | Minus |
| CG6803-PB | 1098 | Zeelin1-RB | 91..689 | 864..266 | 2995 | 100 | Minus |
| CG6803-PE | 501 | Zeelin1-RE | 91..484 | 864..471 | 1970 | 100 | Minus |
| CG6803-PC | 507 | Zeelin1-RC | 91..481 | 864..474 | 1955 | 100 | Minus |
| CG6803-PB | 1098 | Zeelin1-RB | 845..1077 | 266..34 | 1165 | 100 | Minus |
| CG6803-PA | 474 | Zeelin1-RA | 91..301 | 864..654 | 1055 | 100 | Minus |
| CG6803-PA | 474 | Zeelin1-RA | 302..462 | 632..472 | 805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RD | 1783 | CG6803-RD | 205..1050 | 864..19 | 4230 | 100 | Minus |
| Mf-RJ | 1954 | CG6803-RJ | 205..1035 | 864..34 | 4155 | 100 | Minus |
| Mf-RF | 2020 | CG6803-RF | 271..1101 | 864..34 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15172600..15172830 | 36..266 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 15178280..15178490 | 654..864 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 15174136..15174344 | 266..474 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 15176184..15176295 | 474..585 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 15176362..15176437 | 582..657 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:16:05 has no hits.
BO07641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:53 Download gff for
BO07641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 91..939 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:32 Download gff for
BO07641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 91..939 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:55 Download gff for
BO07641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 205..1053 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:17 Download gff for
BO07641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 205..1053 | 15..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:17 Download gff for
BO07641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15174137..15174343 | 267..473 | 100 | <- | Plus |
| 3R | 15176184..15176293 | 474..583 | 100 | <- | Plus |
| 3R | 15176364..15176433 | 584..653 | 100 | <- | Plus |
| 3R | 15178280..15178490 | 654..864 | 100 | | Plus |
| 3R | 15172600..15172830 | 36..266 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:55 Download gff for
BO07641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10998322..10998552 | 36..266 | 100 | <- | Plus |
| arm_3R | 10999859..11000065 | 267..473 | 100 | <- | Plus |
| arm_3R | 11001906..11002015 | 474..583 | 100 | <- | Plus |
| arm_3R | 11002086..11002155 | 584..653 | 100 | <- | Plus |
| arm_3R | 11004002..11004212 | 654..864 | 100 | | Plus |
BO07641.5prime Sequence
903 bp (734 high quality bases) assembled on 2006-01-06
> BO07641.5prime
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAG
CCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGT
GGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCC
TCGAGCCCCGTGGCCCGGGATTCGTACTTGTCGCCGGTGAAAAACGCTAC
TTG
BO07641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6803-PD | 939 | Zeelin1-RD | 1..875 | 17..891 | 4375 | 100 | Plus |
| CG6803-PB | 1098 | Zeelin1-RB | 1..689 | 17..705 | 3445 | 100 | Plus |
| CG6803-PE | 501 | Zeelin1-RE | 1..484 | 17..500 | 2420 | 100 | Plus |
| CG6803-PC | 507 | Zeelin1-RC | 1..481 | 17..497 | 2405 | 100 | Plus |
| CG6803-PA | 474 | Zeelin1-RA | 1..301 | 17..317 | 1505 | 100 | Plus |
| CG6803-PB | 1098 | Zeelin1-RB | 845..1031 | 705..891 | 935 | 100 | Plus |
| CG6803-PA | 474 | Zeelin1-RA | 302..462 | 339..499 | 805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RJ | 1954 | CG6803-RJ | 115..1002 | 17..903 | 4400 | 99.8 | Plus |
| Mf-RF | 2020 | CG6803-RF | 181..1068 | 17..903 | 4400 | 99.8 | Plus |
| Mf-RD | 1783 | CG6803-RD | 115..1002 | 17..903 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15174136..15174344 | 705..497 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 15172640..15172830 | 895..705 | 940 | 99.5 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:30:06 has no hits.
BO07641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:24:54 Download gff for
BO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:34 Download gff for
BO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6803-PD | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:01 Download gff for
BO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..1002 | 7..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:50 Download gff for
BO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..1002 | 7..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:50 Download gff for
BO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
| 3R | 15179039..15179139 | 7..107 | 96 | | Minus |
| 3R | 15172631..15172830 | 705..903 | 99 | <- | Minus |
| 3R | 15174137..15174343 | 498..704 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:01 Download gff for
BO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10998353..10998552 | 705..903 | 99 | <- | Minus |
| arm_3R | 10999859..11000065 | 498..704 | 100 | <- | Minus |
| arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
| arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
| arm_3R | 11004761..11004861 | 7..107 | 96 | | Minus |
BO07641.complete Sequence
970 bp (970 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630872
> BO07641.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAG
CCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGT
GGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCC
TCGAGCCCCGTGGCCCGGGATTCGTACTTGTCGCCGGTGAAGAACCGCTA
CTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTCACCGCTCAATTT
TGGCAAGCTTTCTAGACCAT
BO07641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RD | 939 | CG6803-PD | 1..936 | 17..952 | 4680 | 100 | Plus |
| Mf-RJ | 942 | CG6803-PJ | 1..921 | 17..937 | 4605 | 100 | Plus |
| Mf-RF | 942 | CG6803-PF | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RD | 1783 | CG6803-RD | 115..1050 | 17..952 | 4680 | 100 | Plus |
| Mf-RJ | 1954 | CG6803-RJ | 115..1035 | 17..937 | 4605 | 100 | Plus |
| Mf-RF | 2020 | CG6803-RF | 181..1101 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15172600..15172830 | 935..705 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15174136..15174344 | 705..497 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:59:05 has no hits.
BO07641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:20 Download gff for
BO07641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 1..939 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:07 Download gff for
BO07641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..1053 | 7..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:22 Download gff for
BO07641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 120..1050 | 22..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:20 Download gff for
BO07641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 105..1053 | 7..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:51 Download gff for
BO07641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 120..1050 | 22..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:51 Download gff for
BO07641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
| 3R | 15179039..15179124 | 22..107 | 100 | | Minus |
| 3R | 15172600..15172830 | 705..935 | 100 | <- | Minus |
| 3R | 15174137..15174343 | 498..704 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:22 Download gff for
BO07641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
| arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
| arm_3R | 10998322..10998552 | 705..935 | 100 | <- | Minus |
| arm_3R | 10999859..11000065 | 498..704 | 100 | <- | Minus |
| arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
BO07641.pep Sequence
Translation from 16 to 970
> BO07641.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERLPIFHPRNRFRDLLSPSPNL
PISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWSKH
PARPLTPHRSILASFLDH
BO07641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-PD | 312 | CG6803-PD | 1..312 | 1..312 | 1672 | 100 | Plus |
| Mf-PJ | 313 | CG6803-PJ | 1..312 | 1..312 | 1648 | 98.7 | Plus |
| Mf-PF | 313 | CG6803-PF | 1..312 | 1..312 | 1648 | 98.7 | Plus |
| Mf-PO | 310 | CG6803-PO | 1..310 | 1..312 | 1644 | 99 | Plus |
| Mf-PM | 364 | CG6803-PM | 1..364 | 1..312 | 1609 | 85.7 | Plus |
