Clone Sequence Records
BO07645.3prime Sequence
937 bp (777 high quality bases) assembled on 2006-01-06
> BO07645.3prime
ATGGTCTAGAAAGCTTGCCTCTGTTTCCGTTTCATTCTTCACAATCAGTC
GTTGCTTTTTTACAAAATGCTCTATCCGGTTCTCCAAACTCTCACATCGT
TTGCGTTCTAAAAGAGGCTGATATTGACGCGGATTGACGGAATCTTGCAA
CAGGATTACCTGAGCCAGTACCTTCTCTTTTGGCTTAAAATTCTCTTCAA
ATAAGTTTTCCAATTGTTGCAGCACATTGCGTATCATGGTGCTCTTAACG
CTAAATTGCGTCCACTCACACTGGGTGTTTTCAATAAGCTTTTGTAGATT
TTCCTCATTGTAAATCCACGCTGTAAGATCACGCTCCAAGTGCTCCGGAG
CATTTAAGTCATTTGATTCGTCGGCGGCTGTATCCATGGCTTCTTCGTCT
GCATCACCGCTGCTTGGATGGTTTACACTTCTTGTTGTGTGGTCTCGAAA
GTCGCAACGAAACAGATTTAAGGGCAATCCAATTGCGGGGGTGTACTGAG
GCTTGCAGGGATTAGACTCCACATCAAGCAGGTCACTTATTACGCCCGGG
TTTTCCTTTTTTTGGCCAACAAGTAAAAGCACCGCCATTATGCAACGGAT
TTGGTGCCAAAGGAAGGCATTTGCTTGAATCTCCAGGTAGTACATGTCGT
AGCCTGAATTTGTATGATTTGTCTGATCACAAGCTTCCACCCTGGCAGAT
TGCAAGTTTCTCATGTAGTTGGTTACTCCGTTGTGCACGTCCATTTTGCA
GAAATTACGGAAGTCGGCGTGACGCACTAGGAGATCACAGGCTTTACGCA
TGGCAGCAATGTCCAGGTCACCCTTAGGAAAGTAGTAACGATAGGTGCGG
GAAACGCAATCAAATCGAGCGCTATAAACCGGACTGCGCAGTGGCATCCA
AGCCACGCACTGAATGTCTTGGGCAGCACTCGATTCA
BO07645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-PA | 1500 | CG3045-RA | 599..1497 | 917..19 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1663 | CG3045-RA | 670..1589 | 937..19 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22173007..22173570 | 93..656 | 2820 | 100 | Plus |
2R | 25286936 | 2R | 22173625..22173910 | 653..937 | 1380 | 99.7 | Plus |
2R | 25286936 | 2R | 22172877..22172951 | 19..93 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:34:05 has no hits.
BO07645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:01 Download gff for
BO07645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 579..1500 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:44 Download gff for
BO07645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 579..1500 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:23 Download gff for
BO07645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 671..1589 | 19..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:15 Download gff for
BO07645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 671..1589 | 19..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:15 Download gff for
BO07645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22172877..22172950 | 19..92 | 100 | <- | Plus |
2R | 22173007..22173567 | 93..653 | 100 | <- | Plus |
2R | 22173626..22173909 | 654..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:23 Download gff for
BO07645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18061131..18061414 | 654..936 | 99 | | Plus |
arm_2R | 18060382..18060455 | 19..92 | 100 | <- | Plus |
arm_2R | 18060512..18061072 | 93..653 | 100 | <- | Plus |
BO07645.5prime Sequence
958 bp (819 high quality bases) assembled on 2006-01-06
> BO07645.5prime
GAAGTTATCAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAA
ATAAACGATTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAA
ACCGAGCTGATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTT
GCGGAATCTGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGG
AATACTCTGGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTG
GCCAAGACATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAG
TGCACACAAGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATT
ATCAAGGATTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAAC
TTGTTCCGCGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTC
CAATTATCACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCC
AGGTTATCTCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTG
GATCCCACAGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCG
AGTGCTGCCCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTC
CGGTTTATAGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTAC
TTTCCTAAGGGTGACCTGGACATTGCTGCCATGCGTAAAGCCTGTGATCT
CCTAGTGCGTCACGCCGACTTCCGTAATTTCTGCAAAATGGACGTGCACA
ACGGAGTAACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCT
TGTGATCAGACAAATCATACAAATTCAGGCTACGACATGTACTACCTGGA
GATTCAAGCAAATGCCTTCCTTTGGCACAAATCCCGTGCATAATGGCGGT
GCTTTTTA
BO07645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-PA | 1500 | CG3045-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1663 | CG3045-RA | 93..1033 | 17..956 | 4650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22173625..22174112 | 879..392 | 2440 | 100 | Minus |
2R | 25286936 | 2R | 22174316..22174599 | 300..17 | 1420 | 100 | Minus |
2R | 25286936 | 2R | 22174168..22174262 | 392..298 | 475 | 100 | Minus |
2R | 25286936 | 2R | 22173489..22173570 | 956..876 | 330 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:10:17 has no hits.
BO07645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:02 Download gff for
BO07645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:45 Download gff for
BO07645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:27 Download gff for
BO07645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..1033 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:19 Download gff for
BO07645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..1033 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:19 Download gff for
BO07645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22174168..22174259 | 301..392 | 100 | <- | Minus |
2R | 22174316..22174599 | 17..300 | 100 | | Minus |
2R | 22173488..22173567 | 879..957 | 95 | <- | Minus |
2R | 22173626..22174111 | 393..878 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:27 Download gff for
BO07645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18060993..18061072 | 879..957 | 95 | <- | Minus |
arm_2R | 18061131..18061616 | 393..878 | 100 | <- | Minus |
arm_2R | 18061673..18061764 | 301..392 | 100 | <- | Minus |
arm_2R | 18061821..18062104 | 17..300 | 100 | | Minus |
BO07645.complete Sequence
1531 bp (1531 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630873
> BO07645.complete
GAAGTTATCAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAA
ATAAACGATTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAA
ACCGAGCTGATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTT
GCGGAATCTGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGG
AATACTCTGGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTG
GCCAAGACATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAG
TGCACACAAGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATT
ATCAAGGATTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAAC
TTGTTCCGCGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTC
CAATTATCACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCC
AGGTTATCTCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTG
GATCCCACAGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCG
AGTGCTGCCCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTC
CGGTTTATAGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTAC
TTTCCTAAGGGTGACCTGGACATTGCTGCCATGCGTAAAGCCTGTGATCT
CCTAGTGCGTCACGCCGACTTCCGTAATTTCTGCAAAATGGACGTGCACA
ACGGAGTAACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCT
TGTGATCAGACAAATCATACAAATTCAGGCTACGACATGTACTACCTGGA
GATTCAAGCAAATGCCTTCCTTTGGCACCAAATCCGTTGCATAATGGCGG
TGCTTTTACTTGTTGGCCAAAAAAAGGAAAACCCGGGCGTAATAAGTGAC
CTGCTTGATGTGGAGTCTAATCCCTGCAAGCCTCAGTACACCCCCGCAAT
TGGATTGCCCTTAAATCTGTTTCGTTGCGACTTTCGAGACCACACAACAA
GAAGTGTAAACCATCCAAGCAGCGGTGATGCAGACGAAGAAGCCATGGAT
ACAGCCGCCGACGAATCAAATGACTTAAATGCTCCGGAGCACTTGGAGCG
TGATCTTACAGCGTGGATTTACAATGAGGAAAATCTACAAAAGCTTATTG
AAAACACCCAGTGTGAGTGGACGCAATTTAGCGTTAAGAGCACCATGATA
CGCAATGTGCTGCAACAATTGGAAAACTTATTTGAAGAGAATTTTAAGCC
AAAAGAGAAGGTACTGGCTCAGGTAATCCTGTTGCAAGATTCCGTCAATC
CGCGTCAATATCAGCCTCTTTTAGAACGCAAACGATGTGAGAGTTTGGAG
AACCGGATAGAGCATTTTGTAAAAAAGCAACGACTGATTGTGAAGAATGA
AACGGAAACAGAGGCAAGCTTTCTAGACCAT
BO07645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1500 | CG3045-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1663 | CG3045-RA | 93..1589 | 17..1513 | 7485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22173007..22173570 | 1439..876 | 2820 | 100 | Minus |
2R | 25286936 | 2R | 22173625..22174112 | 879..392 | 2440 | 100 | Minus |
2R | 25286936 | 2R | 22174316..22174599 | 300..17 | 1420 | 100 | Minus |
2R | 25286936 | 2R | 22174168..22174262 | 392..298 | 475 | 100 | Minus |
2R | 25286936 | 2R | 22172877..22172951 | 1513..1439 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:37:23 has no hits.
BO07645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:13 Download gff for
BO07645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 1..1500 | 17..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:55 Download gff for
BO07645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 140..1636 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:41 Download gff for
BO07645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..1589 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:13 Download gff for
BO07645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 140..1636 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:45 Download gff for
BO07645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..1589 | 17..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:45 Download gff for
BO07645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22174316..22174599 | 17..300 | 100 | | Minus |
2R | 22172874..22172950 | 1440..1515 | 97 | <- | Minus |
2R | 22173007..22173567 | 879..1439 | 100 | <- | Minus |
2R | 22173626..22174111 | 393..878 | 100 | <- | Minus |
2R | 22174168..22174259 | 301..392 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:41 Download gff for
BO07645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18060379..18060455 | 1440..1515 | 97 | <- | Minus |
arm_2R | 18060512..18061072 | 879..1439 | 100 | <- | Minus |
arm_2R | 18061131..18061616 | 393..878 | 100 | <- | Minus |
arm_2R | 18061673..18061764 | 301..392 | 100 | <- | Minus |
arm_2R | 18061821..18062104 | 17..300 | 100 | | Minus |
BO07645.pep Sequence
Translation from 16 to 1531
> BO07645.pep
MSATNDKKVVINKRLKGLSREALEKLTQTELIDKVIQLEAYNFQLRNLLQ
KKLSEKDKHDKEYSGLIGNEAEGKVSQVAKTSSKVQKIRKFDWSSAHKRH
VLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYHRC
GRTDKEVSAFCQVISIDLRSKHPPESQLDPTALSSEIDYCGLLNRVLPKN
IQCVAWMPLRSPVYSARFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHA
DFRNFCKMDVHNGVTNYMRNLQSARVEACDQTNHTNSGYDMYYLEIQANA
FLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESNPCKPQYTPAIGLPLN
LFRCDFRDHTTRSVNHPSSGDADEEAMDTAADESNDLNAPEHLERDLTAW
IYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQQLENLFEENFKPKEKVL
AQVILLQDSVNPRQYQPLLERKRCESLENRIEHFVKKQRLIVKNETETEA
SFLDH
BO07645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-PA | 499 | CG3045-PA | 1..499 | 1..499 | 2623 | 100 | Plus |