Clone Sequence Records
BO07651.3prime Sequence
907 bp (776 high quality bases) assembled on 2006-01-06
> BO07651.3prime
ATGGTCTAGAAAGCTTGCGTGATTTTTCAAATCGAATATTTCACGCAGCA
AGGGCTCCACCTGGGATGGGTTAACATTCAAATAGACATTAATTATGAAC
TTGTTCAGACGCTCCACATCTGAAATCTTTTGGATTAGCTTGATAAACGC
GTTTCTCGCCTCACAGCCAGAATAAACACTCTCCAGATATCTTCGCAGAA
GATAATAGTAGGAATTCTGTTCCAATCTAATCACGTCTTTGTGTATCACT
CGCGATCGAGCCGAGGTAAAAAGGACAATGGCACACATGATCAGGATTAT
GTTCTCGTCCATGCGCCACTTCTCGTCAAACGTTGTGATGAACTTTTGGT
GCTCCTCGTAGATATTGCCTTCGGCAAACTTGAGCAGGTCAGTGCGTATG
TTGCCCATGTTCTCTTTGGTATGGGGTACCTTCCAGGCGGCGCGATCGTC
GTCGTAAATCATTACGGAGCGCATTATCATCATTTCTGTGCAGCCACCTT
TGAGTAGGGCCACCTGGTCCTCCTGGCACATGTCACGGAATGCTGTAATC
TTCTTGGCCATTTTGATAAGCCGCTTGATGGCCACCGCCGTCAGATTGAT
CAGCTGCAATAGCTTTGGGTTGTGGCGAGTGTCGTCGGGCTTAATGCGAT
CATCGCCCATCATCAGGGCGCTGAGGTCCTCGTCCACGGGATCATAAAGA
GCCTCGCTGGCCAGTCGCAGCTCCCGCAGCTTCATTTGCTCCGCCTCGTT
TAGCTCGCGATCCAACTGCTGGGTGGATGGGGCGCAGATGGGTTGCTGCA
GGTGCGGCTGGCTATTGTTTGCAGCCGAATTGCATCCACCGTACGTAGAC
TGAGTGCCGTAGGACATCTCCTCCTTTACGCGCGATGCCGCTTGTTGTAT
GCTATTG
BO07651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11783-PA | 2172 | Hr96-RA | 1281..2169 | 907..19 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2834 | CG11783-RA | 1590..2478 | 907..19 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25026957..25027224 | 907..640 | 1340 | 100 | Minus |
3R | 32079331 | 3R | 25028246..25028461 | 641..426 | 1080 | 100 | Minus |
3R | 32079331 | 3R | 25028527..25028741 | 431..217 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 25028796..25028995 | 218..19 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:54:23 has no hits.
BO07651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:13 Download gff for
BO07651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-PA | 1281..2172 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:58 Download gff for
BO07651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11783-PA | 1281..2172 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:45 Download gff for
BO07651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 1590..2478 | 19..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:00 Download gff for
BO07651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 1590..2478 | 19..907 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:00 Download gff for
BO07651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25026957..25027224 | 640..907 | 100 | -> | Minus |
3R | 25028248..25028457 | 430..639 | 100 | -> | Minus |
3R | 25028529..25028741 | 217..429 | 100 | -> | Minus |
3R | 25028798..25028994 | 20..216 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:45 Download gff for
BO07651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20852679..20852946 | 640..907 | 100 | -> | Minus |
arm_3R | 20853970..20854179 | 430..639 | 100 | -> | Minus |
arm_3R | 20854251..20854463 | 217..429 | 100 | -> | Minus |
arm_3R | 20854520..20854716 | 20..216 | 100 | -> | Minus |
BO07651.5prime Sequence
788 bp (776 high quality bases) assembled on 2006-01-06
> BO07651.5prime
GAAGTTATCAGTCGACATGTCGCCGCCGAAGAACTGCGCGGTGTGCGGGG
ACAAGGCTCTGGGCTACAACTTCAATGCGGTCACCTGCGAGAGCTGCAAG
GCGTTCTTCCGACGGAACGCGCTGGCCAAGAAGCAGTTCACCTGCCCCTT
CAACCAAAACTGCGACATCACTGTGGTCACTCGACGCTTCTGCCAGAAAT
GCCGCCTGCGCAAGTGCCTGGATATCGGGATGAAGAGTGAAAACATTATG
TCCGAGGAGGACAAGCTGATCAAGCGGCGCAAGATCGAGACCAACCGGGC
CAAGCGACGCCTCATGGAGAACGGCACGGATGCGTGCGACGCCGATGGCG
GCGAGGAAAGGGATCACAAAGCGCCGGCGGATAGCAGCAGCAGCAACCTT
GACCACTACTCGGGGTCACAGGACTCGCAGAGCTGCGGCTCGGCGGACAG
CGGGGCCAATGGGTGCTCCGGCAGACAGGCCAGTTCGCCGGGCACACAGG
TCAATCCGCTTCAGATGACGGCCGAGAAGATAGTCGACCAGATCGTATCC
GACCCGGATCGAGCCTCGCAGGCCATCAACCGGTTGATGCGCACGCAGAA
AGAGGCTATATCGGTGATGGAGAAGGTAATCAGCTCACAAAAGGACGCCT
TAAGGCTGGTGTCGCATTTGATCGACTATCCAGGCGACGCACTCAAGATC
ATTTCAAAGTTTATGAACTCGCCCTTTAACGCGCTGACAGTATTCACCAA
ATTCATGAGCTCACCCACGGACGGCGTTGAAATTATCT
BO07651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11783-PA | 2172 | Hr96-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2834 | CG11783-RA | 304..1081 | 11..788 | 3875 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25025538..25026211 | 11..684 | 3355 | 99.9 | Plus |
3R | 32079331 | 3R | 25026276..25026335 | 681..740 | 300 | 100 | Plus |
3R | 32079331 | 3R | 25026398..25026448 | 738..788 | 255 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey | 5020 | jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). | 3180..3226 | 628..674 | 109 | 70.2 | Plus |
BO07651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:14 Download gff for
BO07651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:00 Download gff for
BO07651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11783-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:33 Download gff for
BO07651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 304..1081 | 11..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:33 Download gff for
BO07651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 304..1081 | 11..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:33 Download gff for
BO07651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25025538..25026210 | 11..683 | 99 | -> | Plus |
3R | 25026279..25026335 | 684..740 | 100 | -> | Plus |
3R | 25026401..25026448 | 741..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:33 Download gff for
BO07651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20851260..20851932 | 11..683 | 99 | -> | Plus |
arm_3R | 20852001..20852057 | 684..740 | 100 | -> | Plus |
arm_3R | 20852123..20852170 | 741..788 | 100 | | Plus |
BO07651.complete Sequence
2203 bp (2203 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630875
> BO07651.complete
GAAGTTATCAGTCGACATGTCGCCGCCGAAGAACTGCGCGGTGTGCGGGG
ACAAGGCTCTGGGCTACAACTTCAATGCGGTCACCTGCGAGAGCTGCAAG
GCGTTCTTCCGACGGAACGCGCTGGCCAAGAAGCAGTTCACCTGCCCCTT
CAACCAAAACTGCGACATCACTGTGGTCACTCGACGCTTCTGCCAGAAAT
GCCGCCTGCGCAAGTGCCTGGATATCGGGATGAAGAGTGAAAACATTATG
TCCGAGGAGGACAAGCTGATCAAGCGGCGCAAGATCGAGACCAACCGGGC
CAAGCGACGCCTCATGGAGAACGGCACGGATGCGTGCGACGCCGATGGCG
GCGAGGAAAGGGATCACAAAGCGCCGGCGGATAGCAGCAGCAGCAACCTT
GACCACTACTCGGGGTCACAGGACTCGCAGAGCTGCGGCTCGGCGGACAG
CGGGGCCAATGGGTGCTCCGGCAGACAGGCCAGTTCGCCGGGCACACAGG
TCAATCCGCTTCAGATGACGGCCGAGAAGATAGTCGACCAGATCGTATCC
GACCCGGATCGAGCCTCGCAGGCCATCAACCGGTTGATGCGCACGCAGAA
AGAGGCTATATCGGTGATGGAGAAGGTAATCAGCTCACAAAAGGACGCCT
TAAGGCTGGTGTCGCATTTGATCGACTATCCAGGCGACGCACTCAAGATC
ATTTCAAAGTTTATGAACTCGCCCTTTAACGCGCTGACAGTATTCACCAA
ATTCATGAGCTCACCCACGGACGGCGTTGAAATTATCTCAAAGATAGTTG
ATTCGCCCGCGGACGTGGTGGAGTTCATGCAGAACTTGATGCACTCGCCA
GAGGACGCCATCGATATAATGAACAAGTTCATGAATACCCCAGCGGAGGC
GCTGCGCATTCTTAACCGAATCCTAAGCGGCGGAGGAGCGAACGCAGCCC
AGCAGACAGCAGACCGCAAGCCATTGCTGGACAAGGAGCCGGCGGTGAAG
CCTGCAGCGCCAGCGGAGCGAGCTGATACTGTCATTCAAAGCATGCTGGG
CAACAGTCCGCCAATTTCGCCACATGATGCTGCCGTGGATCTGCAGTACC
ACTCGCCCGGTGTCGGGGAGCAGCCCAGTACATCGAGTAGCCACCCCTTG
CCTTACATAGCCAACTCGCCGGACTTCGATCTGAAGACCTTCATGCAGAC
CAACTACAACGACGAGCCCAGTCTGGACAGTGATTTTAGCATTAACTCAA
TCGAATCGGTGCTATCCGAGGTGATCCGCATTGAGTACCAGGCCTTCAAT
AGCATACAACAAGCGGCATCGCGCGTAAAGGAGGAGATGTCCTACGGCAC
TCAGTCTACGTACGGTGGATGCAATTCGGCTGCAAACAATAGCCAGCCGC
ACCTGCAGCAACCCATCTGCGCCCCATCCACCCAGCAGTTGGATCGCGAG
CTAAACGAGGCGGAGCAAATGAAGCTGCGGGAGCTGCGACTGGCCAGCGA
GGCTCTTTATGATCCCGTGGACGAGGACCTCAGCGCCCTGATGATGGGCG
ATGATCGCATTAAGCCCGACGACACTCGCCACAACCCAAAGCTATTGCAG
CTGATCAATCTGACGGCGGTGGCCATCAAGCGGCTTATCAAAATGGCCAA
GAAGATTACAGCATTCCGTGACATGTGCCAGGAGGACCAGGTGGCCCTAC
TCAAAGGTGGCTGCACAGAAATGATGATAATGCGCTCCGTAATGATTTAC
GACGACGATCGCGCCGCCTGGAAGGTACCCCATACCAAAGAGAACATGGG
CAACATACGCACTGACCTGCTCAAGTTTGCCGAAGGCAATATCTACGAGG
AGCACCAAAAGTTCATCACAACGTTTGACGAGAAGTGGCGCATGGACGAG
AACATAATCCTGATCATGTGTGCCATTGTCCTTTTTACCTCGGCTCGATC
GCGAGTGATACACAAAGACGTGATTAGATTGGAACAGAATTCCTACTATT
ATCTTCTGCGAAGATATCTGGAGAGTGTTTATTCTGGCTGTGAGGCGAGA
AACGCGTTTATCAAGCTAATCCAAAAGATTTCAGATGTGGAGCGTCTGAA
CAAGTTCATAATTAATGTCTATTTGAATGTTAACCCATCCCAGGTGGAGC
CCTTGCTGCGTGAAATATTCGATTTGAAAAATCACGCAAGCTTTCTAGAC
CAT
BO07651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2172 | CG11783-PA | 1..2169 | 17..2185 | 10845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2834 | CG11783-RA | 304..2478 | 11..2185 | 10860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25026398..25027224 | 738..1564 | 4135 | 100 | Plus |
3R | 32079331 | 3R | 25025538..25026211 | 11..684 | 3355 | 99.9 | Plus |
3R | 32079331 | 3R | 25028246..25028461 | 1563..1778 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 25028527..25028741 | 1773..1987 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 25028796..25028995 | 1986..2185 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 25026276..25026335 | 681..740 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:13:34 has no hits.
BO07651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:35 Download gff for
BO07651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 1..2172 | 17..2186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:24 Download gff for
BO07651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 300..2474 | 11..2185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:55 Download gff for
BO07651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 310..2478 | 17..2187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:35 Download gff for
BO07651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 300..2474 | 11..2185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:00 Download gff for
BO07651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 310..2478 | 17..2187 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:00 Download gff for
BO07651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25028529..25028741 | 1775..1987 | 100 | -> | Plus |
3R | 25025544..25026210 | 17..683 | 100 | -> | Plus |
3R | 25026279..25026335 | 684..740 | 100 | -> | Plus |
3R | 25026401..25027224 | 741..1564 | 100 | -> | Plus |
3R | 25028248..25028457 | 1565..1774 | 100 | -> | Plus |
3R | 25028798..25028995 | 1988..2187 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:55 Download gff for
BO07651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20852001..20852057 | 684..740 | 100 | -> | Plus |
arm_3R | 20851266..20851932 | 17..683 | 100 | -> | Plus |
arm_3R | 20852123..20852946 | 741..1564 | 100 | -> | Plus |
arm_3R | 20853970..20854179 | 1565..1774 | 100 | -> | Plus |
arm_3R | 20854251..20854463 | 1775..1987 | 100 | -> | Plus |
arm_3R | 20854520..20854717 | 1988..2187 | 99 | | Plus |
BO07651.pep Sequence
Translation from 16 to 2203
> BO07651.pep
MSPPKNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCD
ITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLM
ENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQDSQSCGSADSGANGC
SGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAISV
MEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSP
TDGVEIISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILN
RILSGGGANAAQQTADRKPLLDKEPAVKPAAPAERADTVIQSMLGNSPPI
SPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTFMQTNYNDE
PSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYG
GCNSAANNSQPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDP
VDEDLSALMMGDDRIKPDDTRHNPKLLQLINLTAVAIKRLIKMAKKITAF
RDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAWKVPHTKENMGNIRTD
LLKFAEGNIYEEHQKFITTFDEKWRMDENIILIMCAIVLFTSARSRVIHK
DVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIIN
VYLNVNPSQVEPLLREIFDLKNHASFLDH
BO07651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-PA | 723 | CG11783-PA | 1..723 | 1..723 | 3728 | 100 | Plus |
EcR-PC | 669 | CG1765-PC | 55..165 | 7..112 | 245 | 39.6 | Plus |
EcR-PE | 849 | CG1765-PE | 235..345 | 7..112 | 245 | 39.6 | Plus |
EcR-PD | 849 | CG1765-PD | 235..345 | 7..112 | 245 | 39.6 | Plus |
EcR-PA | 849 | CG1765-PA | 235..345 | 7..112 | 245 | 39.6 | Plus |