Clone BO07652 Report

Search the DGRC for BO07652

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptSpn5-RA
Protein status:BO07652.pep: validated full length
Sequenced Size:1315

Clone Sequence Records

BO07652.3prime Sequence

906 bp (873 high quality bases) assembled on 2006-01-06

> BO07652.3prime
ATGGTCTAGAAAGCTTGCCTGCTTTATTGTTTTGGGATCGCGATAGATGC
CCGTAAATAGGATCGACCTGGAAGTGCGGTCGTAGATGACGAACAGGAAC
GGATGGTTGCACTCAAACTTGGCCGGCTCCACGGGCCTGGCCGAGCGGTA
GGTGAAGAGGACTGTGGCCGCCGCCGCAGTGCTACCCTCCTCGTCCACCT
TGATCTTGGCCACGTGCTTGGAGTCACCGATGGAAATCGTCTCGGAGGTC
AGATCATCGAAGGTAGCGACAGACTCATCGAACATTTTGCTAACTCCCAT
TTTGGCAAGGATAGGATTAAGTTCCAGGCGCTGTTCAAACTCAAACTTGG
GCAGCGAAACTTCGATTTCGCGGGGCATTGCCTGCTTCAACGAATCATCC
AGACTGTCGGCATTCAACCGGGAGAGCACATCTTCGAGGGAATTACTGTT
AAATGGCGGCAAGATGAGCACCATGGAGATGTCCGAGTTCTCATCCGGCG
AGCTGTCCTCCTTCTCCTGAGACTCAAAGACGGTGCGATAGGGCAGCTGA
AGCACGTGGGCGCGGAGCTGTTCGTCGACATTCAGTAAGAAGGTGCCCTT
CTGTTGCATCATGGACACGAGAGAGTAGTTCGACGGAGACGTGTAGAAGG
GCATGGGCACCGTCTTCTCCGTCTTGAACTGACTGAGCCACTGACCCTTC
AGATAGGCGGCGTTGGCCAGGACCAAACGAGTGCGCGGAGTGATTTCATC
GGCACTGAGCATATTGCGGATTTGATCGTGCGTCTGCTTGGCAATCCAAT
CGTTGATTTGCTTGCGCGACTCCTCCGTCTGGCTCTTGAAGTCGATCTGC
TGCACCTCCTCGGGCAGACGATTCCTTGCGCATTCGGTCACATGCAGATC
ATTGGC

BO07652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18525-PA 1284 Spn5-RA 394..1281 906..19 4415 99.8 Minus
CG18525-PB 1284 Spn5-RB 394..1281 906..19 4415 99.8 Minus
CG6687-PA 1281 CG6687-RA 568..621 726..673 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1518 CG18525-RB 504..1391 906..19 4425 99.9 Minus
Spn88Ea-RA 1521 CG18525-RA 507..1394 906..19 4425 99.9 Minus
Spn88Eb-RA 1431 CG6687-RA 572..723 813..662 295 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15203550..15204143 313..906 2955 99.8 Plus
3R 32079331 3R 15203196..15203489 19..312 1470 100 Plus
3R 32079331 3R 15207473..15207624 662..813 295 79.6 Plus
3R 32079331 3R 15206901..15206978 155..232 195 83.3 Plus
Blast to na_te.dros performed on 2015-02-12 23:39:33 has no hits.

BO07652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:15 Download gff for BO07652.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn5-PB 394..1284 15..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:01 Download gff for BO07652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18525-PB 394..1284 15..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:26 Download gff for BO07652.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 507..1397 15..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:30 Download gff for BO07652.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 507..1397 15..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:30 Download gff for BO07652.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15203192..15203489 15..312 99 <- Plus
3R 15203550..15204143 313..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:26 Download gff for BO07652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11028914..11029211 15..312 99 <- Plus
arm_3R 11029272..11029865 313..906 99   Plus

BO07652.5prime Sequence

925 bp (796 high quality bases) assembled on 2006-01-06

> BO07652.5prime
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCANG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTCTCCCGGTT
GAATGCCGACAGTCTGGATGATTCG

BO07652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18525-PA 1284 Spn5-RA 1..909 17..925 4526 99.8 Plus
CG18525-PB 1284 Spn5-RB 1..909 17..925 4526 99.8 Plus
CG6687-PA 1281 CG6687-RA 568..621 590..643 145 90.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1518 CG18525-RB 110..1019 16..925 4539 99.9 Plus
Spn88Ea-RA 1521 CG18525-RA 113..1022 16..925 4539 99.9 Plus
Spn88Eb-RA 1431 CG6687-RA 572..723 503..654 295 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15203628..15204537 925..16 4539 99.9 Minus
3R 32079331 3R 15207473..15207624 654..503 295 79.6 Minus
Blast to na_te.dros performed on 2015-02-12 00:11:50 has no hits.

BO07652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:16 Download gff for BO07652.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn5-PB 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:02 Download gff for BO07652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18525-PB 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:36 Download gff for BO07652.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 108..1022 9..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:39 Download gff for BO07652.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 108..1022 9..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:39 Download gff for BO07652.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15203628..15204540 9..925 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:36 Download gff for BO07652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11029350..11030262 9..925 99   Minus

BO07652.complete Sequence

1315 bp (1315 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630876

> BO07652.complete
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCAGG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTCTCCCGGTT
GAATGCCGACAGTCTGGATGATTCGTTGAAGCAGGCAATGCCCCGCGAAA
TCGAAGTTTCGCTGCCCAAGTTTGAGTTTGAACAGCGCCTGGAACTTAAT
CCTATCCTTGCCAAAATGGGAGTTAGCAAAATGTTCGATGAGTCTGTCGC
TACCTTCGATGATCTGACCTCCGAGACGATTTCCATCGGTGACTCCAAGC
ACGTGGCCAAGATCAAGGTGGACGAGGAGGGTAGCACTGCGGCGGCGGCC
ACAGTCCTCTTCACCTACCGCTCGGCCAGGCCCGTGGAGCCGGCCAAGTT
TGAGTGCAACCATCCGTTCCTGTTCGTCATCTACGACCGCACTTCCAGGT
CGATCCTATTTACGGGCATCTATCGCGATCCCAAAACAATAAAGCAGGCA
AGCTTTCTAGACCAT

BO07652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1284 CG18525-PB 1..1281 17..1297 6405 100 Plus
Spn88Ea-RA 1284 CG18525-PA 1..1281 17..1297 6405 100 Plus
Spn88Eb-RA 1281 CG6687-PA 481..632 503..654 295 79.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-RB 1518 CG18525-RB 110..1391 16..1297 6410 100 Plus
Spn88Ea-RA 1521 CG18525-RA 113..1394 16..1297 6410 100 Plus
Spn88Eb-RA 1431 CG6687-RA 572..723 503..654 295 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15203550..15204537 1003..16 4940 100 Minus
3R 32079331 3R 15203196..15203489 1297..1004 1470 100 Minus
3R 32079331 3R 15207473..15207624 654..503 295 79.6 Minus
3R 32079331 3R 15206901..15206978 1161..1084 195 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 23:48:46 has no hits.

BO07652.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:22 Download gff for BO07652.complete
Subject Subject Range Query Range Percent Splice Strand
Spn5-RB 1..1284 17..1301 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:09 Download gff for BO07652.complete
Subject Subject Range Query Range Percent Splice Strand
Spn5-RB 83..1372 9..1301 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:42 Download gff for BO07652.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 114..1394 17..1299 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:22 Download gff for BO07652.complete
Subject Subject Range Query Range Percent Splice Strand
Spn5-RB 83..1372 9..1301 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:50 Download gff for BO07652.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Ea-RA 114..1394 17..1299 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:50 Download gff for BO07652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15203194..15203489 1004..1299 99 <- Minus
3R 15203550..15204536 17..1003 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:42 Download gff for BO07652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11028916..11029211 1004..1299 99 <- Minus
arm_3R 11029272..11030258 17..1003 100   Minus

BO07652.pep Sequence

Translation from 16 to 1315

> BO07652.pep
MHILSISLMAVLPAIALAGLCGVEPDAGLLDQRLNLYKGQQNFAVSMLNV
IRQSTPNENVFFSPYSTYHALLLAYFGSSGDTEKELAKVLHLDWADSKEV
VRSAYILEKMNRKERQSKMPLEFSSADRIFFANDLHVTECARNRLAEEVQ
QIDFKSQTEESRKQINDWIAKQTHDQIRNMLSADEITPRTRLVLANAAYL
KGQWLSQFKTEKTVPMPFYTSPSNYSLVSMMQQKGTFLLNVDEQLRAHVL
QLPYRTVFESQEKEDSSPDENSDISMVLILPPFNSNSLEDVLSRLNADSL
DDSLKQAMPREIEVSLPKFEFEQRLELNPILAKMGVSKMFDESVATFDDL
TSETISIGDSKHVAKIKVDEEGSTAAAATVLFTYRSARPVEPAKFECNHP
FLFVIYDRTSRSILFTGIYRDPKTIKQASFLDH

BO07652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Ea-PB 427 CG18525-PB 1..427 1..427 2165 100 Plus
Spn88Ea-PA 427 CG18525-PA 1..427 1..427 2165 100 Plus
Spn88Eb-PA 426 CG6687-PA 1..425 1..426 1079 49.5 Plus
Spn55B-PA 374 CG10913-PA 1..370 29..419 403 29.1 Plus
Spn43Aa-PA 390 CG12172-PA 22..385 35..417 381 30.1 Plus