Clone Sequence Records
BO07652.3prime Sequence
906 bp (873 high quality bases) assembled on 2006-01-06
> BO07652.3prime
ATGGTCTAGAAAGCTTGCCTGCTTTATTGTTTTGGGATCGCGATAGATGC
CCGTAAATAGGATCGACCTGGAAGTGCGGTCGTAGATGACGAACAGGAAC
GGATGGTTGCACTCAAACTTGGCCGGCTCCACGGGCCTGGCCGAGCGGTA
GGTGAAGAGGACTGTGGCCGCCGCCGCAGTGCTACCCTCCTCGTCCACCT
TGATCTTGGCCACGTGCTTGGAGTCACCGATGGAAATCGTCTCGGAGGTC
AGATCATCGAAGGTAGCGACAGACTCATCGAACATTTTGCTAACTCCCAT
TTTGGCAAGGATAGGATTAAGTTCCAGGCGCTGTTCAAACTCAAACTTGG
GCAGCGAAACTTCGATTTCGCGGGGCATTGCCTGCTTCAACGAATCATCC
AGACTGTCGGCATTCAACCGGGAGAGCACATCTTCGAGGGAATTACTGTT
AAATGGCGGCAAGATGAGCACCATGGAGATGTCCGAGTTCTCATCCGGCG
AGCTGTCCTCCTTCTCCTGAGACTCAAAGACGGTGCGATAGGGCAGCTGA
AGCACGTGGGCGCGGAGCTGTTCGTCGACATTCAGTAAGAAGGTGCCCTT
CTGTTGCATCATGGACACGAGAGAGTAGTTCGACGGAGACGTGTAGAAGG
GCATGGGCACCGTCTTCTCCGTCTTGAACTGACTGAGCCACTGACCCTTC
AGATAGGCGGCGTTGGCCAGGACCAAACGAGTGCGCGGAGTGATTTCATC
GGCACTGAGCATATTGCGGATTTGATCGTGCGTCTGCTTGGCAATCCAAT
CGTTGATTTGCTTGCGCGACTCCTCCGTCTGGCTCTTGAAGTCGATCTGC
TGCACCTCCTCGGGCAGACGATTCCTTGCGCATTCGGTCACATGCAGATC
ATTGGC
BO07652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18525-PA | 1284 | Spn5-RA | 394..1281 | 906..19 | 4415 | 99.8 | Minus |
CG18525-PB | 1284 | Spn5-RB | 394..1281 | 906..19 | 4415 | 99.8 | Minus |
CG6687-PA | 1281 | CG6687-RA | 568..621 | 726..673 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1518 | CG18525-RB | 504..1391 | 906..19 | 4425 | 99.9 | Minus |
Spn88Ea-RA | 1521 | CG18525-RA | 507..1394 | 906..19 | 4425 | 99.9 | Minus |
Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 813..662 | 295 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15203550..15204143 | 313..906 | 2955 | 99.8 | Plus |
3R | 32079331 | 3R | 15203196..15203489 | 19..312 | 1470 | 100 | Plus |
3R | 32079331 | 3R | 15207473..15207624 | 662..813 | 295 | 79.6 | Plus |
3R | 32079331 | 3R | 15206901..15206978 | 155..232 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:39:33 has no hits.
BO07652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:15 Download gff for
BO07652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-PB | 394..1284 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:01 Download gff for
BO07652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18525-PB | 394..1284 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:26 Download gff for
BO07652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 507..1397 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:30 Download gff for
BO07652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 507..1397 | 15..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:30 Download gff for
BO07652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15203192..15203489 | 15..312 | 99 | <- | Plus |
3R | 15203550..15204143 | 313..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:26 Download gff for
BO07652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11028914..11029211 | 15..312 | 99 | <- | Plus |
arm_3R | 11029272..11029865 | 313..906 | 99 | | Plus |
BO07652.5prime Sequence
925 bp (796 high quality bases) assembled on 2006-01-06
> BO07652.5prime
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCANG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTCTCCCGGTT
GAATGCCGACAGTCTGGATGATTCG
BO07652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18525-PA | 1284 | Spn5-RA | 1..909 | 17..925 | 4526 | 99.8 | Plus |
CG18525-PB | 1284 | Spn5-RB | 1..909 | 17..925 | 4526 | 99.8 | Plus |
CG6687-PA | 1281 | CG6687-RA | 568..621 | 590..643 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1518 | CG18525-RB | 110..1019 | 16..925 | 4539 | 99.9 | Plus |
Spn88Ea-RA | 1521 | CG18525-RA | 113..1022 | 16..925 | 4539 | 99.9 | Plus |
Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 503..654 | 295 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15203628..15204537 | 925..16 | 4539 | 99.9 | Minus |
3R | 32079331 | 3R | 15207473..15207624 | 654..503 | 295 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:11:50 has no hits.
BO07652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:16 Download gff for
BO07652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-PB | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:02 Download gff for
BO07652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18525-PB | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:36 Download gff for
BO07652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 108..1022 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:39 Download gff for
BO07652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 108..1022 | 9..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:39 Download gff for
BO07652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15203628..15204540 | 9..925 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:36 Download gff for
BO07652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11029350..11030262 | 9..925 | 99 | | Minus |
BO07652.complete Sequence
1315 bp (1315 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630876
> BO07652.complete
GAAGTTATCAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCC
TGCCGGCCATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGT
TTGTTGGATCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGT
GTCCATGCTGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCT
TCTCGCCGTACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCC
TCTGGTGACACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGC
CGACTCGAAGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACC
GTAAGGAGCGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGC
ATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCT
GGCCGAGGAGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGC
GCAAGCAAATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGC
AATATGCTCAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGC
CAACGCCGCCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGA
AGACGGTGCCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTG
TCCATGATGCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCT
CCGCGCCCACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCAGG
AGAAGGAGGACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTC
ATCTTGCCGCCATTTAACAGTAATTCCCTCGAAGATGTGCTCTCCCGGTT
GAATGCCGACAGTCTGGATGATTCGTTGAAGCAGGCAATGCCCCGCGAAA
TCGAAGTTTCGCTGCCCAAGTTTGAGTTTGAACAGCGCCTGGAACTTAAT
CCTATCCTTGCCAAAATGGGAGTTAGCAAAATGTTCGATGAGTCTGTCGC
TACCTTCGATGATCTGACCTCCGAGACGATTTCCATCGGTGACTCCAAGC
ACGTGGCCAAGATCAAGGTGGACGAGGAGGGTAGCACTGCGGCGGCGGCC
ACAGTCCTCTTCACCTACCGCTCGGCCAGGCCCGTGGAGCCGGCCAAGTT
TGAGTGCAACCATCCGTTCCTGTTCGTCATCTACGACCGCACTTCCAGGT
CGATCCTATTTACGGGCATCTATCGCGATCCCAAAACAATAAAGCAGGCA
AGCTTTCTAGACCAT
BO07652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1284 | CG18525-PB | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Spn88Ea-RA | 1284 | CG18525-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Spn88Eb-RA | 1281 | CG6687-PA | 481..632 | 503..654 | 295 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-RB | 1518 | CG18525-RB | 110..1391 | 16..1297 | 6410 | 100 | Plus |
Spn88Ea-RA | 1521 | CG18525-RA | 113..1394 | 16..1297 | 6410 | 100 | Plus |
Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 503..654 | 295 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15203550..15204537 | 1003..16 | 4940 | 100 | Minus |
3R | 32079331 | 3R | 15203196..15203489 | 1297..1004 | 1470 | 100 | Minus |
3R | 32079331 | 3R | 15207473..15207624 | 654..503 | 295 | 79.6 | Minus |
3R | 32079331 | 3R | 15206901..15206978 | 1161..1084 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:48:46 has no hits.
BO07652.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:22 Download gff for
BO07652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-RB | 1..1284 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:09 Download gff for
BO07652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-RB | 83..1372 | 9..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:42 Download gff for
BO07652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 114..1394 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:22 Download gff for
BO07652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn5-RB | 83..1372 | 9..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:50 Download gff for
BO07652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Ea-RA | 114..1394 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:50 Download gff for
BO07652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15203194..15203489 | 1004..1299 | 99 | <- | Minus |
3R | 15203550..15204536 | 17..1003 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:42 Download gff for
BO07652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11028916..11029211 | 1004..1299 | 99 | <- | Minus |
arm_3R | 11029272..11030258 | 17..1003 | 100 | | Minus |
BO07652.pep Sequence
Translation from 16 to 1315
> BO07652.pep
MHILSISLMAVLPAIALAGLCGVEPDAGLLDQRLNLYKGQQNFAVSMLNV
IRQSTPNENVFFSPYSTYHALLLAYFGSSGDTEKELAKVLHLDWADSKEV
VRSAYILEKMNRKERQSKMPLEFSSADRIFFANDLHVTECARNRLAEEVQ
QIDFKSQTEESRKQINDWIAKQTHDQIRNMLSADEITPRTRLVLANAAYL
KGQWLSQFKTEKTVPMPFYTSPSNYSLVSMMQQKGTFLLNVDEQLRAHVL
QLPYRTVFESQEKEDSSPDENSDISMVLILPPFNSNSLEDVLSRLNADSL
DDSLKQAMPREIEVSLPKFEFEQRLELNPILAKMGVSKMFDESVATFDDL
TSETISIGDSKHVAKIKVDEEGSTAAAATVLFTYRSARPVEPAKFECNHP
FLFVIYDRTSRSILFTGIYRDPKTIKQASFLDH
BO07652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Ea-PB | 427 | CG18525-PB | 1..427 | 1..427 | 2165 | 100 | Plus |
Spn88Ea-PA | 427 | CG18525-PA | 1..427 | 1..427 | 2165 | 100 | Plus |
Spn88Eb-PA | 426 | CG6687-PA | 1..425 | 1..426 | 1079 | 49.5 | Plus |
Spn55B-PA | 374 | CG10913-PA | 1..370 | 29..419 | 403 | 29.1 | Plus |
Spn43Aa-PA | 390 | CG12172-PA | 22..385 | 35..417 | 381 | 30.1 | Plus |