Clone Sequence Records
BO07656.3prime Sequence
902 bp (800 high quality bases) assembled on 2006-01-06
> BO07656.3prime
ATGGTCTAGAAAGCTTGCTCTTATGTAACCCCGGTTAATGAGCCATGGCA
ATATGACTTTTATCTGATCCACGTAAGCCGGCAACAGGAACATCTTACGC
TTAAACGCGATCGCCTCCTCCGAATTACCCATTACGTTGCCTATATGTGA
ATCAACATCGGGCGGGAGCAGAACAATTGGAAGCATTCGCTGGGCGCATA
TGAAAGCCCAGAGACTATATCGGTGTAGATGGGCGTGGAACTTGGATAGT
GTGGGTGCATTCCGATTGTAATTGAGCATAGTGAGGTGTTCGACTAGCTG
CTGGTGATAATACTCTATGAAATAGTCGAATTTGTCCAGTTTGATTGAAA
ACTTAGGTGAGGTCATCAGTATGCATAGAAGATCTTGGGCGGGTGTGCCA
TATTTTGGGAGCTGGAAGTCAACAAAGCAAACGTCCTCCACTTCTGAGGC
GTTTTTATACTTGAACATAAAGTTATTGCACCAAAAATCTCCGTGGTTTA
ACACAGATAACTCCAGAGGATCGTTCTTACCAAACTCAATATTCAGATCC
GTCAGTTGAGATGTATAGTCGCTTATGAGAACGAGCTGTCCTGGCTCAAG
ATTATATTGCTGCATGCACTCCAGGAAGGGCATACAAAAATTAATGTTGA
ATTCATCGAGTAATTTCTGGTGCTCAGTAGTAAAGTAACTCTCCCGGATG
TCCTTCTCGTATTCACCCAGCTCGACTACTCTTTTTGCAGAGGCTGCGTG
CCACTGTGCCAACTTCTTGAGGACCGCCTCCACTTCAAACTGCTCCAATC
CCTGGGTTCTGTCGGCATTCCTATATCCCTTTCTCCGCAGATCCTCCAAA
AGAATGTAGTCGCTTTTTACCGGCTCTCCTGNAAACTTCAGATGAACAGG
CT
BO07656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10675-PA | 1230 | CG10675-RA | 344..1227 | 902..19 | 4351 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1450 | CG10675-RA | 401..1284 | 902..19 | 4379 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25330423..25330751 | 574..902 | 1604 | 99.1 | Plus |
3R | 32079331 | 3R | 25329950..25330142 | 207..399 | 965 | 100 | Plus |
3R | 32079331 | 3R | 25329696..25329884 | 19..207 | 945 | 100 | Plus |
3R | 32079331 | 3R | 25330197..25330372 | 398..573 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:28:15 has no hits.
BO07656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:23 Download gff for
BO07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 344..1230 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:13 Download gff for
BO07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 344..1230 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:49 Download gff for
BO07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 401..1284 | 19..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:59 Download gff for
BO07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 401..1284 | 19..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:59 Download gff for
BO07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25329696..25329883 | 19..206 | 100 | <- | Plus |
3R | 25329950..25330141 | 207..398 | 100 | <- | Plus |
3R | 25330198..25330372 | 399..573 | 100 | <- | Plus |
3R | 25330423..25330751 | 574..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:49 Download gff for
BO07656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21155418..21155605 | 19..206 | 100 | <- | Plus |
arm_3R | 21155672..21155863 | 207..398 | 100 | <- | Plus |
arm_3R | 21155920..21156094 | 399..573 | 100 | <- | Plus |
arm_3R | 21156145..21156473 | 574..902 | 99 | | Plus |
BO07656.5prime Sequence
964 bp (804 high quality bases) assembled on 2006-01-06
> BO07656.5prime
GAAGTTATCAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCA
AGGAGCTATTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCG
ATCATTAAATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTT
GACGATCGTGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCA
TAGAAGATGTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAG
AAGAACGACTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCA
TCTGATACCAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCAC
CAAAATTCAAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGC
GACTACATTCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGA
CAGAACCCAGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGT
TGGCACAGTGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAA
TACGAGAAGGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATT
ACTCGATGAATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGC
AGCAATATAATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACA
TCTCAACTGACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGA
GTTATCTGTGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCA
AGTATAAAAACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAG
CTCCCAAAATATGGCACACCCGCCCCAGATCTTCTATGCATACTGATGAC
CTCACCTAAGTTTTCAATCAAACTGGACAAATTCGACTATTTCATAGAGT
ATTATCACCAGCAG
BO07656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10675-PA | 1230 | CG10675-RA | 1..948 | 17..964 | 4715 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1450 | CG10675-RA | 58..1005 | 17..964 | 4725 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25330423..25330921 | 688..190 | 2495 | 100 | Minus |
3R | 32079331 | 3R | 25330197..25330372 | 864..689 | 880 | 100 | Minus |
3R | 32079331 | 3R | 25330968..25331146 | 195..17 | 880 | 99.4 | Minus |
3R | 32079331 | 3R | 25330041..25330142 | 964..863 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:41:13 has no hits.
BO07656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:24 Download gff for
BO07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:14 Download gff for
BO07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:10 Download gff for
BO07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 51..1005 | 10..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:02 Download gff for
BO07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 51..1005 | 10..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:02 Download gff for
BO07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25330041..25330141 | 864..964 | 99 | <- | Minus |
3R | 25330198..25330372 | 689..863 | 100 | <- | Minus |
3R | 25330423..25330919 | 192..688 | 100 | <- | Minus |
3R | 25330972..25331153 | 10..191 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:10 Download gff for
BO07656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21155763..21155863 | 864..964 | 99 | <- | Minus |
arm_3R | 21155920..21156094 | 689..863 | 100 | <- | Minus |
arm_3R | 21156145..21156641 | 192..688 | 100 | <- | Minus |
arm_3R | 21156694..21156875 | 10..191 | 98 | | Minus |
BO07656.complete Sequence
1261 bp (1261 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630879
> BO07656.complete
GAAGTTATCAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCA
AGGAGCTATTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCG
ATCATTAAATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTT
GACGATCGTGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCA
TAGAAGATGTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAG
AAGAACGACTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCA
TCTGATACCAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCAC
CAAAATTCAAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGC
GACTACATTCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGA
CAGAACCCAGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGT
TGGCACAGTGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAA
TACGAGAAGGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATT
ACTCGATGAATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGC
AGCAATATAATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACA
TCTCAACTGACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGA
GTTATCTGTGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCA
AGTATAAAAACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAG
CTCCCAAAATATGGCACACCCGCCCAAGATCTTCTATGCATACTGATGAC
CTCACCTAAGTTTTCAATCAAACTGGACAAATTCGACTATTTCATAGAGT
ATTATCACCAGCAGCTAGTCGAACACCTCACTATGCTCAATTACAATCGG
AATGCACCCACACTATCCAAGTTCCACGCCCATCTACACCGATATAGTCT
CTGGGCTTTCATATGCGCCCAGCGAATGCTTCCAATTGTTCTGCTCCCGC
CCGATGTTGATTCACATATAGGCAACGTAATGGGTAATTCGGAGGAGGCG
ATCGCGTTTAAGCGTAAGATGTTCCTGTTGCCGGCTTACGTGGATCAGAT
AAAAGTCATATTGCCATGGCTCATTAACCGGGGTTACATAAGAGCAAGCT
TTCTAGACCAT
BO07656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1230 | CG10675-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1450 | CG10675-RA | 58..1284 | 17..1243 | 6135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25330423..25330921 | 688..190 | 2495 | 100 | Minus |
3R | 32079331 | 3R | 25329950..25330142 | 1055..863 | 965 | 100 | Minus |
3R | 32079331 | 3R | 25329696..25329884 | 1243..1055 | 945 | 100 | Minus |
3R | 32079331 | 3R | 25330197..25330372 | 864..689 | 880 | 100 | Minus |
3R | 32079331 | 3R | 25330968..25331146 | 195..17 | 880 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:00:10 has no hits.
BO07656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:24 Download gff for
BO07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 1..1230 | 17..1244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:12 Download gff for
BO07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 50..1283 | 10..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:58:20 Download gff for
BO07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 58..1284 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:24 Download gff for
BO07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 50..1283 | 10..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:18 Download gff for
BO07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 58..1284 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:18 Download gff for
BO07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25329950..25330141 | 864..1055 | 100 | <- | Minus |
3R | 25330198..25330372 | 689..863 | 100 | <- | Minus |
3R | 25329694..25329883 | 1056..1245 | 98 | <- | Minus |
3R | 25330423..25330919 | 192..688 | 100 | <- | Minus |
3R | 25330972..25331146 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:58:20 Download gff for
BO07656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21155416..21155605 | 1056..1245 | 98 | <- | Minus |
arm_3R | 21155672..21155863 | 864..1055 | 100 | <- | Minus |
arm_3R | 21155920..21156094 | 689..863 | 100 | <- | Minus |
arm_3R | 21156145..21156641 | 192..688 | 100 | <- | Minus |
arm_3R | 21156694..21156868 | 17..191 | 100 | | Minus |
BO07656.pep Sequence
Translation from 16 to 1261
> BO07656.pep
MTDQPTPQWVTKELFSSLLEQSNRNFKAIIKFVPTSAISKGENYLTIVLR
IQIEMQLKDNSIEDVSYILKIPLVPEDEKNDFHEMFDAELDMYDHLIPEL
EDLYAKNTSISPKFKPVHLKFPGEPVKSDYILLEDLRKKGYRNADRTQGL
EQFEVEAVLKKLAQWHAASAKRVVELGEYEKDIRESYFTTEHQKLLDEFN
INFCMPFLECMQQYNLEPGQLVLISDYTSQLTDLNIEFGKNDPLELSVLN
HGDFWCNNFMFKYKNASEVEDVCFVDFQLPKYGTPAQDLLCILMTSPKFS
IKLDKFDYFIEYYHQQLVEHLTMLNYNRNAPTLSKFHAHLHRYSLWAFIC
AQRMLPIVLLPPDVDSHIGNVMGNSEEAIAFKRKMFLLPAYVDQIKVILP
WLINRGYIRASFLDH
BO07656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-PA | 409 | CG10675-PA | 1..409 | 1..409 | 2163 | 100 | Plus |
CG10562-PA | 405 | CG10562-PA | 1..401 | 1..406 | 726 | 38.6 | Plus |
CHKov1-PE | 410 | CG10618-PE | 7..405 | 7..406 | 715 | 36.2 | Plus |
CG10560-PA | 414 | CG10560-PA | 16..411 | 5..406 | 700 | 36.6 | Plus |
CG10553-PA | 414 | CG10553-PA | 18..411 | 7..406 | 669 | 35.7 | Plus |