Clone Sequence Records
BO07658.3prime Sequence
924 bp (813 high quality bases) assembled on 2006-01-06
> BO07658.3prime
ATGGTCTAGAAAGCTTGCAGGAATGGGCTGATGCATTTCGAATACAGTGC
GCTCCATGGCGAATGTGCGCTTGGAACGCTGTATGGCGACATTTTCCATT
GCTTCGTTGAACTCCAGAAGAGCCTTGCTGAATTCCGAATCGCTCTCGAT
CATCCTGAGGAATATGGTCGCCTCGTCCTCAACCTTCGGCTCCATCTCCT
TCTTGGCCTGACCCTTCTTCTTCTTGGCCTCCAGCTTTTCCCTGGACTTG
CGTTCCTCCTCCAAGAAGATGGTGGTCAGGCGCTTCTTCAACTTGATCTC
TTCCTCGCGAGCCTCCAGAAGTTTGCAGCGCTGTATCTCCCGTTCAAACA
TCGACATCATGAGAGACTTCTCCTTGTTGGTGGCACTTCGCATACCCTCC
TCCAGGCGGAGCATCAGGCAATCGCCGTTGGCCAGGCTCACGGTTAGCAT
TGTTCCATCCGGCTTGAACACCAGATGGGTAACGGCGTACTTGTATTTGA
TGGTGAGAATCGGTCGTTTGTGAGACATCAGCAGGTCCCAAAACTCCAAG
TTGCCCATGTTGTCTCCGATGCAGAACAGCGAGCAGCGTCCCGTGCTCCA
GGCACCGCTCAGCAACTGATTTGGCCGGCGGAAGTAGAAGGTACTGGGGC
AGTTCTTTACTTCCTCCGACCAGATCCGCACCCGCCAATCGCCCACCACC
AAGAAGTTCTTTACAAAGAACGGATTACGCATTACACAGCGAATGGGACC
GGCAAAAAGTTGATAGGCAGCAACGATAGTATCCTGCGGAGTGGTGCCCT
TGCGATTGCCTACGAACAAGTAACCCATATCGGTGCAGAATATGAAGCGC
ACTGGTATGGTGTACTCGAACTCGAGAAAAGTTACGCCATGTGCATCCTG
GCGATTTTGAACTGTCTGGGGGTC
BO07658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-PA | 1884 | CG10859-RA | 976..1881 | 924..19 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1989 | CG10859-RB | 999..1904 | 924..19 | 4530 | 100 | Minus |
| CG10859-RA | 2209 | CG10859-RA | 1219..2124 | 924..19 | 4530 | 100 | Minus |
| CG1571-RA | 2301 | CG1571-RA | 1283..1501 | 873..655 | 345 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13396874..13397446 | 352..924 | 2865 | 100 | Plus |
| 2L | 23513712 | 2L | 13396477..13396810 | 19..352 | 1670 | 100 | Plus |
| X | 23542271 | X | 8077159..8077377 | 873..655 | 345 | 77.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:04:08 has no hits.
BO07658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:27 Download gff for
BO07658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 976..1884 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:18 Download gff for
BO07658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 976..1884 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:01 Download gff for
BO07658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 1219..2124 | 19..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:12 Download gff for
BO07658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 1219..2124 | 19..924 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:12 Download gff for
BO07658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13396477..13396809 | 19..351 | 100 | <- | Plus |
| 2L | 13396874..13397446 | 352..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:01 Download gff for
BO07658.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13396477..13396809 | 19..351 | 100 | <- | Plus |
| arm_2L | 13396874..13397446 | 352..924 | 100 | | Plus |
BO07658.5prime Sequence
983 bp (839 high quality bases) assembled on 2006-01-06
> BO07658.5prime
GAAGTTATCAGTCGACATGGGAACCTTGGGCAATCAGTTCATCCTCTCGC
GGGAGCGTCGCCGGTTCGGGAGGCAGTGCCTCTTCACAGACCGCAACGAG
ATGATCCTCAGTGTGCAGCCGAGTGGACGGTTGCGCCTCAAGTACATACT
GCGCAATCCGATCAACGAACGGACCCAGCTGAGCGAACAGTATGCAGCAT
CTTCAGTGTTGACACACAACGTGACCCTGGATTCCCATGGCTTGAATCAC
TACGAAGGCGGCTGGAACGTCAAGGAGGTGAACATTATGGACGAGGAGTC
CACAATGCGCTATCGCAAAAAAGTCGAGCGTGATGACTCCTGGGGCATCG
AGGTGAACCAATTGATGCACGCCGCAATGGACATCAGTTCGGCCAACAAT
GCTGTCAACATCTACGAGGACTTCTTTGTGGATCTACCGGAGGATTTGGG
CCGCGGCATCAGCATGAAGATCGCTGCCAGGGGTACCCATGTCTTTCATG
ATCTGTGGATCCCATCGCGTAGGCTGATGACGTGCGAATGGCTAAACAAC
GATCCCAATCAGTTTCTCCTGTTCTATTCCAATCGAATGAGCCTGACACC
GGACTACACAAAACAGCTAAACACGCTGCCCGATTTTGGCAACGATAATC
CGCATGCATTCTACATTTGGAACTTGGATGATGCCACCCGACCGGCTGCC
CATTACGATTCTAGGAGAGTCGTACGGGTTGCCAAGGTGTGCCTGCGGGA
TGAGAGCTACATGGTGGGTGGACTACAGGAGGGTCAGGTCGGCTTCTGGC
TAACCGAGAACCAGGGTGGTCCCAAGAGCATGTGTCCCCTGGAGGCGTGT
CATCGCGAGGCCACAACGGCCATCTGCTGGGTGCACTCGAAACTCAACAC
TGAGTTTTACTCAGGATCACTGGATGGGTCCATCAGTACTGGGATACCCC
GGGATCTTCTTATGCCGGTTCATGAAGTGCTGG
BO07658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-PA | 1884 | CG10859-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
| CG10859-PA | 1884 | CG10859-RA | 932..967 | 948..983 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1989 | CG10859-RB | 24..990 | 17..983 | 4775 | 99.7 | Plus |
| CG10859-RA | 2209 | CG10859-RA | 244..1210 | 17..983 | 4775 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13397455..13398421 | 983..17 | 4725 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:14:04 has no hits.
BO07658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:28 Download gff for
BO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 1..967 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:20 Download gff for
BO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 1..967 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:44 Download gff for
BO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..1210 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:11 Download gff for
BO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..1210 | 17..983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:11 Download gff for
BO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13397455..13398421 | 17..983 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:44 Download gff for
BO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13397455..13398421 | 17..983 | 99 | | Minus |
BO07658.complete Sequence
1915 bp (1915 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630880
> BO07658.complete
GAAGTTATCAGTCGACATGGGAACCTTGGGCAATCAGTTCATCCTCTCGC
GGGAGCGTCGCCGGTTCGGGAGGCAGTGCCTCTTCACAGACCGCAACGAG
ATGATCCTCAGTGTGCAGCCGAGTGGACGGTTGCGCCTCAAGTACATACT
GCGCAATCCGATCAACGAACGGACCCAGCTGAGCGAACAGTATGCAGCAT
CTTCAGTGTTGACACACAACGTGACCCTGGATTCCCATGGCTTGAATCAC
TACGAAGGCGGCTGGAACGTCAAGGAGGTGAACATTATGGACGAGGAGTC
CACAATGCGCTATCGCAAAAAAGTCGAGCGTGATGACTCCTGGGGCATCG
AGGTGAACCAATTGATGCACGCCGCAATGGACATCAGTTCGGCCAACAAT
GCTGTCAACATCTACGAGGACTTCTTTGTGGATCTACCGGAGGATTTGGG
CCGCGGCATCAGCATGAAGATCGCTGCCAGGGGTACCCATGTCTTTCATG
ATCTGTGGATCCCATCGCGTAGGCTGATGACGTGCGAATGGCTAAACAAC
GATCCCAATCAGTTTCTCCTGTTCTATTCCAATCGAATGAGCCTGACACC
GGACTACACAAAACAGCTAAACACGCTGCCCGATTTTGGCAACGATAATC
CGCATGCATTCTACATTTGGAACTTGGATGATGCCACCCGACCGGCTGCC
CATTACGATTCTAGGAGAGTCGTACGGGTTGCCAAGGTGTGCCTGCGGGA
TGAGAGCTACATGGTGGGTGGACTACAGGAGGGTCAGGTCGGCTTCTGGC
TAACCGAGAACCAGGGTGGTCCCAAGAGCATGTGTCCCCTGGAGGCGTGT
CATCGCGAGGCCACAACGGCCATCTGCTGGGTGCACTCGAAACTCAACAC
TGAGTTTTACTCAGGATCACTGGATGGGTCCATCAAGTACTGGGATACCC
GGGATCTTCTTATGCCGGTTCATGAGGTGCTGGCCGAACCGGACCCCCAG
ACAGTTCAAAATCGCCAGGATGCACATGGCGTAACTTTTCTCGAGTTCGA
GTACACCATACCAGTGCGCTTCATATTCTGCACCGATATGGGTTACTTGT
TCGTAGGCAATCGCAAGGGCACCACTCCGCAGGATACTATCGTTGCTGCC
TATCAACTTTTTGCCGGTCCCATTCGCTGTGTAATGCGTAATCCGTTCTT
TGTAAAGAACTTCTTGGTGGTGGGCGATTGGCGGGTGCGGATCTGGTCGG
AGGAAGTAAAGAACTGCCCCAGTACCTTCTACTTCCGCCGGCCAAATCAG
TTGCTGAGCGGTGCCTGGAGCACGGGACGCTGCTCGCTGTTCTGCATCGG
AGACAACATGGGCAACTTGGAGTTTTGGGACCTGCTGATGTCTCACAAAC
GACCGATTCTCACCATCAAATACAAGTACGCCGTTACCCATCTGGTGTTC
AAGCCGGATGGAACAATGCTAACCGTGAGCCTGGCCAACGGCGATTGCCT
GATGCTCCGCCTGGAGGAGGGTATGCGAAGTGCCACCAACAAGGAGAAGT
CTCTCATGATGTCGATGTTTGAACGGGAGATACAGCGCTGCAAACTTCTG
GAGGCTCGCGAGGAAGAGATCAAGTTGAAGAAGCGCCTGACCACCATCTT
CTTGGAGGAGGAACGCAAGTCCAGGGAAAAGCTGGAGGCCAAGAAGAAGA
AGGGTCAGGCCAAGAAGGAGATGGAGCCGAAGGTTGAGGACGAGGCGACC
ATATTCCTCAGGATGATCGAGAGCGATTCGGAATTCAGCAAGGCTCTTCT
GGAGTTCAACGAAGCAATGGAAAATGTCGCCATACAGCGTTCCAAGCGCA
CATTCGCCATGGAGCGCACTGTATTCGAAATGCATCAGCCCATTCCTGCA
AGCTTTCTAGACCAT
BO07658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1884 | CG10859-PB | 1..1881 | 17..1897 | 9405 | 100 | Plus |
| CG10859-RA | 1884 | CG10859-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
| CG1571-RA | 1956 | CG1571-PA | 799..1224 | 836..1261 | 450 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1989 | CG10859-RB | 24..1904 | 17..1897 | 9405 | 100 | Plus |
| CG10859-RA | 2209 | CG10859-RA | 244..2124 | 17..1897 | 9405 | 100 | Plus |
| CG1571-RA | 2301 | CG1571-RA | 1076..1501 | 836..1261 | 450 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13396874..13398421 | 1564..17 | 7740 | 100 | Minus |
| 2L | 23513712 | 2L | 13396477..13396810 | 1897..1564 | 1670 | 100 | Minus |
| X | 23542271 | X | 8076952..8077377 | 836..1261 | 450 | 73.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:44 has no hits.
BO07658.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:36 Download gff for
BO07658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 1..1884 | 17..1900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:26 Download gff for
BO07658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..2124 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:44 Download gff for
BO07658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..2124 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:36 Download gff for
BO07658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..2124 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:15 Download gff for
BO07658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..2124 | 17..1899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:15 Download gff for
BO07658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13396474..13396809 | 1565..1899 | 99 | <- | Minus |
| 2L | 13396874..13398421 | 17..1564 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:44 Download gff for
BO07658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13396474..13396809 | 1565..1899 | 99 | <- | Minus |
| arm_2L | 13396874..13398421 | 17..1564 | 100 | | Minus |
BO07658.pep Sequence
Translation from 16 to 1915
> BO07658.pep
MGTLGNQFILSRERRRFGRQCLFTDRNEMILSVQPSGRLRLKYILRNPIN
ERTQLSEQYAASSVLTHNVTLDSHGLNHYEGGWNVKEVNIMDEESTMRYR
KKVERDDSWGIEVNQLMHAAMDISSANNAVNIYEDFFVDLPEDLGRGISM
KIAARGTHVFHDLWIPSRRLMTCEWLNNDPNQFLLFYSNRMSLTPDYTKQ
LNTLPDFGNDNPHAFYIWNLDDATRPAAHYDSRRVVRVAKVCLRDESYMV
GGLQEGQVGFWLTENQGGPKSMCPLEACHREATTAICWVHSKLNTEFYSG
SLDGSIKYWDTRDLLMPVHEVLAEPDPQTVQNRQDAHGVTFLEFEYTIPV
RFIFCTDMGYLFVGNRKGTTPQDTIVAAYQLFAGPIRCVMRNPFFVKNFL
VVGDWRVRIWSEEVKNCPSTFYFRRPNQLLSGAWSTGRCSLFCIGDNMGN
LEFWDLLMSHKRPILTIKYKYAVTHLVFKPDGTMLTVSLANGDCLMLRLE
EGMRSATNKEKSLMMSMFEREIQRCKLLEAREEEIKLKKRLTTIFLEEER
KSREKLEAKKKKGQAKKEMEPKVEDEATIFLRMIESDSEFSKALLEFNEA
MENVAIQRSKRTFAMERTVFEMHQPIPASFLDH
BO07658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-PB | 627 | CG10859-PB | 1..627 | 1..627 | 3329 | 100 | Plus |
| CG10859-PA | 627 | CG10859-PA | 1..627 | 1..627 | 3329 | 100 | Plus |
| CG1571-PA | 651 | CG1571-PA | 4..608 | 6..625 | 1778 | 54.8 | Plus |
| CG6053-PB | 576 | CG6053-PB | 2..518 | 7..538 | 751 | 32.6 | Plus |
| CG6053-PC | 585 | CG6053-PC | 2..518 | 7..538 | 751 | 32.6 | Plus |
