Clone Sequence Records
BO07659.3prime Sequence
819 bp (818 high quality bases) assembled on 2006-01-06
> BO07659.3prime
ATGGTCTAGAAAGCTTGCAATGTCATCCGGAGGTATGGCGACAGCGTAGA
TGGCGAATCCGATGAACACAATGCCACCCACAATGGTGACAGTGCGCACT
GAGATTTTGGAAGCCACGAGACGACCACCAATCACAGCCAGGCCGGTGCA
GATGCAGTGGCCAATAATACCGCCAGCGATAACGCCGTAAACGTCCTTGC
TAGCGGCGAGAATAATGGTGGTCAGTTGGGAGCGATCGCCCCACTCGGCC
AGGAACGTCATTGTGAAGGCCTGGGCCAGGATGCGCATGGTGAAGTAGGT
GGCACCCCGTTTCTGTGGACGACGACGACCGCTCTCGGCGTCATTCACCA
GCGCCGCGTTCACATCACGATCCAGCTCATCCTCGCGCTTGCGCAGATCA
GTTTGCACCTCTTCCAGTTCTTCCTGAGCGTCGGTTGGTTTCATTTTGTA
GCCGTCGTACAGCATTTTTAAACCAAATATTAAAAATAATGCAGTTGAGA
TATAATACGTATAAATCTTAGGAATAAAGTTCGCTGCCATGCCAAATGCG
CATGAGAGTACCGTCATTAGCGCCAAGGCGGCGATGGCACCGCCAAAGAC
AATCAAACGCGGATGGCGCATGGCCATTATGGCAGCGATAAAGAAAGTCT
TATCCCCTAGCTCTGTTAGTAAGATAACAGAGATCGATGCGGTAAACGCA
TCGATAAAGGTGCCCTTCGTTTTCGGCCGGTCCGCAGCATCTTTTGGTTT
CTCCGCTAAAGAACTCAGATCCGTTGGCCTATTCAAATCTCCCTGCACGT
CCAAGTTGCTCTGTATTCC
BO07659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4196-PC | 972 | CG4196-RC | 169..969 | 819..19 | 4005 | 100 | Minus |
CG4196-PB | 972 | CG4196-RB | 169..969 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42542-RF | 2063 | CG42542-RF | 631..1431 | 819..19 | 4005 | 100 | Minus |
CG42542-RC | 1675 | CG42542-RC | 340..1140 | 819..19 | 4005 | 100 | Minus |
CG42542-RB | 1650 | CG42542-RB | 315..1115 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15199214..15199504 | 807..517 | 1455 | 100 | Minus |
3R | 32079331 | 3R | 15202022..15202204 | 377..195 | 915 | 100 | Minus |
3R | 32079331 | 3R | 15202264..15202442 | 197..19 | 895 | 100 | Minus |
3R | 32079331 | 3R | 15199568..15199710 | 518..376 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:55:28 has no hits.
BO07659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:29 Download gff for
BO07659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4196-PC | 169..972 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:21 Download gff for
BO07659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4196-PB | 169..972 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:52 Download gff for
BO07659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RB | 315..1120 | 13..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:58 Download gff for
BO07659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RB | 315..1120 | 13..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:58 Download gff for
BO07659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15199214..15199504 | 517..807 | 100 | -> | Minus |
3R | 15199570..15199710 | 376..516 | 100 | -> | Minus |
3R | 15202024..15202203 | 196..375 | 100 | -> | Minus |
3R | 15202266..15202447 | 13..195 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:52 Download gff for
BO07659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11024936..11025226 | 517..807 | 100 | -> | Minus |
arm_3R | 11025292..11025432 | 376..516 | 100 | -> | Minus |
arm_3R | 11027746..11027925 | 196..375 | 100 | -> | Minus |
arm_3R | 11027988..11028169 | 13..195 | 98 | | Minus |
BO07659.5prime Sequence
856 bp (803 high quality bases) assembled on 2006-01-06
> BO07659.5prime
GAAGTTATCAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGA
CCAGACACAATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTG
GCCCTGATGGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCA
ACCGGATAGTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACT
TGGACGTGCAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCG
GAGAAACCAAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTAT
CGATGCGTTTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGG
ATAAGACTTTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTG
ATTGTCTTTGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTC
ATGCGCATTTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATT
ATATCTCAACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGAC
GGCTACAAAATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCA
AACTGATCTGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGG
CGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGT
GCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTT
CCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCG
CTAGCAAGGACGTTTACGGCGTTATCGCTGGCGGTATTATTGGCCACTGC
ATCTGC
BO07659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4196-PC | 972 | CG4196-RC | 1..840 | 17..856 | 4200 | 100 | Plus |
CG4196-PB | 972 | CG4196-RB | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42542-RF | 2063 | CG42542-RF | 463..1302 | 17..856 | 4200 | 100 | Plus |
CG42542-RC | 1675 | CG42542-RC | 172..1011 | 17..856 | 4200 | 100 | Plus |
CG42542-RB | 1650 | CG42542-RB | 147..986 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15199214..15199504 | 197..487 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 15202022..15202204 | 627..809 | 915 | 100 | Plus |
3R | 32079331 | 3R | 15198971..15199150 | 17..196 | 900 | 100 | Plus |
3R | 32079331 | 3R | 15199568..15199710 | 486..628 | 715 | 100 | Plus |
3R | 32079331 | 3R | 15202264..15202313 | 807..856 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:40:05 has no hits.
BO07659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:30 Download gff for
BO07659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4196-PC | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:23 Download gff for
BO07659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4196-PB | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:29 Download gff for
BO07659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RB | 139..986 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:42 Download gff for
BO07659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RB | 139..986 | 9..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:42 Download gff for
BO07659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15198963..15199150 | 9..196 | 98 | -> | Plus |
3R | 15199214..15199504 | 197..487 | 100 | -> | Plus |
3R | 15199570..15199710 | 488..628 | 100 | -> | Plus |
3R | 15202024..15202203 | 629..808 | 100 | -> | Plus |
3R | 15202266..15202313 | 809..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:29 Download gff for
BO07659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11024685..11024872 | 9..196 | 98 | -> | Plus |
arm_3R | 11024936..11025226 | 197..487 | 100 | -> | Plus |
arm_3R | 11025292..11025432 | 488..628 | 100 | -> | Plus |
arm_3R | 11027746..11027925 | 629..808 | 100 | -> | Plus |
arm_3R | 11027988..11028035 | 809..856 | 100 | | Plus |
BO07659.complete Sequence
1003 bp (1003 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630881
> BO07659.complete
GAAGTTATCAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGA
CCAGACACAATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTG
GCCCTGATGGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCA
ACCGGATAGTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACT
TGGACGTGCAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCG
GAGAAACCAAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTAT
CGATGCGTTTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGG
ATAAGACTTTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTG
ATTGTCTTTGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTC
ATGCGCATTTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATT
ATATCTCAACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGAC
GGCTACAAAATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCA
AACTGATCTGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGG
CGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGT
GCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTT
CCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCG
CTAGCAAGGACGTTTACGGCGTTATCGCTGGCGGTATTATTGGCCACTGC
ATCTGCACCGGCCTGGCTGTGATTGGTGGTCGTCTCGTGGCTTCCAAAAT
CTCAGTGCGCACTGTCACCATTGTGGGTGGCATTGTGTTCATCGGATTCG
CCATCTACGCTGTCGCCATACCTCCGGATGACATTGCAAGCTTTCTAGAC
CAT
BO07659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42542-RF | 972 | CG42542-PF | 1..969 | 17..985 | 4845 | 100 | Plus |
CG42542-RC | 972 | CG42542-PC | 1..969 | 17..985 | 4845 | 100 | Plus |
CG42542-RB | 972 | CG42542-PB | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42542-RF | 2063 | CG42542-RF | 463..1431 | 17..985 | 4845 | 100 | Plus |
CG42542-RC | 1675 | CG42542-RC | 172..1140 | 17..985 | 4845 | 100 | Plus |
CG42542-RB | 1650 | CG42542-RB | 147..1115 | 17..985 | 4845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15199214..15199504 | 197..487 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 15202022..15202204 | 627..809 | 915 | 100 | Plus |
3R | 32079331 | 3R | 15198971..15199150 | 17..196 | 900 | 100 | Plus |
3R | 32079331 | 3R | 15202264..15202442 | 807..985 | 895 | 100 | Plus |
3R | 32079331 | 3R | 15199568..15199710 | 486..628 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:28 has no hits.
BO07659.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:25 Download gff for
BO07659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4196-RB | 1..972 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:47 Download gff for
BO07659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4196-RB | 183..1164 | 9..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:49 Download gff for
BO07659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RB | 147..1115 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:25 Download gff for
BO07659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4196-RB | 183..1164 | 9..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:26 Download gff for
BO07659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RB | 147..1115 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:26 Download gff for
BO07659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15199214..15199504 | 197..487 | 100 | -> | Plus |
3R | 15199570..15199710 | 488..628 | 100 | -> | Plus |
3R | 15202024..15202203 | 629..808 | 100 | -> | Plus |
3R | 15202266..15202442 | 809..987 | 98 | | Plus |
3R | 15198971..15199150 | 17..196 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:49 Download gff for
BO07659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11024693..11024872 | 17..196 | 100 | -> | Plus |
arm_3R | 11024936..11025226 | 197..487 | 100 | -> | Plus |
arm_3R | 11025292..11025432 | 488..628 | 100 | -> | Plus |
arm_3R | 11027746..11027925 | 629..808 | 100 | -> | Plus |
arm_3R | 11027988..11028164 | 809..987 | 98 | | Plus |
BO07659.pep Sequence
Translation from 16 to 1003
> BO07659.pep
MSQNQSYFWQTTRHNVYLKRSAKWHMALALMVVLTFGTICAAEAQPDSAD
NAVIESGIQSNLDVQGDLNRPTDLSSLAEKPKDAADRPKTKGTFIDAFTA
SISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIAALALMTVLSCAFGM
AANFIPKIYTYYISTALFLIFGLKMLYDGYKMKPTDAQEELEEVQTDLRK
REDELDRDVNAALVNDAESGRRRPQKRGATYFTMRILAQAFTMTFLAEWG
DRSQLTTIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRTV
TIVGGIVFIGFAIYAVAIPPDDIASFLDH
BO07659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42542-PF | 323 | CG42542-PF | 1..323 | 1..323 | 1633 | 100 | Plus |
CG42542-PC | 323 | CG4196-PB | 1..323 | 1..323 | 1633 | 100 | Plus |
CG42542-PB | 323 | CG4196-PC | 1..323 | 1..323 | 1633 | 100 | Plus |
CG42542-PD | 503 | CG42542-PD | 1..221 | 1..222 | 1046 | 94.6 | Plus |
CG42542-PE | 503 | CG42542-PE | 1..221 | 1..222 | 1046 | 94.6 | Plus |
CG42542-PD | 503 | CG42542-PD | 385..503 | 205..323 | 597 | 100 | Plus |