Clone BO07659 Report

Search the DGRC for BO07659

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG42542-RB
Protein status:BO07659.pep: validated full length
Sequenced Size:1003

Clone Sequence Records

BO07659.3prime Sequence

819 bp (818 high quality bases) assembled on 2006-01-06

> BO07659.3prime
ATGGTCTAGAAAGCTTGCAATGTCATCCGGAGGTATGGCGACAGCGTAGA
TGGCGAATCCGATGAACACAATGCCACCCACAATGGTGACAGTGCGCACT
GAGATTTTGGAAGCCACGAGACGACCACCAATCACAGCCAGGCCGGTGCA
GATGCAGTGGCCAATAATACCGCCAGCGATAACGCCGTAAACGTCCTTGC
TAGCGGCGAGAATAATGGTGGTCAGTTGGGAGCGATCGCCCCACTCGGCC
AGGAACGTCATTGTGAAGGCCTGGGCCAGGATGCGCATGGTGAAGTAGGT
GGCACCCCGTTTCTGTGGACGACGACGACCGCTCTCGGCGTCATTCACCA
GCGCCGCGTTCACATCACGATCCAGCTCATCCTCGCGCTTGCGCAGATCA
GTTTGCACCTCTTCCAGTTCTTCCTGAGCGTCGGTTGGTTTCATTTTGTA
GCCGTCGTACAGCATTTTTAAACCAAATATTAAAAATAATGCAGTTGAGA
TATAATACGTATAAATCTTAGGAATAAAGTTCGCTGCCATGCCAAATGCG
CATGAGAGTACCGTCATTAGCGCCAAGGCGGCGATGGCACCGCCAAAGAC
AATCAAACGCGGATGGCGCATGGCCATTATGGCAGCGATAAAGAAAGTCT
TATCCCCTAGCTCTGTTAGTAAGATAACAGAGATCGATGCGGTAAACGCA
TCGATAAAGGTGCCCTTCGTTTTCGGCCGGTCCGCAGCATCTTTTGGTTT
CTCCGCTAAAGAACTCAGATCCGTTGGCCTATTCAAATCTCCCTGCACGT
CCAAGTTGCTCTGTATTCC

BO07659.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4196-PC 972 CG4196-RC 169..969 819..19 4005 100 Minus
CG4196-PB 972 CG4196-RB 169..969 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42542-RF 2063 CG42542-RF 631..1431 819..19 4005 100 Minus
CG42542-RC 1675 CG42542-RC 340..1140 819..19 4005 100 Minus
CG42542-RB 1650 CG42542-RB 315..1115 819..19 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15199214..15199504 807..517 1455 100 Minus
3R 32079331 3R 15202022..15202204 377..195 915 100 Minus
3R 32079331 3R 15202264..15202442 197..19 895 100 Minus
3R 32079331 3R 15199568..15199710 518..376 715 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:55:28 has no hits.

BO07659.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:29 Download gff for BO07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4196-PC 169..972 18..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:21 Download gff for BO07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4196-PB 169..972 18..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:52 Download gff for BO07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42542-RB 315..1120 13..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:58 Download gff for BO07659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42542-RB 315..1120 13..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:58 Download gff for BO07659.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15199214..15199504 517..807 100 -> Minus
3R 15199570..15199710 376..516 100 -> Minus
3R 15202024..15202203 196..375 100 -> Minus
3R 15202266..15202447 13..195 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:52 Download gff for BO07659.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11024936..11025226 517..807 100 -> Minus
arm_3R 11025292..11025432 376..516 100 -> Minus
arm_3R 11027746..11027925 196..375 100 -> Minus
arm_3R 11027988..11028169 13..195 98   Minus

BO07659.5prime Sequence

856 bp (803 high quality bases) assembled on 2006-01-06

> BO07659.5prime
GAAGTTATCAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGA
CCAGACACAATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTG
GCCCTGATGGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCA
ACCGGATAGTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACT
TGGACGTGCAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCG
GAGAAACCAAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTAT
CGATGCGTTTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGG
ATAAGACTTTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTG
ATTGTCTTTGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTC
ATGCGCATTTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATT
ATATCTCAACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGAC
GGCTACAAAATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCA
AACTGATCTGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGG
CGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGT
GCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTT
CCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCG
CTAGCAAGGACGTTTACGGCGTTATCGCTGGCGGTATTATTGGCCACTGC
ATCTGC

BO07659.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4196-PC 972 CG4196-RC 1..840 17..856 4200 100 Plus
CG4196-PB 972 CG4196-RB 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42542-RF 2063 CG42542-RF 463..1302 17..856 4200 100 Plus
CG42542-RC 1675 CG42542-RC 172..1011 17..856 4200 100 Plus
CG42542-RB 1650 CG42542-RB 147..986 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15199214..15199504 197..487 1455 100 Plus
3R 32079331 3R 15202022..15202204 627..809 915 100 Plus
3R 32079331 3R 15198971..15199150 17..196 900 100 Plus
3R 32079331 3R 15199568..15199710 486..628 715 100 Plus
3R 32079331 3R 15202264..15202313 807..856 250 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:40:05 has no hits.

BO07659.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:30 Download gff for BO07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4196-PC 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:23 Download gff for BO07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4196-PB 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:29 Download gff for BO07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42542-RB 139..986 9..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:42 Download gff for BO07659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42542-RB 139..986 9..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:42 Download gff for BO07659.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15198963..15199150 9..196 98 -> Plus
3R 15199214..15199504 197..487 100 -> Plus
3R 15199570..15199710 488..628 100 -> Plus
3R 15202024..15202203 629..808 100 -> Plus
3R 15202266..15202313 809..856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:29 Download gff for BO07659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11024685..11024872 9..196 98 -> Plus
arm_3R 11024936..11025226 197..487 100 -> Plus
arm_3R 11025292..11025432 488..628 100 -> Plus
arm_3R 11027746..11027925 629..808 100 -> Plus
arm_3R 11027988..11028035 809..856 100   Plus

BO07659.complete Sequence

1003 bp (1003 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630881

> BO07659.complete
GAAGTTATCAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGA
CCAGACACAATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTG
GCCCTGATGGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCA
ACCGGATAGTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACT
TGGACGTGCAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCG
GAGAAACCAAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTAT
CGATGCGTTTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGG
ATAAGACTTTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTG
ATTGTCTTTGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTC
ATGCGCATTTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATT
ATATCTCAACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGAC
GGCTACAAAATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCA
AACTGATCTGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGG
CGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGT
GCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTT
CCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCG
CTAGCAAGGACGTTTACGGCGTTATCGCTGGCGGTATTATTGGCCACTGC
ATCTGCACCGGCCTGGCTGTGATTGGTGGTCGTCTCGTGGCTTCCAAAAT
CTCAGTGCGCACTGTCACCATTGTGGGTGGCATTGTGTTCATCGGATTCG
CCATCTACGCTGTCGCCATACCTCCGGATGACATTGCAAGCTTTCTAGAC
CAT

BO07659.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42542-RF 972 CG42542-PF 1..969 17..985 4845 100 Plus
CG42542-RC 972 CG42542-PC 1..969 17..985 4845 100 Plus
CG42542-RB 972 CG42542-PB 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42542-RF 2063 CG42542-RF 463..1431 17..985 4845 100 Plus
CG42542-RC 1675 CG42542-RC 172..1140 17..985 4845 100 Plus
CG42542-RB 1650 CG42542-RB 147..1115 17..985 4845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15199214..15199504 197..487 1455 100 Plus
3R 32079331 3R 15202022..15202204 627..809 915 100 Plus
3R 32079331 3R 15198971..15199150 17..196 900 100 Plus
3R 32079331 3R 15202264..15202442 807..985 895 100 Plus
3R 32079331 3R 15199568..15199710 486..628 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:46:28 has no hits.

BO07659.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:25 Download gff for BO07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG4196-RB 1..972 17..986 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:47 Download gff for BO07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG4196-RB 183..1164 9..991 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:49 Download gff for BO07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG42542-RB 147..1115 17..987 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:25 Download gff for BO07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG4196-RB 183..1164 9..991 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:26 Download gff for BO07659.complete
Subject Subject Range Query Range Percent Splice Strand
CG42542-RB 147..1115 17..987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:26 Download gff for BO07659.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15199214..15199504 197..487 100 -> Plus
3R 15199570..15199710 488..628 100 -> Plus
3R 15202024..15202203 629..808 100 -> Plus
3R 15202266..15202442 809..987 98   Plus
3R 15198971..15199150 17..196 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:49 Download gff for BO07659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11024693..11024872 17..196 100 -> Plus
arm_3R 11024936..11025226 197..487 100 -> Plus
arm_3R 11025292..11025432 488..628 100 -> Plus
arm_3R 11027746..11027925 629..808 100 -> Plus
arm_3R 11027988..11028164 809..987 98   Plus

BO07659.pep Sequence

Translation from 16 to 1003

> BO07659.pep
MSQNQSYFWQTTRHNVYLKRSAKWHMALALMVVLTFGTICAAEAQPDSAD
NAVIESGIQSNLDVQGDLNRPTDLSSLAEKPKDAADRPKTKGTFIDAFTA
SISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIAALALMTVLSCAFGM
AANFIPKIYTYYISTALFLIFGLKMLYDGYKMKPTDAQEELEEVQTDLRK
REDELDRDVNAALVNDAESGRRRPQKRGATYFTMRILAQAFTMTFLAEWG
DRSQLTTIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRTV
TIVGGIVFIGFAIYAVAIPPDDIASFLDH

BO07659.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42542-PF 323 CG42542-PF 1..323 1..323 1633 100 Plus
CG42542-PC 323 CG4196-PB 1..323 1..323 1633 100 Plus
CG42542-PB 323 CG4196-PC 1..323 1..323 1633 100 Plus
CG42542-PD 503 CG42542-PD 1..221 1..222 1046 94.6 Plus
CG42542-PE 503 CG42542-PE 1..221 1..222 1046 94.6 Plus
CG42542-PD 503 CG42542-PD 385..503 205..323 597 100 Plus