Clone Sequence Records
BO07660.3prime Sequence
921 bp (756 high quality bases) assembled on 2006-01-06
> BO07660.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGCCTGTGAGCTCTTCAGGTCGACAT
AGGCGCCGGATATGACCTCCTTGCCGGTCTCCACGACCACGGTGCGGAAG
TTGATGCGTGTGCCCTGCTTCCACAAGTCCACGCGCAAAGTCTGGCCCGG
AATTACGGGTCCGGAGAAGCGCACTTTGACAGCCTTGAACAGAGCCGGGT
TGTTGTCCGCAAACTGAGCGAGCACGGCGCGCACCGAGAAGCCCAGTGTG
CAGAGTCCATGGAGGATGGGTGTCTTGAAGCCGGCCAGCAGGGCCATCTG
GGGATCGATATGCAGGGGGTTCTTGTCGCCGGACAGACGGTACAGCGCCG
CCTGGTCCTCGCTGGTCGTATACTGGACGGTTGCGTCCGGTTGGCGATTG
GGCGCCGGCTGCAGCGGAACTACACCAGCGATGGGATCCTTCTTGCCTCC
GAATTTGCCAGCGCCGACAATGAAAGTGGTGCTCTGGTTGCGCACCAACA
GGCGGCCACTTTCGTCGAACGACTCGCTATTGGTGACGACCACGGCGCCG
GATCCCTTGTCCATAACATCGAAGACCTTGCCGTTGGTCAGCAAAGTGCC
ACTGGTGGGCAGATCGTCAACGATCTCTAGGTACTGTTCGCCGTGCAGAA
TGTTGCTGAAGTCCACTTGGCTGTTGGGCAAAGCCTTGCTGAGCAGCTTG
TCGGTGGACATTTGCAGCAGAAGGCCGGGCAGAACGAAGAAAGTTGGAAT
GGCGGCGAAATCGGCATCGTTTTCGTACAGGAAGCGCATGTCCTTCGCGT
TTTTGACGGATGCCCCAATGCCCAGGGCGTAGGTAATAAGCTCTTTGCTA
TTGAACTCGAAAGCATCCTCGATGGCGTCGCCGCCGCCTTCCTTGAGCTT
CTCAAGCACTTCCAGCAGGGT
BO07660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3415-PA | 1797 | CG3415-RA | 892..1794 | 921..19 | 4490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfe2-RB | 2116 | CG3415-RB | 1008..1910 | 921..19 | 4500 | 99.9 | Minus |
| Mfe2-RA | 2225 | CG3415-RA | 1117..2019 | 921..19 | 4500 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16272707..16273609 | 921..19 | 4500 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:00:02 has no hits.
BO07660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:32 Download gff for
BO07660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-PA | 892..1797 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:24 Download gff for
BO07660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-PA | 892..1797 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:07 Download gff for
BO07660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 1117..2024 | 13..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:46 Download gff for
BO07660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 1117..2024 | 13..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:46 Download gff for
BO07660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16272707..16273614 | 13..921 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:07 Download gff for
BO07660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16166740..16167647 | 13..921 | 99 | | Minus |
BO07660.5prime Sequence
941 bp (864 high quality bases) assembled on 2006-01-06
> BO07660.5prime
GAAGTTATCAGTCGACATGTCCTCATCCGATGGAAAACTTCGTTACGATG
GCCGTGTGGCGGTGGTGACGGGAGCTGGTGCCGGTTTGGGCCGCGAGTAC
GCACTGCTCTTCGCGGAGCGTGGCGCCAAGGTGGTGGTCAACGATCTGGG
TGGCACCCACTCCGGCGATGGAGCATCGCAGCGGGCCGCCGACATTGTGG
TGGATGAGATCCGTAAGGCCGGCGGCGAGGCGGTGGCCGACTACAACTCG
GTAATCGATGGGGCAAAGGTCATCGAGACGGCCATCAAAGCTTTCGGACG
CGTCGATATCCTGGTCAACAATGCCGGCATTCTACGCGACAGGAGTCTGG
TGAAGACCAGCGAACAGGACTGGAATCTGGTCAACGATGTCCATCTGAAG
GGCAGCTTTAAGTGCACCCAGGCGGCATTCCCGTACATGAAGAAGCAGAA
CTATGGCCGCATCATCATGACATCGTCCAACTCGGGCATCTATGGTAATT
TCGGGCAGGTCAACTACACTGCCGCCAAGATGGGCCTCATCGGATTGGCC
AACACGGTTGCCATCGAGGGAGCCCGCAACAATGTTCTTTGCAACGTCAT
CGTGCCAACTGCCGCCAGTCGAATGACCGAGGGCATTCTGCCCGACATTC
TCTTCAACGAGCTGAAGCCCAAGCTGATTGCTCCCGTAGTGGCCTACTTG
TGCCACGAGTCCTGCGAGGATAATGGTAGCTATATCGAGAGTGCCGCCGG
CTGGGCCACCAAGCTGCACATGGTTCGCGGCAAGGGCGCTGTGCTGCGTC
CTTCGCTGGACGACCCCGTGACCATTGAGTACGTCAAGGATGTGTGGTCG
AATGTGACCGACATGTCCAAGGCCAAGCACTTGGGTGCCATCGCAGAGGC
CTCCGGCACCCTGCTGGAAGTGCTTGAGAAGCTCAAGGAAG
BO07660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3415-PA | 1797 | CG3415-RA | 1..925 | 17..941 | 4625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfe2-RB | 2116 | CG3415-RB | 116..1041 | 16..941 | 4630 | 100 | Plus |
| Mfe2-RA | 2225 | CG3415-RA | 225..1150 | 16..941 | 4630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16271519..16272231 | 16..728 | 3565 | 100 | Plus |
| X | 23542271 | X | 16272524..16272740 | 725..941 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:14:21 has no hits.
BO07660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:32 Download gff for
BO07660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-PA | 1..925 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:25 Download gff for
BO07660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-PA | 1..925 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:48 Download gff for
BO07660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 220..1150 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:18 Download gff for
BO07660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 220..1150 | 9..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:18 Download gff for
BO07660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16271513..16272228 | 11..725 | 99 | -> | Plus |
| X | 16272525..16272740 | 726..941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:48 Download gff for
BO07660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16165546..16166261 | 11..725 | 99 | -> | Plus |
| arm_X | 16166558..16166773 | 726..941 | 100 | | Plus |
BO07660.complete Sequence
1828 bp (1828 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630882
> BO07660.complete
GAAGTTATCAGTCGACATGTCCTCATCCGATGGAAAACTTCGTTACGATG
GCCGTGTGGCGGTGGTGACGGGAGCTGGTGCCGGTTTGGGCCGCGAGTAC
GCACTGCTCTTCGCGGAGCGTGGCGCCAAGGTGGTGGTCAACGATCTGGG
TGGCACCCACTCCGGCGATGGAGCATCGCAGCGGGCCGCCGACATTGTGG
TGGATGAGATCCGTAAGGCCGGCGGCGAGGCGGTGGCCGACTACAACTCG
GTAATCGATGGGGCAAAGGTCATCGAGACGGCCATCAAAGCTTTCGGACG
CGTCGATATCCTGGTCAACAATGCCGGCATTCTACGCGACAGGAGTCTGG
TGAAGACCAGCGAACAGGACTGGAATCTGGTCAACGATGTCCATCTGAAG
GGCAGCTTTAAGTGCACCCAGGCGGCATTCCCGTACATGAAGAAGCAGAA
CTATGGCCGCATCATCATGACATCGTCCAACTCGGGCATCTATGGTAATT
TCGGGCAGGTCAACTACACTGCCGCCAAGATGGGCCTCATCGGATTGGCC
AACACGGTTGCCATCGAGGGAGCCCGCAACAATGTTCTTTGCAACGTCAT
CGTGCCAACTGCCGCCAGTCGAATGACCGAGGGCATTCTGCCCGACATTC
TCTTCAACGAGCTGAAGCCCAAGCTGATTGCTCCCGTAGTGGCCTACTTG
TGCCACGAGTCCTGCGAGGATAATGGTAGCTATATCGAGAGTGCCGCCGG
CTGGGCCACCAAGCTGCACATGGTTCGCGGCAAGGGCGCTGTGCTGCGTC
CTTCGCTGGACGACCCCGTGACCATTGAGTACGTCAAGGATGTGTGGTCG
AATGTGACCGACATGTCCAAGGCCAAGCACTTGGGTGCCATCGCAGAGGC
CTCCGGCACCCTGCTGGAAGTGCTTGAGAAGCTCAAGGAAGGCGGCGGCG
ACGCCATCGAGGATGCCTTCGAGTTCAATAGCAAAGAGCTTATTACCTAC
GCCCTGGGCATTGGGGCATCCGTCAAAAACGCGAAGGACATGCGCTTCCT
GTACGAAAACGATGCCGATTTCGCCGCCATTCCAACTTTCTTCGTTCTGC
CCGGCCTTCTGCTGCAAATGTCCACCGACAAGCTGCTCAGCAAGGCTTTG
CCCAACAGCCAAGTGGACTTCAGCAACATTCTGCACGGCGAACAGTACCT
AGAGATCGTTGACGATCTGCCCACCAGTGGCACTTTGCTGACCAACGGCA
AGGTCTTCGATGTTATGGACAAGGGATCCGGCGCCGTGGTCGTCACCAAT
AGCGAGTCGTTCGACGAAAGTGGCCGCCTGTTGGTGCGCAACCAGAGCAC
CACTTTCATTGTCGGCGCTGGCAAATTCGGAGGCAAGAAGGATCCCATCG
CTGGTGTAGTTCCGCTGCAGCCGGCGCCCAATCGCCAACCGGACGCAACC
GTCCAGTATACGACCAGCGAGGACCAGGCGGCGCTGTACCGTCTGTCCGG
CGACAAGAACCCCCTGCATATCGATCCCCAGATGGCCCTGCTGGCCGGCT
TCAAGACACCCATCCTCCATGGACTCTGCACACTGGGCTTCTCGGTGCGC
GCCGTGCTCGCTCAGTTTGCGGACAACAACCCGGCTCTGTTCAAGGCTGT
CAAAGTGCGCTTCTCCGGACCCGTAATTCCGGGCCAGACTTTGCGCGTGG
ACTTGTGGAAGCAGGGCACACGCATCAACTTCCGCACCGTGGTCGTGGAG
ACCGGCAAGGAGGTCATATCCGGCGCCTATGTCGACCTGAAGAGCTCACA
GGCCAAGCTGGCAAGCTTTCTAGACCAT
BO07660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfe2-RB | 1797 | CG3415-PB | 1..1794 | 17..1810 | 8970 | 100 | Plus |
| Mfe2-RA | 1797 | CG3415-PA | 1..1794 | 17..1810 | 8970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfe2-RB | 2116 | CG3415-RB | 116..1910 | 16..1810 | 8975 | 100 | Plus |
| Mfe2-RA | 2225 | CG3415-RA | 225..2019 | 16..1810 | 8975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16272524..16273609 | 725..1810 | 5430 | 100 | Plus |
| X | 23542271 | X | 16271519..16272231 | 16..728 | 3565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:04:22 has no hits.
BO07660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:38 Download gff for
BO07660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-RA | 1..1797 | 17..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:29 Download gff for
BO07660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-RA | 197..2001 | 9..1816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:11 Download gff for
BO07660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 226..2019 | 17..1812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:39 Download gff for
BO07660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-RA | 197..2001 | 9..1816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:49 Download gff for
BO07660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 226..2019 | 17..1812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:49 Download gff for
BO07660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16271520..16272228 | 17..725 | 100 | -> | Plus |
| X | 16272525..16273609 | 726..1812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:11 Download gff for
BO07660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16165553..16166261 | 17..725 | 100 | -> | Plus |
| arm_X | 16166558..16167642 | 726..1812 | 99 | | Plus |
BO07660.pep Sequence
Translation from 16 to 1828
> BO07660.pep
MSSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSG
DGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAIKAFGRVDILV
NNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRII
MTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA
SRMTEGILPDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAAGWATKL
HMVRGKGAVLRPSLDDPVTIEYVKDVWSNVTDMSKAKHLGAIAEASGTLL
EVLEKLKEGGGDAIEDAFEFNSKELITYALGIGASVKNAKDMRFLYENDA
DFAAIPTFFVLPGLLLQMSTDKLLSKALPNSQVDFSNILHGEQYLEIVDD
LPTSGTLLTNGKVFDVMDKGSGAVVVTNSESFDESGRLLVRNQSTTFIVG
AGKFGGKKDPIAGVVPLQPAPNRQPDATVQYTTSEDQAALYRLSGDKNPL
HIDPQMALLAGFKTPILHGLCTLGFSVRAVLAQFADNNPALFKAVKVRFS
GPVIPGQTLRVDLWKQGTRINFRTVVVETGKEVISGAYVDLKSSQAKLAS
FLDH
BO07660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfe2-PB | 598 | CG3415-PB | 1..598 | 1..598 | 3038 | 100 | Plus |
| Mfe2-PA | 598 | CG3415-PA | 1..598 | 1..598 | 3038 | 100 | Plus |
| CG3603-PB | 249 | CG3603-PB | 8..247 | 12..245 | 254 | 33.3 | Plus |
| CG3603-PA | 249 | CG3603-PA | 8..247 | 12..245 | 254 | 33.3 | Plus |
| CG5590-PA | 412 | CG5590-PA | 5..243 | 6..239 | 220 | 31.2 | Plus |
