Clone Sequence Records
BO07661.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-01-06
> BO07661.5prime
GAAGTTATCAGTCGACATGGCGTTAAAAAGAATCAATAAGGAACTGCAAG
ATCTGGGCAGAGATCCACCTGCACAATGTTCAGCCGGTCCAGTTGGAGAT
GATTTATTTCACTGGCAAGCTACAATAATGGGCCCGCCGGACAGCCCTTA
TCAAGGAGGTGTATTCTTCTTAACTATACATTTTCCAACAGACTATCCCT
TTAAACCACCCAAAGTGGCTTTTACAACGCGCATATACCATCCAAACATC
AACAGCAATGGATCGATTTGTCTCGATATATTAAGATCTCAGTGGTCGCC
AGCATTAACTATTTCAAAAGTTTTATTATCAATTTGCTCTCTACTCTGTG
ATCCCAATCCAGACGATCCTCTTGTTCCAGAGATTGCCAGAATATATAAA
ACCGATCGGGAAAAATACAATGAGCTGGCACGAGAGTGGACTAGAAAGTA
TGCTATGGCAAGCTTTCTAGACC
BO07661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7425-PA | 444 | eff-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 1913 | CG7425-RC | 389..829 | 17..457 | 2205 | 100 | Plus |
eff-RB | 1622 | CG7425-RB | 389..829 | 17..457 | 2205 | 100 | Plus |
eff-RA | 2084 | CG7425-RA | 851..1291 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14733700..14733884 | 320..136 | 925 | 100 | Minus |
3R | 32079331 | 3R | 14733498..14733636 | 457..319 | 695 | 100 | Minus |
3R | 32079331 | 3R | 14737420..14737485 | 104..39 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:41:26 has no hits.
BO07661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:35 Download gff for
BO07661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:28 Download gff for
BO07661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7425-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:12 Download gff for
BO07661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1301 | 7..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:04 Download gff for
BO07661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1301 | 7..467 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:04 Download gff for
BO07661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14737420..14737483 | 41..104 | 100 | <- | Minus |
3R | 14733488..14733634 | 321..467 | 97 | <- | Minus |
3R | 14733700..14733883 | 137..320 | 100 | <- | Minus |
3R | 14734387..14734418 | 105..136 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:12 Download gff for
BO07661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10563142..10563205 | 41..104 | 100 | <- | Minus |
arm_3R | 10559210..10559356 | 321..467 | 97 | <- | Minus |
arm_3R | 10559422..10559605 | 137..320 | 100 | <- | Minus |
arm_3R | 10560109..10560140 | 105..136 | 100 | <- | Minus |
BO07661.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-01-06
> BO07661.3prime
ATGGTCTAGAAAGCTTGCCATAGCATACTTTCTAGTCCACTCTCGTGCCA
GCTCATTGTATTTTTCCCGATCGGTTTTATATATTCTGGCAATCTCTGGA
ACAAGAGGATCGTCTGGATTGGGATCACAGAGTAGAGAGCAAATTGATAA
TAAAACTTTTGAAATAGTTAATGCTGGCGACCACTGAGATCTTAATATAT
CGAGACAAATCGATCCATTGCTGTTGATGTTTGGATGGTATATGCGCGTT
GTAAAAGCCACTTTGGGTGGTTTAAAGGGATAGTCTGTTGGAAAATGTAT
AGTTAAGAAGAATACACCTCCTTGATAAGGGCTGTCCGGCGGGCCCATTA
TTGTAGCTTGCCAGTGAAATAAATCATCTCCAACTGGACCGGCTGAACAT
TGTGCAGGTGGATCTCTGCCCAGATCTTGCAGTTCCTTATTGATTCTTTT
TAACGCCATGTCGACTGATAACT
BO07661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7425-PA | 444 | eff-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 1913 | CG7425-RC | 389..829 | 459..19 | 2205 | 100 | Minus |
eff-RB | 1622 | CG7425-RB | 389..829 | 459..19 | 2205 | 100 | Minus |
eff-RA | 2084 | CG7425-RA | 851..1291 | 459..19 | 2205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14733700..14733884 | 156..340 | 925 | 100 | Plus |
3R | 32079331 | 3R | 14733498..14733636 | 19..157 | 695 | 100 | Plus |
3R | 32079331 | 3R | 14737420..14737485 | 372..437 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:53:20 has no hits.
BO07661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:33 Download gff for
BO07661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:26 Download gff for
BO07661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7425-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:03 Download gff for
BO07661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1301 | 9..469 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:48 Download gff for
BO07661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 843..1301 | 9..469 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:48 Download gff for
BO07661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14733488..14733634 | 9..155 | 97 | <- | Plus |
3R | 14733700..14733883 | 156..339 | 100 | <- | Plus |
3R | 14734387..14734418 | 340..371 | 100 | <- | Plus |
3R | 14737420..14737483 | 372..435 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:03 Download gff for
BO07661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10559210..10559356 | 9..155 | 97 | <- | Plus |
arm_3R | 10559422..10559605 | 156..339 | 100 | <- | Plus |
arm_3R | 10560109..10560140 | 340..371 | 100 | <- | Plus |
arm_3R | 10563142..10563205 | 372..435 | 100 | <- | Plus |
BO07661.complete Sequence
475 bp (475 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630883
> BO07661.complete
GAAGTTATCAGTCGACATGGCGTTAAAAAGAATCAATAAGGAACTGCAAG
ATCTGGGCAGAGATCCACCTGCACAATGTTCAGCCGGTCCAGTTGGAGAT
GATTTATTTCACTGGCAAGCTACAATAATGGGCCCGCCGGACAGCCCTTA
TCAAGGAGGTGTATTCTTCTTAACTATACATTTTCCAACAGACTATCCCT
TTAAACCACCCAAAGTGGCTTTTACAACGCGCATATACCATCCAAACATC
AACAGCAATGGATCGATTTGTCTCGATATATTAAGATCTCAGTGGTCGCC
AGCATTAACTATTTCAAAAGTTTTATTATCAATTTGCTCTCTACTCTGTG
ATCCCAATCCAGACGATCCTCTTGTTCCAGAGATTGCCAGAATATATAAA
ACCGATCGGGAAAAATACAATGAGCTGGCACGAGAGTGGACTAGAAAGTA
TGCTATGGCAAGCTTTCTAGACCAT
BO07661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 444 | CG7425-PC | 1..441 | 17..457 | 2205 | 100 | Plus |
eff-RB | 444 | CG7425-PB | 1..441 | 17..457 | 2205 | 100 | Plus |
eff-RA | 444 | CG7425-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-RC | 1913 | CG7425-RC | 389..829 | 17..457 | 2205 | 100 | Plus |
eff-RB | 1622 | CG7425-RB | 389..829 | 17..457 | 2205 | 100 | Plus |
eff-RA | 2084 | CG7425-RA | 851..1291 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14733700..14733884 | 320..136 | 925 | 100 | Minus |
3R | 32079331 | 3R | 14733498..14733636 | 457..319 | 695 | 100 | Minus |
3R | 32079331 | 3R | 14737420..14737485 | 104..39 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:14:14 has no hits.
BO07661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:42 Download gff for
BO07661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:59 Download gff for
BO07661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 735..1193 | 7..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:21 Download gff for
BO07661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 851..1291 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:42 Download gff for
BO07661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 735..1193 | 7..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:24 Download gff for
BO07661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eff-RA | 851..1291 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:24 Download gff for
BO07661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14733495..14733634 | 321..459 | 98 | <- | Minus |
3R | 14733700..14733883 | 137..320 | 100 | <- | Minus |
3R | 14734387..14734418 | 105..136 | 100 | <- | Minus |
3R | 14737420..14737483 | 41..104 | 100 | <- | Minus |
3R | 14740380..14740403 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:21 Download gff for
BO07661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10560109..10560140 | 105..136 | 100 | <- | Minus |
arm_3R | 10563142..10563205 | 41..104 | 100 | <- | Minus |
arm_3R | 10566102..10566125 | 17..40 | 100 | | Minus |
arm_3R | 10559217..10559356 | 321..459 | 98 | <- | Minus |
arm_3R | 10559422..10559605 | 137..320 | 100 | <- | Minus |
BO07661.pep Sequence
Translation from 16 to 475
> BO07661.pep
MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVF
FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTIS
KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAMASF
LDH
BO07661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eff-PC | 147 | CG7425-PC | 1..147 | 1..147 | 804 | 100 | Plus |
eff-PB | 147 | CG7425-PB | 1..147 | 1..147 | 804 | 100 | Plus |
eff-PA | 147 | CG7425-PA | 1..147 | 1..147 | 804 | 100 | Plus |
Ubc2-PD | 232 | CG6720-PD | 89..231 | 4..146 | 513 | 66.4 | Plus |
Ubc2-PC | 232 | CG6720-PC | 89..231 | 4..146 | 513 | 66.4 | Plus |