Clone Sequence Records
BO07663.3prime Sequence
920 bp (864 high quality bases) assembled on 2006-01-06
> BO07663.3prime
ATGGTCTAGAAAGCTTGCCTCAATGTAGATGTCCTCGATGGGATAAGCGG
TTTCAATGAATTTCTGATAGAATCGCTGGAAAGCACGGCCCACTGCCTCG
GCCACCGGTCTGGTCGACTCCGAGCCCTTGAAGACGTGGCAGGCGAACCG
CTGAACCGTGGGATGTTTGGTGATGAAGCCAATGAAGCGGTGATCGCGAG
GGTGAAATGCGCAGAAGGAGACGTTCTTCAGGGAGTAGAAGTAGTCGATG
CAAGGTTTCTTGTCCTTTTTGTTTTGATTCGGGCCCGATCGATCCACCAT
GCGAAGTCCCTGGTCGGAAACCTCCAGGATGCACGTCTGTCCGGTCGGTG
AGTTGCCGTACTCCCCGACAATCTTGCGCACCGCCTGGCAAACGACTCCG
GTGCCCTTGTGCGCCAGCGTCTCCACGGATCCGAGGTAGCCCAGCAGATA
GCGCTCCTTCTTCACCAGCTGCACTGTGGGATCGAACTCGTTGTAGTCCA
GGTCCACGGCGTAGGCCGAGGGGAAGATGCCCTGCCTTCCGGTGCGGAGA
TTCACACCCTCGCACCACAGGTCCTCGGCCTCCTTTTGCACGTAGATGGC
GTCGCCGATCTCCAGCTCGATCTCGTCGTGGTGCCGCGGCACAAACTTGT
GCAGACCACGGTGAGTGGCCTCCAGCATCTCCAGCTGGCCAAAGGGCACG
CCCCCAAAGGGAGGCGGAAAGGGGGACTGCGAAACGGGAGACGTGATCTG
CGGCGACATGCTCTTAAAGTCGTTGGGCGAATGCGCCGTGCTGTGACCAC
TGTCCACGTCGCCCAGACTCTGCATCCTTTCCGAATCCGGACTGGAGTCC
TCGTCCATCAAGTAGCCGCATTTGAGGGACAGAAATGAGCGCTGTTGTTC
ACTGCGAACTGCTGGAGGGA
BO07663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1200-PA | 1452 | Aplip1-RA | 548..1449 | 920..19 | 4485 | 99.8 | Minus |
CG1200-PB | 1473 | Aplip1-RB | 569..1470 | 920..19 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 2411 | CG1200-RB | 795..1696 | 920..19 | 4495 | 99.9 | Minus |
Aplip1-RA | 2390 | CG1200-RA | 774..1675 | 920..19 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197587..1198230 | 920..277 | 3205 | 99.8 | Minus |
3L | 28110227 | 3L | 1198299..1198486 | 276..89 | 940 | 100 | Minus |
3L | 28110227 | 3L | 1198554..1198624 | 89..19 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:55:35 has no hits.
BO07663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:38 Download gff for
BO07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PA | 549..1452 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:32 Download gff for
BO07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PB | 570..1473 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:55 Download gff for
BO07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 775..1687 | 6..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:02 Download gff for
BO07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 775..1687 | 6..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:02 Download gff for
BO07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1197588..1198230 | 277..919 | 99 | -> | Minus |
3L | 1198299..1198486 | 89..276 | 100 | -> | Minus |
3L | 1198555..1198636 | 6..88 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:55 Download gff for
BO07663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1197588..1198230 | 277..919 | 99 | -> | Minus |
arm_3L | 1198299..1198486 | 89..276 | 100 | -> | Minus |
arm_3L | 1198555..1198636 | 6..88 | 93 | | Minus |
BO07663.5prime Sequence
904 bp (799 high quality bases) assembled on 2006-01-06
> BO07663.5prime
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGAC
BO07663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1200-PB | 1473 | Aplip1-RB | 1..888 | 17..904 | 4440 | 100 | Plus |
CG1200-PA | 1452 | Aplip1-RA | 1..490 | 17..506 | 2450 | 100 | Plus |
CG1200-PA | 1452 | Aplip1-RA | 491..867 | 528..904 | 1885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 2411 | CG1200-RB | 223..1114 | 13..904 | 4460 | 100 | Plus |
Aplip1-RA | 2390 | CG1200-RA | 223..1093 | 13..904 | 4135 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197509..1197906 | 507..904 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 1196937..1197313 | 130..506 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 1196539..1196655 | 13..129 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:31:27 has no hits.
BO07663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:38 Download gff for
BO07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PB | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:33 Download gff for
BO07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PB | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:07 Download gff for
BO07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 219..1114 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:33 Download gff for
BO07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 219..1114 | 9..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:33 Download gff for
BO07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1196535..1196655 | 9..129 | 98 | -> | Plus |
3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
3L | 1197509..1197906 | 507..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:07 Download gff for
BO07663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1196535..1196655 | 9..129 | 98 | -> | Plus |
arm_3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
arm_3L | 1197509..1197906 | 507..904 | 100 | | Plus |
BO07663.complete Sequence
1504 bp (1504 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630884
> BO07663.complete
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGACGCCATCTACGTGCAAAAGGAGGCCGAGGACCTGTGGTGCGAGGGTG
TGAATCTCCGCACCGGAAGGCAGGGCATCTTCCCCTCGGCCTACGCCGTG
GACCTGGACTACAACGAGTTCGATCCCACAGTGCAGCTGGTGAAGAAGGA
GCGCTATCTGCTGGGCTACCTCGGATCCGTGGAGACGCTGGCGCACAAGG
GCACCGGAGTCGTTTGCCAGGCGGTGCGCAAGATTGTCGGGGAGTACGGC
AACTCACCGACCGGACAGACGTGCATCCTGGAGGTTTCCGACCAGGGACT
TCGCATGGTGGATCGATCGGGCCCGAATCAAAACAAAAAGGACAAGAAAC
CTTGCATCGACTACTTCTACTCCCTGAAGAACGTCTCCTTCTGCGCATTT
CACCCTCGCGATCACCGCTTCATTGGCTTCATCACCAAACATCCCACGGT
TCAGCGGTTCGCCTGCCACGTCTTCAAGGGCTCGGAGTCGACCAGACCGG
TGGCCGAGGCAGTGGGCCGTGCTTTCCAGCGATTCTATCAGAAATTCATT
GAAACCGCTTATCCCATCGAGGACATCTACATTGAGGCAAGCTTTCTAGA
CCAT
BO07663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 1473 | CG1200-PB | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Aplip1-RA | 1452 | CG1200-PA | 1..1449 | 17..1486 | 7000 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 2411 | CG1200-RB | 223..1696 | 13..1486 | 7370 | 100 | Plus |
Aplip1-RA | 2390 | CG1200-RA | 223..1675 | 13..1486 | 7020 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197509..1198230 | 507..1228 | 3610 | 100 | Plus |
3L | 28110227 | 3L | 1196937..1197313 | 130..506 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 1198299..1198486 | 1229..1416 | 940 | 100 | Plus |
3L | 28110227 | 3L | 1196539..1196655 | 13..129 | 585 | 100 | Plus |
3L | 28110227 | 3L | 1198554..1198624 | 1416..1486 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:32:45 has no hits.
BO07663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:27 Download gff for
BO07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 1..1473 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:14 Download gff for
BO07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 215..1704 | 9..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:59 Download gff for
BO07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 227..1696 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:27 Download gff for
BO07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 215..1704 | 9..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:29 Download gff for
BO07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 227..1696 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:29 Download gff for
BO07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
3L | 1197509..1198230 | 507..1228 | 100 | -> | Plus |
3L | 1198299..1198486 | 1229..1416 | 100 | -> | Plus |
3L | 1198555..1198624 | 1417..1488 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:59 Download gff for
BO07663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
arm_3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
arm_3L | 1197509..1198230 | 507..1228 | 100 | -> | Plus |
arm_3L | 1198299..1198486 | 1229..1416 | 100 | -> | Plus |
arm_3L | 1198555..1198624 | 1417..1488 | 97 | | Plus |
BO07663.pep Sequence
Translation from 16 to 1504
> BO07663.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKSSILHLLGGSNFGSLADEFRNGGGGGIPPAVRSGQQR
SFLSLKCGYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITS
PVSQSPFPPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYV
QKEAEDLWCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLG
YLGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDR
SGPNQNKKDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFAC
HVFKGSESTRPVAEAVGRAFQRFYQKFIETAYPIEDIYIEASFLDH
BO07663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-PB | 490 | CG1200-PB | 1..490 | 1..490 | 2611 | 100 | Plus |
Aplip1-PA | 483 | CG1200-PA | 1..483 | 1..490 | 2554 | 98.4 | Plus |