Clone BO07663 Report

Search the DGRC for BO07663

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptAplip1-RB
Protein status:BO07663.pep: validated full length
Sequenced Size:1504

Clone Sequence Records

BO07663.3prime Sequence

920 bp (864 high quality bases) assembled on 2006-01-06

> BO07663.3prime
ATGGTCTAGAAAGCTTGCCTCAATGTAGATGTCCTCGATGGGATAAGCGG
TTTCAATGAATTTCTGATAGAATCGCTGGAAAGCACGGCCCACTGCCTCG
GCCACCGGTCTGGTCGACTCCGAGCCCTTGAAGACGTGGCAGGCGAACCG
CTGAACCGTGGGATGTTTGGTGATGAAGCCAATGAAGCGGTGATCGCGAG
GGTGAAATGCGCAGAAGGAGACGTTCTTCAGGGAGTAGAAGTAGTCGATG
CAAGGTTTCTTGTCCTTTTTGTTTTGATTCGGGCCCGATCGATCCACCAT
GCGAAGTCCCTGGTCGGAAACCTCCAGGATGCACGTCTGTCCGGTCGGTG
AGTTGCCGTACTCCCCGACAATCTTGCGCACCGCCTGGCAAACGACTCCG
GTGCCCTTGTGCGCCAGCGTCTCCACGGATCCGAGGTAGCCCAGCAGATA
GCGCTCCTTCTTCACCAGCTGCACTGTGGGATCGAACTCGTTGTAGTCCA
GGTCCACGGCGTAGGCCGAGGGGAAGATGCCCTGCCTTCCGGTGCGGAGA
TTCACACCCTCGCACCACAGGTCCTCGGCCTCCTTTTGCACGTAGATGGC
GTCGCCGATCTCCAGCTCGATCTCGTCGTGGTGCCGCGGCACAAACTTGT
GCAGACCACGGTGAGTGGCCTCCAGCATCTCCAGCTGGCCAAAGGGCACG
CCCCCAAAGGGAGGCGGAAAGGGGGACTGCGAAACGGGAGACGTGATCTG
CGGCGACATGCTCTTAAAGTCGTTGGGCGAATGCGCCGTGCTGTGACCAC
TGTCCACGTCGCCCAGACTCTGCATCCTTTCCGAATCCGGACTGGAGTCC
TCGTCCATCAAGTAGCCGCATTTGAGGGACAGAAATGAGCGCTGTTGTTC
ACTGCGAACTGCTGGAGGGA

BO07663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1200-PA 1452 Aplip1-RA 548..1449 920..19 4485 99.8 Minus
CG1200-PB 1473 Aplip1-RB 569..1470 920..19 4485 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2411 CG1200-RB 795..1696 920..19 4495 99.9 Minus
Aplip1-RA 2390 CG1200-RA 774..1675 920..19 4495 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197587..1198230 920..277 3205 99.8 Minus
3L 28110227 3L 1198299..1198486 276..89 940 100 Minus
3L 28110227 3L 1198554..1198624 89..19 355 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:55:35 has no hits.

BO07663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:38 Download gff for BO07663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PA 549..1452 18..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:32 Download gff for BO07663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PB 570..1473 18..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:55 Download gff for BO07663.3prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 775..1687 6..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:02 Download gff for BO07663.3prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 775..1687 6..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:02 Download gff for BO07663.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1197588..1198230 277..919 99 -> Minus
3L 1198299..1198486 89..276 100 -> Minus
3L 1198555..1198636 6..88 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:55 Download gff for BO07663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1197588..1198230 277..919 99 -> Minus
arm_3L 1198299..1198486 89..276 100 -> Minus
arm_3L 1198555..1198636 6..88 93   Minus

BO07663.5prime Sequence

904 bp (799 high quality bases) assembled on 2006-01-06

> BO07663.5prime
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGAC

BO07663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1200-PB 1473 Aplip1-RB 1..888 17..904 4440 100 Plus
CG1200-PA 1452 Aplip1-RA 1..490 17..506 2450 100 Plus
CG1200-PA 1452 Aplip1-RA 491..867 528..904 1885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2411 CG1200-RB 223..1114 13..904 4460 100 Plus
Aplip1-RA 2390 CG1200-RA 223..1093 13..904 4135 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197509..1197906 507..904 1990 100 Plus
3L 28110227 3L 1196937..1197313 130..506 1885 100 Plus
3L 28110227 3L 1196539..1196655 13..129 585 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:31:27 has no hits.

BO07663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:38 Download gff for BO07663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PB 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:33 Download gff for BO07663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PB 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:07 Download gff for BO07663.5prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 219..1114 9..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:33 Download gff for BO07663.5prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 219..1114 9..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:33 Download gff for BO07663.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1196535..1196655 9..129 98 -> Plus
3L 1196937..1197313 130..506 100 -> Plus
3L 1197509..1197906 507..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:07 Download gff for BO07663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196535..1196655 9..129 98 -> Plus
arm_3L 1196937..1197313 130..506 100 -> Plus
arm_3L 1197509..1197906 507..904 100   Plus

BO07663.complete Sequence

1504 bp (1504 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630884

> BO07663.complete
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGACGCCATCTACGTGCAAAAGGAGGCCGAGGACCTGTGGTGCGAGGGTG
TGAATCTCCGCACCGGAAGGCAGGGCATCTTCCCCTCGGCCTACGCCGTG
GACCTGGACTACAACGAGTTCGATCCCACAGTGCAGCTGGTGAAGAAGGA
GCGCTATCTGCTGGGCTACCTCGGATCCGTGGAGACGCTGGCGCACAAGG
GCACCGGAGTCGTTTGCCAGGCGGTGCGCAAGATTGTCGGGGAGTACGGC
AACTCACCGACCGGACAGACGTGCATCCTGGAGGTTTCCGACCAGGGACT
TCGCATGGTGGATCGATCGGGCCCGAATCAAAACAAAAAGGACAAGAAAC
CTTGCATCGACTACTTCTACTCCCTGAAGAACGTCTCCTTCTGCGCATTT
CACCCTCGCGATCACCGCTTCATTGGCTTCATCACCAAACATCCCACGGT
TCAGCGGTTCGCCTGCCACGTCTTCAAGGGCTCGGAGTCGACCAGACCGG
TGGCCGAGGCAGTGGGCCGTGCTTTCCAGCGATTCTATCAGAAATTCATT
GAAACCGCTTATCCCATCGAGGACATCTACATTGAGGCAAGCTTTCTAGA
CCAT

BO07663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 1473 CG1200-PB 1..1470 17..1486 7350 100 Plus
Aplip1-RA 1452 CG1200-PA 1..1449 17..1486 7000 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2411 CG1200-RB 223..1696 13..1486 7370 100 Plus
Aplip1-RA 2390 CG1200-RA 223..1675 13..1486 7020 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197509..1198230 507..1228 3610 100 Plus
3L 28110227 3L 1196937..1197313 130..506 1885 100 Plus
3L 28110227 3L 1198299..1198486 1229..1416 940 100 Plus
3L 28110227 3L 1196539..1196655 13..129 585 100 Plus
3L 28110227 3L 1198554..1198624 1416..1486 355 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:32:45 has no hits.

BO07663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:27 Download gff for BO07663.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 1..1473 17..1487 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:14 Download gff for BO07663.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 215..1704 9..1499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:59 Download gff for BO07663.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 227..1696 17..1488 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:27 Download gff for BO07663.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 215..1704 9..1499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:29 Download gff for BO07663.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 227..1696 17..1488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:29 Download gff for BO07663.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196543..1196655 17..129 100 -> Plus
3L 1196937..1197313 130..506 100 -> Plus
3L 1197509..1198230 507..1228 100 -> Plus
3L 1198299..1198486 1229..1416 100 -> Plus
3L 1198555..1198624 1417..1488 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:59 Download gff for BO07663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196543..1196655 17..129 100 -> Plus
arm_3L 1196937..1197313 130..506 100 -> Plus
arm_3L 1197509..1198230 507..1228 100 -> Plus
arm_3L 1198299..1198486 1229..1416 100 -> Plus
arm_3L 1198555..1198624 1417..1488 97   Plus

BO07663.pep Sequence

Translation from 16 to 1504

> BO07663.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKSSILHLLGGSNFGSLADEFRNGGGGGIPPAVRSGQQR
SFLSLKCGYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITS
PVSQSPFPPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYV
QKEAEDLWCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLG
YLGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDR
SGPNQNKKDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFAC
HVFKGSESTRPVAEAVGRAFQRFYQKFIETAYPIEDIYIEASFLDH

BO07663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-PB 490 CG1200-PB 1..490 1..490 2611 100 Plus
Aplip1-PA 483 CG1200-PA 1..483 1..490 2554 98.4 Plus