Clone Sequence Records
BO07664.3prime Sequence
923 bp (817 high quality bases) assembled on 2006-01-06
> BO07664.3prime
ATGGTCTAGAAAGCTTGCGCGATTCCGCTTGGTCTTGCGACTCACATTGC
CCTCGATGATAATCTGAAGGATCTGGCTGGCCTCGAAAGCGGTGCCCGGC
AGCAGGATCACCGGCGATGTCACATTGCCCGCCTCCACGCACAACATGTT
GGGGAACTCGTCGTCCCCGAAGTCACTCATCTCACGCGATCGATCGATCC
AAGGATTCCAGATGACCGTATCGGGAAAATTGTACTTGTGCAGTCTCATC
TTCCTGCCGGACACCACGTTTGTGATGACGTGCTCCTGCGGCGTGTGCTG
GTAGATCCTGTCGGTCCACTCATTGACGGTGACCACCTCGCGTCCCTCCT
GATAGAGCGCATTCTCCCGCGTCTTGTCGATGAAGTGACAGCCCTGGAGG
CCGGTGATCTGACATCGGCGCACATCGGGCACCTTTAGGTAGGTGTGCAG
CAGCATGTTGAAGGTGAAGCTCAGCTCCTTGCTGGGATTGTAGACGCCGA
TGTGGAAGTGCAGCTCCTTTTCGCGCAGGATCAGCCTATAAGTGATGCGA
AACTGATAATTCCATATGGATCGCGTAAAATCGTTGTCCATCAGCGAAAA
TATGGCCTCCACATCGCCATTGTGAAGCCTGTCTGGCGGTCTCTCCAGGT
GCCACCTGGTAATCCTCGCAAATCCATGCTGCGGCCCAAAGGACCACGCA
CCGAACTGAGGGAAGACAAAGGGAATCCCACCGCGTATCGCCTTCTTGCC
ATCGAATGAGGCTAGTTTGCTGACAAACAACTGCTCCTGATTGTTTACCC
GCCAGGACACGACCGTCGCACCGTGCAAGTTGATGGTGCANGTTGTATTG
TTTCCGCGATCCAGAACAACTACACTCGTTGCGGCCATTGCGGGCGCTGT
CGTGGGCATGTCGACTGATAACT
BO07664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-PA | 894 | CG9008-RA | 5..891 | 905..19 | 4391 | 99.7 | Minus |
CG9008-PB | 576 | CG9008-RB | 1..573 | 591..19 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 1987 | CG9008-RA | 434..1324 | 909..19 | 4414 | 99.7 | Minus |
CG9008-RE | 2194 | CG9008-RE | 434..1279 | 909..64 | 4189 | 99.6 | Minus |
CG9008-RD | 2125 | CG9008-RD | 434..1279 | 909..64 | 4189 | 99.6 | Minus |
CG9008-RE | 2194 | CG9008-RE | 1483..1531 | 67..19 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13775471..13775808 | 216..553 | 1690 | 100 | Plus |
2L | 23513712 | 2L | 13775876..13776034 | 552..710 | 795 | 100 | Plus |
2L | 23513712 | 2L | 13775255..13775407 | 64..216 | 765 | 100 | Plus |
2L | 23513712 | 2L | 13779642..13779732 | 819..909 | 414 | 96.7 | Plus |
2L | 23513712 | 2L | 13776098..13776159 | 711..772 | 310 | 100 | Plus |
2L | 23513712 | 2L | 13777771..13777823 | 770..822 | 265 | 100 | Plus |
2L | 23513712 | 2L | 13775003..13775051 | 19..67 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:04:14 has no hits.
BO07664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:39 Download gff for
BO07664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..894 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:35 Download gff for
BO07664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..894 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:03 Download gff for
BO07664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1331 | 10..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:19 Download gff for
BO07664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1331 | 10..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:19 Download gff for
BO07664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13779645..13779737 | 822..914 | 94 | | Plus |
2L | 13774995..13775047 | 10..63 | 92 | <- | Plus |
2L | 13775255..13775406 | 64..215 | 100 | <- | Plus |
2L | 13775471..13775808 | 216..553 | 100 | <- | Plus |
2L | 13775878..13776034 | 554..710 | 100 | <- | Plus |
2L | 13776098..13776156 | 711..769 | 100 | <- | Plus |
2L | 13777771..13777822 | 770..821 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:03 Download gff for
BO07664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13774995..13775047 | 10..63 | 92 | <- | Plus |
arm_2L | 13775255..13775406 | 64..215 | 100 | <- | Plus |
arm_2L | 13775471..13775808 | 216..553 | 100 | <- | Plus |
arm_2L | 13775878..13776034 | 554..710 | 100 | <- | Plus |
arm_2L | 13776098..13776156 | 711..769 | 100 | <- | Plus |
arm_2L | 13777771..13777822 | 770..821 | 100 | <- | Plus |
arm_2L | 13779645..13779737 | 822..914 | 94 | | Plus |
BO07664.5prime Sequence
923 bp (761 high quality bases) assembled on 2006-01-06
> BO07664.5prime
GAAGTTATCAGTCGACATGGCCACGACAGCGGCCGCAATGGCCGCAACGA
GTGTAGTTGTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTG
CACGGTGCGACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTT
TGTCAGCAAACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGA
TTCCCTTTGTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCAT
GGATTTGCGAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCT
TCACAATGGCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTA
CGCGATCCATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTG
CGCGAAAAGGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGA
GCTGAGCTTCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCG
ATGTGCGCCGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGAC
AAGACGCGGGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGT
CAATGAGTGGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCA
TCACAAACGTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTT
CCCGATACGGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAG
TGACTTCGGGGACGACGAGTTCCCCAACATGTTGTGCGTGGAGGCGGGCA
ATGTGACATCGCCGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGC
CAGATCCTTCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCG
GAATCGCGCAAGCTTTCTAGACC
BO07664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-PA | 894 | CG9008-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
CG9008-PB | 576 | CG9008-RB | 1..573 | 335..907 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 1987 | CG9008-RA | 434..1324 | 17..907 | 4455 | 100 | Plus |
CG9008-RE | 2194 | CG9008-RE | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RD | 2125 | CG9008-RD | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RE | 2194 | CG9008-RE | 1483..1531 | 859..907 | 245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13775471..13775808 | 710..373 | 1690 | 100 | Minus |
2L | 23513712 | 2L | 13775876..13776034 | 374..216 | 795 | 100 | Minus |
2L | 23513712 | 2L | 13775255..13775407 | 862..710 | 765 | 100 | Minus |
2L | 23513712 | 2L | 13779642..13779732 | 107..17 | 455 | 100 | Minus |
2L | 23513712 | 2L | 13776098..13776159 | 215..154 | 310 | 100 | Minus |
2L | 23513712 | 2L | 13777771..13777823 | 156..104 | 265 | 100 | Minus |
2L | 23513712 | 2L | 13775003..13775051 | 907..859 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:04:18 has no hits.
BO07664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:40 Download gff for
BO07664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..894 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:36 Download gff for
BO07664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..894 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:04 Download gff for
BO07664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1331 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:26 Download gff for
BO07664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1331 | 12..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:26 Download gff for
BO07664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
2L | 13779645..13779737 | 12..104 | 97 | | Minus |
2L | 13774995..13775047 | 863..916 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:04 Download gff for
BO07664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13774995..13775047 | 863..916 | 92 | <- | Minus |
arm_2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
arm_2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
arm_2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
arm_2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
arm_2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
arm_2L | 13779645..13779737 | 12..104 | 97 | | Minus |
BO07664.complete Sequence
925 bp (925 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630885
> BO07664.complete
GAAGTTATCAGTCGACATGGCCACGACAGCGGCCGCAATGGCCGCAACGA
GTGTAGTTGTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTG
CACGGTGCGACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTT
TGTCAGCAAACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGA
TTCCCTTTGTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCAT
GGATTTGCGAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCT
TCACAATGGCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTA
CGCGATCCATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTG
CGCGAAAAGGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGA
GCTGAGCTTCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCG
ATGTGCGCCGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGAC
AAGACGCGGGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGT
CAATGAGTGGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCA
TCACAAACGTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTT
CCCGATACGGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAG
TGACTTCGGGGACGACGAGTTCCCCAACATGTTGTGCGTGGAGGCGGGCA
ATGTGACATCGCCGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGC
CAGATCCTTCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCG
GAATCGCGCAAGCTTTCTAGACCAT
BO07664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 894 | CG9008-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
CG9008-RE | 870 | CG9008-PE | 1..846 | 17..862 | 4230 | 100 | Plus |
CG9008-RD | 927 | CG9008-PD | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 1987 | CG9008-RA | 434..1324 | 17..907 | 4455 | 100 | Plus |
CG9008-RE | 2194 | CG9008-RE | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RD | 2125 | CG9008-RD | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RE | 2194 | CG9008-RE | 1483..1531 | 859..907 | 245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13775471..13775808 | 710..373 | 1690 | 100 | Minus |
2L | 23513712 | 2L | 13775876..13776034 | 374..216 | 795 | 100 | Minus |
2L | 23513712 | 2L | 13775255..13775407 | 862..710 | 765 | 100 | Minus |
2L | 23513712 | 2L | 13779642..13779732 | 107..17 | 455 | 100 | Minus |
2L | 23513712 | 2L | 13776098..13776159 | 215..154 | 310 | 100 | Minus |
2L | 23513712 | 2L | 13777771..13777823 | 156..104 | 265 | 100 | Minus |
2L | 23513712 | 2L | 13775003..13775051 | 907..859 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:39:39 has no hits.
BO07664.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:11 Download gff for
BO07664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 1..894 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:54 Download gff for
BO07664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 427..1329 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:26 Download gff for
BO07664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 434..1324 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:11 Download gff for
BO07664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 427..1329 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:11 Download gff for
BO07664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 434..1324 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:11 Download gff for
BO07664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13774999..13775047 | 863..909 | 95 | <- | Minus |
2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
2L | 13779645..13779732 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:26 Download gff for
BO07664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13779645..13779732 | 17..104 | 100 | | Minus |
arm_2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
arm_2L | 13774999..13775047 | 863..909 | 95 | <- | Minus |
arm_2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
arm_2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
arm_2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
arm_2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
BO07664.pep Sequence
Translation from 16 to 925
> BO07664.pep
MATTAAAMAATSVVVLDRGNNTTCTINLHGATVVSWRVNNQEQLFVSKLA
SFDGKKAIRGGIPFVFPQFGAWSFGPQHGFARITRWHLERPPDRLHNGDV
EAIFSLMDNDFTRSIWNYQFRITYRLILREKELHFHIGVYNPSKELSFTF
NMLLHTYLKVPDVRRCQITGLQGCHFIDKTRENALYQEGREVVTVNEWTD
RIYQHTPQEHVITNVVSGRKMRLHKYNFPDTVIWNPWIDRSREMSDFGDD
EFPNMLCVEAGNVTSPVILLPGTAFEASQILQIIIEGNVSRKTKRNRASF
LDH
BO07664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-PA | 297 | CG9008-PA | 1..297 | 1..297 | 1590 | 100 | Plus |
CG9008-PE | 289 | CG9008-PE | 1..283 | 1..283 | 1520 | 99.6 | Plus |
CG9008-PD | 308 | CG9008-PD | 1..282 | 1..282 | 1517 | 100 | Plus |