Clone BO07665 Report

Search the DGRC for BO07665

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42El-RA
Protein status:BO07665.pep: validated full length
Sequenced Size:685

Clone Sequence Records

BO07665.3prime Sequence

683 bp (682 high quality bases) assembled on 2006-01-06

> BO07665.3prime
ATGGTCTAGAAAGCTTGCATAGTTATATCGTCTCCGCCGGTTGGTGTAGT
GAATGGCCAAGATGATGGCCAGCAATAGAATGACAGCGTTGAATCCGAGC
AGACCCCACTCCAAATAGCCCAGAGTGGTTGCCTCATCTGCAAAAGCCTC
CTCCACTTTGATGAGGCAGCCGCGCACATATAGATTCAGTGGATTCACAC
AGCTGTCGTCCTTGCAACAGCTACTTGGAACGGTATTGTTCCAGAATTTG
ATATCCAAGTAGTCTTGGGCACTGTCGCGGCCACAGCAATAGTACGTTTT
CTGAATAATATCCATACTGCCAGGCTTCGTCTGCTCCAGCTCCCACTGAT
TCTCCACCGTTTGAAGCGCGTACTTTTTAAATACATCTTTGGGATTCAGG
ATGATAAACGCCACTATAAGTAGCAGCAAAATCAGCAGCAGTGACGCATA
CGTCCAGAGCATGCGCGGCGATTCGCGAACGGCTCCACAGCATCCAAACA
GGGATATTACCAGGATAGTACCGCCCAGAATTAAGATGCCGATGGCATAT
GCATCTGGCATTGCTCCCCAGCCAAGGCCGCCAAAGATGAGCACCAGGAT
ACCGAGTATCGCCCATAAGGCATTGAACAGGAACAGCGAGTACTTTATGG
TGCCCGTTGCGCAACCCATGTCGACTGATAACT

BO07665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12840-PA 654 Tsp42El-RA 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 1062 CG12840-RA 181..836 674..19 3265 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7047972..7048180 295..87 1045 100 Minus
2R 25286936 2R 7047276..7047435 610..451 800 100 Minus
2R 25286936 2R 7047500..7047656 451..295 785 100 Minus
2R 25286936 2R 7048244..7048312 87..19 345 100 Minus
2R 25286936 2R 7045949..7046013 674..610 310 98.5 Minus
Blast to na_te.dros performed on 2015-02-13 05:34:11 has no hits.

BO07665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:41 Download gff for BO07665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 18..669 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:38 Download gff for BO07665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 18..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:25 Download gff for BO07665.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..836 19..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:24 Download gff for BO07665.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..836 19..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:24 Download gff for BO07665.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7045946..7046013 610..677 97 -> Minus
2R 7047277..7047435 451..609 100 -> Minus
2R 7047501..7047656 295..450 100 -> Minus
2R 7047973..7048179 88..294 100 -> Minus
2R 7048244..7048312 19..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:25 Download gff for BO07665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2933451..2933518 610..677 97 -> Minus
arm_2R 2934782..2934940 451..609 100 -> Minus
arm_2R 2935006..2935161 295..450 100 -> Minus
arm_2R 2935478..2935684 88..294 100 -> Minus
arm_2R 2935749..2935817 19..87 100   Minus

BO07665.5prime Sequence

683 bp (682 high quality bases) assembled on 2006-01-06

> BO07665.5prime
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATGCAAGCTTTCTAGACC

BO07665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12840-PA 654 Tsp42El-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 1062 CG12840-RA 181..836 12..667 3265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7047972..7048180 391..599 1045 100 Plus
2R 25286936 2R 7047276..7047435 76..235 800 100 Plus
2R 25286936 2R 7047500..7047656 235..391 785 100 Plus
2R 25286936 2R 7048244..7048312 599..667 345 100 Plus
2R 25286936 2R 7045949..7046013 12..76 310 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 23:40:21 has no hits.

BO07665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:42 Download gff for BO07665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 17..668 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:39 Download gff for BO07665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12840-PA 1..654 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:34 Download gff for BO07665.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..836 9..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:47 Download gff for BO07665.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 178..836 9..667 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:47 Download gff for BO07665.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7047973..7048179 392..598 100 -> Plus
2R 7048244..7048312 599..667 100   Plus
2R 7045946..7046013 9..76 97 -> Plus
2R 7047277..7047435 77..235 100 -> Plus
2R 7047501..7047656 236..391 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:34 Download gff for BO07665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2933451..2933518 9..76 97 -> Plus
arm_2R 2934782..2934940 77..235 100 -> Plus
arm_2R 2935006..2935161 236..391 100 -> Plus
arm_2R 2935478..2935684 392..598 100 -> Plus
arm_2R 2935749..2935817 599..667 100   Plus

BO07665.complete Sequence

685 bp (685 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630886

> BO07665.complete
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATGCAAGCTTTCTAGACCAT

BO07665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 654 CG12840-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-RA 1062 CG12840-RA 181..836 12..667 3265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7047972..7048180 391..599 1045 100 Plus
2R 25286936 2R 7047276..7047435 76..235 800 100 Plus
2R 25286936 2R 7047500..7047656 235..391 785 100 Plus
2R 25286936 2R 7048244..7048312 599..667 345 100 Plus
2R 25286936 2R 7045949..7046013 12..76 310 98.5 Plus
Blast to na_te.dros performed on 2014-11-27 08:35:21 has no hits.

BO07665.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:12 Download gff for BO07665.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 1..654 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:56 Download gff for BO07665.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 174..832 9..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:35 Download gff for BO07665.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 186..836 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:12 Download gff for BO07665.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 174..832 9..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:41 Download gff for BO07665.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42El-RA 186..836 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:41 Download gff for BO07665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7045954..7046013 17..76 100 -> Plus
2R 7047277..7047435 77..235 100 -> Plus
2R 7047501..7047656 236..391 100 -> Plus
2R 7047973..7048179 392..598 100 -> Plus
2R 7048244..7048312 599..669 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:35 Download gff for BO07665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2934782..2934940 77..235 100 -> Plus
arm_2R 2935006..2935161 236..391 100 -> Plus
arm_2R 2935478..2935684 392..598 100 -> Plus
arm_2R 2935749..2935817 599..669 97   Plus
arm_2R 2933459..2933518 17..76 100 -> Plus

BO07665.pep Sequence

Translation from 16 to 685

> BO07665.pep
MGCATGTIKYSLFLFNALWAILGILVLIFGGLGWGAMPDAYAIGILILGG
TILVISLFGCCGAVRESPRMLWTYASLLLILLLLIVAFIILNPKDVFKKY
ALQTVENQWELEQTKPGSMDIIQKTYYCCGRDSAQDYLDIKFWNNTVPSS
CCKDDSCVNPLNLYVRGCLIKVEEAFADEATTLGYLEWGLLGFNAVILLL
AIILAIHYTNRRRRYNYASFLDH

BO07665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42El-PA 217 CG12840-PA 1..217 1..217 1150 100 Plus
Tsp42Ee-PB 228 CG10106-PB 1..228 1..217 330 36.1 Plus
Tsp42Ee-PA 228 CG10106-PA 1..228 1..217 330 36.1 Plus
Tsp42Ek-PB 215 CG12841-PB 1..215 1..217 301 33.3 Plus
Tsp42Ek-PA 215 CG12841-PA 1..215 1..217 301 33.3 Plus