Clone Sequence Records
BO07665.3prime Sequence
683 bp (682 high quality bases) assembled on 2006-01-06
> BO07665.3prime
ATGGTCTAGAAAGCTTGCATAGTTATATCGTCTCCGCCGGTTGGTGTAGT
GAATGGCCAAGATGATGGCCAGCAATAGAATGACAGCGTTGAATCCGAGC
AGACCCCACTCCAAATAGCCCAGAGTGGTTGCCTCATCTGCAAAAGCCTC
CTCCACTTTGATGAGGCAGCCGCGCACATATAGATTCAGTGGATTCACAC
AGCTGTCGTCCTTGCAACAGCTACTTGGAACGGTATTGTTCCAGAATTTG
ATATCCAAGTAGTCTTGGGCACTGTCGCGGCCACAGCAATAGTACGTTTT
CTGAATAATATCCATACTGCCAGGCTTCGTCTGCTCCAGCTCCCACTGAT
TCTCCACCGTTTGAAGCGCGTACTTTTTAAATACATCTTTGGGATTCAGG
ATGATAAACGCCACTATAAGTAGCAGCAAAATCAGCAGCAGTGACGCATA
CGTCCAGAGCATGCGCGGCGATTCGCGAACGGCTCCACAGCATCCAAACA
GGGATATTACCAGGATAGTACCGCCCAGAATTAAGATGCCGATGGCATAT
GCATCTGGCATTGCTCCCCAGCCAAGGCCGCCAAAGATGAGCACCAGGAT
ACCGAGTATCGCCCATAAGGCATTGAACAGGAACAGCGAGTACTTTATGG
TGCCCGTTGCGCAACCCATGTCGACTGATAACT
BO07665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12840-PA | 654 | Tsp42El-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 1062 | CG12840-RA | 181..836 | 674..19 | 3265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7047972..7048180 | 295..87 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 7047276..7047435 | 610..451 | 800 | 100 | Minus |
2R | 25286936 | 2R | 7047500..7047656 | 451..295 | 785 | 100 | Minus |
2R | 25286936 | 2R | 7048244..7048312 | 87..19 | 345 | 100 | Minus |
2R | 25286936 | 2R | 7045949..7046013 | 674..610 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:34:11 has no hits.
BO07665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:41 Download gff for
BO07665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:38 Download gff for
BO07665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:25 Download gff for
BO07665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..836 | 19..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:24 Download gff for
BO07665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..836 | 19..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:24 Download gff for
BO07665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7045946..7046013 | 610..677 | 97 | -> | Minus |
2R | 7047277..7047435 | 451..609 | 100 | -> | Minus |
2R | 7047501..7047656 | 295..450 | 100 | -> | Minus |
2R | 7047973..7048179 | 88..294 | 100 | -> | Minus |
2R | 7048244..7048312 | 19..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:25 Download gff for
BO07665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2933451..2933518 | 610..677 | 97 | -> | Minus |
arm_2R | 2934782..2934940 | 451..609 | 100 | -> | Minus |
arm_2R | 2935006..2935161 | 295..450 | 100 | -> | Minus |
arm_2R | 2935478..2935684 | 88..294 | 100 | -> | Minus |
arm_2R | 2935749..2935817 | 19..87 | 100 | | Minus |
BO07665.5prime Sequence
683 bp (682 high quality bases) assembled on 2006-01-06
> BO07665.5prime
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATGCAAGCTTTCTAGACC
BO07665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12840-PA | 654 | Tsp42El-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 1062 | CG12840-RA | 181..836 | 12..667 | 3265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7047972..7048180 | 391..599 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 7047276..7047435 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7047500..7047656 | 235..391 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7048244..7048312 | 599..667 | 345 | 100 | Plus |
2R | 25286936 | 2R | 7045949..7046013 | 12..76 | 310 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:40:21 has no hits.
BO07665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:42 Download gff for
BO07665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:39 Download gff for
BO07665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12840-PA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:34 Download gff for
BO07665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..836 | 9..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:47 Download gff for
BO07665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 178..836 | 9..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:47 Download gff for
BO07665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7047973..7048179 | 392..598 | 100 | -> | Plus |
2R | 7048244..7048312 | 599..667 | 100 | | Plus |
2R | 7045946..7046013 | 9..76 | 97 | -> | Plus |
2R | 7047277..7047435 | 77..235 | 100 | -> | Plus |
2R | 7047501..7047656 | 236..391 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:34 Download gff for
BO07665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2933451..2933518 | 9..76 | 97 | -> | Plus |
arm_2R | 2934782..2934940 | 77..235 | 100 | -> | Plus |
arm_2R | 2935006..2935161 | 236..391 | 100 | -> | Plus |
arm_2R | 2935478..2935684 | 392..598 | 100 | -> | Plus |
arm_2R | 2935749..2935817 | 599..667 | 100 | | Plus |
BO07665.complete Sequence
685 bp (685 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630886
> BO07665.complete
GAAGTTATCAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGC
TGTTCCTGTTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATC
TTTGGCGGCCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCAT
CTTAATTCTGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTG
GAGCCGTTCGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTG
CTGATTTTGCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGA
TGTATTTAAAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGG
AGCAGACGAAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGC
TGTGGCCGCGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAA
TACCGTTCCAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGA
ATCTATATGTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGAT
GAGGCAACCACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGC
TGTCATTCTATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGC
GGAGACGATATAACTATGCAAGCTTTCTAGACCAT
BO07665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 654 | CG12840-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-RA | 1062 | CG12840-RA | 181..836 | 12..667 | 3265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7047972..7048180 | 391..599 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 7047276..7047435 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7047500..7047656 | 235..391 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7048244..7048312 | 599..667 | 345 | 100 | Plus |
2R | 25286936 | 2R | 7045949..7046013 | 12..76 | 310 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:35:21 has no hits.
BO07665.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:12 Download gff for
BO07665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:56 Download gff for
BO07665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 174..832 | 9..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:35 Download gff for
BO07665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 186..836 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:12 Download gff for
BO07665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 174..832 | 9..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:41 Download gff for
BO07665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42El-RA | 186..836 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:41 Download gff for
BO07665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7045954..7046013 | 17..76 | 100 | -> | Plus |
2R | 7047277..7047435 | 77..235 | 100 | -> | Plus |
2R | 7047501..7047656 | 236..391 | 100 | -> | Plus |
2R | 7047973..7048179 | 392..598 | 100 | -> | Plus |
2R | 7048244..7048312 | 599..669 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:35 Download gff for
BO07665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2934782..2934940 | 77..235 | 100 | -> | Plus |
arm_2R | 2935006..2935161 | 236..391 | 100 | -> | Plus |
arm_2R | 2935478..2935684 | 392..598 | 100 | -> | Plus |
arm_2R | 2935749..2935817 | 599..669 | 97 | | Plus |
arm_2R | 2933459..2933518 | 17..76 | 100 | -> | Plus |
BO07665.pep Sequence
Translation from 16 to 685
> BO07665.pep
MGCATGTIKYSLFLFNALWAILGILVLIFGGLGWGAMPDAYAIGILILGG
TILVISLFGCCGAVRESPRMLWTYASLLLILLLLIVAFIILNPKDVFKKY
ALQTVENQWELEQTKPGSMDIIQKTYYCCGRDSAQDYLDIKFWNNTVPSS
CCKDDSCVNPLNLYVRGCLIKVEEAFADEATTLGYLEWGLLGFNAVILLL
AIILAIHYTNRRRRYNYASFLDH
BO07665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..217 | 1150 | 100 | Plus |
Tsp42Ee-PB | 228 | CG10106-PB | 1..228 | 1..217 | 330 | 36.1 | Plus |
Tsp42Ee-PA | 228 | CG10106-PA | 1..228 | 1..217 | 330 | 36.1 | Plus |
Tsp42Ek-PB | 215 | CG12841-PB | 1..215 | 1..217 | 301 | 33.3 | Plus |
Tsp42Ek-PA | 215 | CG12841-PA | 1..215 | 1..217 | 301 | 33.3 | Plus |