Clone Sequence Records
BO07666.3prime Sequence
842 bp (779 high quality bases) assembled on 2006-01-06
> BO07666.3prime
ATGGTCTAGAAAGCTTGCAACCCTCAACCAGTACATGGAGGAGCGGATTC
TGTTGTAGTCGGGCAGGTTCTCAACGGGACCCACGGCAGCGACGGCTGGG
CACCGATCGTAGATGTACTTCATTGCGACGTCGCGCACATTGCCCACACT
CACGGCATCGATGCGCTGCTCCAGCTCGTGCAGCGGGATGCGGCGGTTGT
AGCACAGGATCTGGCGGCCAATGTCCTCGCAGATGGGTGTGGTGCCGTCG
AGCTGCAGCAGCATGTTGGTCTTCAGAAGGTTCTTGGCGCGCTCGACCTC
AGCCTCGGTAACCATGGTGCACAGACGCATCCACTCGGTCTGCACGTTGA
AGAGCATATCCTCGCACTGCAGAGGGTCGCACACGAAGTAAATGCCCCAG
AGTCCGGTGTCCTTGTAGCATGTGTTGAACGATTGGAAGCTGTGGCAAAG
GTTGTCCTCAGCGCTGGCACGGGCCAGGTTGGAGGCGTTGTTGGCGCCAC
CGCCTTGGGAACGATCCCAAGCACCCACCAAGGTGTTGGCCACCATCAGG
GGGATGTTGTCCTGGTCGGTCCAGCCGCAGCCTTCGACGGCGATGGCGAC
ATGGGCCAGGGGCAGGGAATCGTCGCGCACACGCACCTCGGAGCCGGTGA
AGCGGCAGGGAGTCACCTCCGCGGGCAGCACACTGGCCTCCAGGCCACCC
AAGCTGCTGCAGGCAAGCTTGACCAGATCATCGTGCTTGACGCCGCCAGC
AGCGGCCAGAACGATGCGCGAAGCCTTGTAGTGGGTCTGGATGTAGTCGG
TCAGATCGGCCTTGCCAATGGACTGAATGTTCTTGGTGGGTC
BO07666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-PA | 1413 | CG3731-RA | 587..1410 | 842..19 | 4120 | 100 | Minus |
| CG3731-PB | 1413 | CG3731-RB | 587..1410 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 642..1465 | 842..19 | 4120 | 100 | Minus |
| CG3731-RA | 1632 | CG3731-RA | 714..1537 | 842..19 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14891353..14891723 | 823..453 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 14891949..14892292 | 362..19 | 1720 | 100 | Minus |
| 3R | 32079331 | 3R | 14891785..14891877 | 452..360 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:18:04 has no hits.
BO07666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:43 Download gff for
BO07666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 587..1413 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:40 Download gff for
BO07666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 587..1413 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:07:36 Download gff for
BO07666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 867..1694 | 14..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:51 Download gff for
BO07666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 714..1541 | 14..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:51 Download gff for
BO07666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14891272..14891290 | 824..842 | 100 | -> | Minus |
| 3R | 14891353..14891723 | 453..823 | 100 | -> | Minus |
| 3R | 14891785..14891876 | 361..452 | 100 | -> | Minus |
| 3R | 14891951..14892296 | 14..360 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:07:36 Download gff for
BO07666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716994..10717012 | 824..842 | 100 | -> | Minus |
| arm_3R | 10717075..10717445 | 453..823 | 100 | -> | Minus |
| arm_3R | 10717507..10717598 | 361..452 | 100 | -> | Minus |
| arm_3R | 10717673..10718018 | 14..360 | 99 | | Minus |
BO07666.5prime Sequence
930 bp (820 high quality bases) assembled on 2006-01-06
> BO07666.5prime
GAAGTTATCAGTCGACATGGCGTTGCGAGTTCTTGGCGTGACGCAGAATA
TGCGCTCCTTCATGCGGGGCGTTGACATGATCAAACGATACAAGTCGGCT
GCCACCCTACAGAAGACTCTGCTGAACATACCCGCCACCCAGGTGACCAA
GCTGGACAACGGTCTCCGCGTGGCTAGCGAGGATTCCGGTGCCTCTACCG
CCACCGTGGGACTGTGGATCGATGCTGGGTCGCGCTCCGAGAACGAGAAG
AACAACGGAGTGGCCCACTTCCTGGAGCACATGGCCTTCAAGGGTACCGC
CAAGCGCTCGCAAACGGATTTGGAGCTGGAGGTTGAGAACCTGGGCGCCC
ACTTGAACGCCTACACTTCCAGGGAGCAGACCGTCTTCTACGCCAAGTGT
TTGTCCAAGGATGTGCCCAAAGCCGTCGAGATCCTGGCCGACATCATCCA
GAACTCCAAGCTGGGTGAGGCTGAGATCGCCCGCGAGCGTTCGGTGATTC
TGCGCGAGATGCAGGAGGTGGAGAGCAACCTGCAGGAGGTGGTCTTCGAT
CACCTTCACGCCACCGCCTATCAGGGCACTCCTCTGGGCCAGACCATCCT
GGGACCCACCAAGAACATTCAGTCCATTGGCAAGGCCGATCTGACCGACT
ACATCCAGACCCACTACAAGGCTTCGCGCATCGTTCTGGCCGCTGCTGGC
GGCGTCAAGCACGATGATCTGGTCAAGCTTGCCTGCAGCAGCTTGGGTGG
CCTGGAGGCCAGTGTGCTGCCCGCGGAGGTGACTCCCTGCCGCTTCACCG
GCTCCGAGGTGCGTGTGCGCGACGATTCCCTGCCCCTGGNCCATGTCGCC
ATCGCCGTCGAAGGCTGCGGCTGGACCGACCAGGACAACATCCCCCTGAT
GGTGGCNACACCTTGTTGGGTGCTTGGGAT
BO07666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-PA | 1413 | CG3731-RA | 1..890 | 17..906 | 4431 | 99.8 | Plus |
| CG3731-PB | 1413 | CG3731-RB | 1..890 | 17..906 | 4431 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 56..970 | 17..930 | 4513 | 99.6 | Plus |
| CG3731-RA | 1632 | CG3731-RA | 128..1042 | 17..930 | 4513 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14890960..14891292 | 291..623 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 14891353..14891662 | 622..930 | 1463 | 98.7 | Plus |
| 3R | 32079331 | 3R | 14890696..14890903 | 86..293 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 14890358..14890426 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:41:39 has no hits.
BO07666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:44 Download gff for
BO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 1..915 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:42 Download gff for
BO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 1..915 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:15 Download gff for
BO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 281..1195 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:06 Download gff for
BO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 128..1042 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:06 Download gff for
BO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14890358..14890426 | 17..85 | 100 | -> | Plus |
| 3R | 14890696..14890902 | 86..292 | 100 | -> | Plus |
| 3R | 14890962..14891290 | 293..621 | 100 | -> | Plus |
| 3R | 14891353..14891662 | 622..930 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:15 Download gff for
BO07666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716080..10716148 | 17..85 | 100 | -> | Plus |
| arm_3R | 10716418..10716624 | 86..292 | 100 | -> | Plus |
| arm_3R | 10716684..10717012 | 293..621 | 100 | -> | Plus |
| arm_3R | 10717075..10717384 | 622..930 | 98 | | Plus |
BO07666.complete Sequence
1444 bp (1444 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630887
> BO07666.complete
GAAGTTATCAGTCGACATGGCGTTGCGAGTTCTTGGCGTGACGCAGAATA
TGCGCTCCTTCATGCGGGGCGTTGACATGATCAAACGATACAAGTCGGCT
GCCACCCTACAGAAGACTCTGCTGAACATACCCGCCACCCAGGTGACCAA
GCTGGACAACGGTCTCCGCGTGGCTAGCGAGGATTCCGGTGCCTCTACCG
CCACCGTGGGACTGTGGATCGATGCTGGGTCGCGCTCCGAGAACGAGAAG
AACAACGGAGTGGCCCACTTCCTGGAGCACATGGCCTTCAAGGGTACCGC
CAAGCGCTCGCAAACGGATTTGGAGCTGGAGGTTGAGAACCTGGGCGCCC
ACTTGAACGCCTACACTTCCAGGGAGCAGACCGTCTTCTACGCCAAGTGT
TTGTCCAAGGATGTGCCCAAAGCCGTCGAGATCCTGGCCGACATCATCCA
GAACTCCAAGCTGGGTGAGGCTGAGATCGCCCGCGAGCGTTCGGTGATTC
TGCGCGAGATGCAGGAGGTGGAGAGCAACCTGCAGGAGGTGGTCTTCGAT
CACCTTCACGCCACCGCCTATCAGGGCACTCCTCTGGGCCAGACCATCCT
GGGACCCACCAAGAACATTCAGTCCATTGGCAAGGCCGATCTGACCGACT
ACATCCAGACCCACTACAAGGCTTCGCGCATCGTTCTGGCCGCTGCTGGC
GGCGTCAAGCACGATGATCTGGTCAAGCTTGCCTGCAGCAGCTTGGGTGG
CCTGGAGGCCAGTGTGCTGCCCGCGGAGGTGACTCCCTGCCGCTTCACCG
GCTCCGAGGTGCGTGTGCGCGACGATTCCCTGCCCCTGGCCCATGTCGCC
ATCGCCGTCGAAGGCTGCGGCTGGACCGACCAGGACAACATCCCCCTGAT
GGTGGCCAACACCTTGGTGGGTGCTTGGGATCGTTCCCAAGGCGGTGGCG
CCAACAACGCCTCCAACCTGGCCCGTGCCAGCGCTGAGGACAACCTTTGC
CACAGCTTCCAATCGTTCAACACATGCTACAAGGACACCGGACTCTGGGG
CATTTACTTCGTGTGCGACCCTCTGCAGTGCGAGGATATGCTCTTCAACG
TGCAGACCGAGTGGATGCGTCTGTGCACCATGGTTACCGAGGCTGAGGTC
GAGCGCGCCAAGAACCTTCTGAAGACCAACATGCTGCTGCAGCTCGACGG
CACCACACCCATCTGCGAGGACATTGGCCGCCAGATCCTGTGCTACAACC
GCCGCATCCCGCTGCACGAGCTGGAGCAGCGCATCGATGCCGTGAGTGTG
GGCAATGTGCGCGACGTCGCAATGAAGTACATCTACGATCGGTGCCCAGC
CGTCGCTGCCGTGGGTCCCGTTGAGAACCTGCCCGACTACAACAGAATCC
GCTCCTCCATGTACTGGTTGAGGGTTGCAAGCTTTCTAGACCAT
BO07666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1413 | CG3731-PB | 1..1410 | 17..1426 | 7050 | 100 | Plus |
| CG3731-RA | 1413 | CG3731-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 56..1465 | 17..1426 | 7050 | 100 | Plus |
| CG3731-RA | 1632 | CG3731-RA | 128..1537 | 17..1426 | 7050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14891353..14891723 | 622..992 | 1855 | 100 | Plus |
| 3R | 32079331 | 3R | 14891949..14892292 | 1083..1426 | 1720 | 100 | Plus |
| 3R | 32079331 | 3R | 14890960..14891292 | 291..623 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 14890696..14890903 | 86..293 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 14891785..14891877 | 993..1085 | 465 | 100 | Plus |
| 3R | 32079331 | 3R | 14890358..14890426 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:02:13 has no hits.
BO07666.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:15 Download gff for
BO07666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RB | 1..1413 | 17..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:00 Download gff for
BO07666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RB | 209..1622 | 17..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:03:56 Download gff for
BO07666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 281..1690 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:15 Download gff for
BO07666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RB | 209..1622 | 17..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:14 Download gff for
BO07666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 128..1537 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:14 Download gff for
BO07666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14890696..14890902 | 86..292 | 100 | -> | Plus |
| 3R | 14890358..14890426 | 17..85 | 100 | -> | Plus |
| 3R | 14890962..14891290 | 293..621 | 100 | -> | Plus |
| 3R | 14891353..14891723 | 622..992 | 100 | -> | Plus |
| 3R | 14891785..14891876 | 993..1084 | 100 | -> | Plus |
| 3R | 14891951..14892292 | 1085..1428 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:03:56 Download gff for
BO07666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716080..10716148 | 17..85 | 100 | -> | Plus |
| arm_3R | 10716418..10716624 | 86..292 | 100 | -> | Plus |
| arm_3R | 10716684..10717012 | 293..621 | 100 | -> | Plus |
| arm_3R | 10717075..10717445 | 622..992 | 100 | -> | Plus |
| arm_3R | 10717507..10717598 | 993..1084 | 100 | -> | Plus |
| arm_3R | 10717673..10718014 | 1085..1428 | 99 | | Plus |
BO07666.pep Sequence
Translation from 16 to 1444
> BO07666.pep
MALRVLGVTQNMRSFMRGVDMIKRYKSAATLQKTLLNIPATQVTKLDNGL
RVASEDSGASTATVGLWIDAGSRSENEKNNGVAHFLEHMAFKGTAKRSQT
DLELEVENLGAHLNAYTSREQTVFYAKCLSKDVPKAVEILADIIQNSKLG
EAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLGQTILGPTKN
IQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLACSSLGGLEASV
LPAEVTPCRFTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTL
VGAWDRSQGGGANNASNLARASAEDNLCHSFQSFNTCYKDTGLWGIYFVC
DPLQCEDMLFNVQTEWMRLCTMVTEAEVERAKNLLKTNMLLQLDGTTPIC
EDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDRCPAVAAVG
PVENLPDYNRIRSSMYWLRVASFLDH
BO07666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-PB | 470 | CG3731-PB | 1..470 | 1..470 | 2429 | 100 | Plus |
| CG3731-PA | 470 | CG3731-PA | 1..470 | 1..470 | 2429 | 100 | Plus |
| CG8728-PA | 556 | CG8728-PA | 94..540 | 41..465 | 454 | 28.5 | Plus |
| CG4169-PB | 440 | CG4169-PB | 20..434 | 29..456 | 208 | 21.6 | Plus |
| CG4169-PA | 440 | CG4169-PA | 20..434 | 29..456 | 208 | 21.6 | Plus |
