Clone Sequence Records
BO07669.3prime Sequence
869 bp (820 high quality bases) assembled on 2006-01-06
> BO07669.3prime
ATGGTCTAGAAAGCTTGCATTCGTTTTCTCCGACGGGCAGTCACAGGTGA
TGCTGTGGGTATTTCCCAGCAGATCCTTGGGGTCAACGTAGACAGTGCCC
TCCTTGCCTCGAGCAAAAGGTGTATGTCCGTTGGTTTGTAAGTAAAAGTC
GCCATGAATTGTCGTGGGACAATGATGACCCATCACCACGGGCGGGCAAT
TCTCTACTATTTTGTTCTGCTTGAAGTCTGACCATTTCTTGGCGGGCACA
GCATCGAATCCAATGGGATATCGATCCGAAACGCTCTCGGCCCAGAACCA
CCAGCTCCTCCGATGACTGGACAGATCGTTGTCGCTGAGCATCTTGTAGT
TTCGCTTGGGACAGCCAGGCTGCAGGCTGTATCCACCATTTGGCCAGAAA
TCCGCCGTGCCCGTGCTCGTCGGAGCTCCGTACAGCCAGGCGTCCGTGTG
TATCACGTCGACGAACTCCGCATCATTGGCAGACAGGTGCGTGCCCGGAT
AGAAGAGCGGAAATGCGGGATCCAAAGCGGAAATTCTTTTTATCTTTCTG
ACACCCTTGGTGCGTTTAGTAATCTCTCGGCCGAGGAGTCCGGCCAGCTG
GCCGCCCATCGAGTGTCCGACAATGTGGAACTTCTCAATGTCCAGGCCAT
GGTCGAACATTTTGAGCAGGACCTTGGCCAACTCTGGGCCCAGCTGTTTG
AGGTTCGGGAAGGCATCGAACATGTAATTGCCATCGGCCAGTTCACCCCA
GTCTAGGACGATAAGATTGGTATCCTTTCGCTCCAGATAGGCCTCGGCTA
TGACGTGAATGCTCTCCACATCCGGATCTTCCAAGTAGCCGTGCAAATAG
AGCACGGTGTTCTTGCCCA
BO07669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-PA | 1023 | CG17292-RA | 170..1020 | 869..19 | 4230 | 99.8 | Minus |
CG17292-PB | 1023 | CG17292-RB | 170..1020 | 869..19 | 4230 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:12:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1473 | CG17292-RD | 498..1348 | 869..19 | 4240 | 99.9 | Minus |
CG17292-RC | 2003 | CG17292-RC | 1028..1878 | 869..19 | 4240 | 99.9 | Minus |
CG17292-RB | 1397 | CG17292-RB | 422..1272 | 869..19 | 4240 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8373538..8373914 | 537..161 | 1870 | 99.7 | Minus |
2L | 23513712 | 2L | 8372955..8373288 | 869..536 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 8373984..8374125 | 160..19 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:12:27 has no hits.
BO07669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:47 Download gff for
BO07669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 171..1023 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:47 Download gff for
BO07669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 171..1023 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:39 Download gff for
BO07669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RA | 280..1132 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:46 Download gff for
BO07669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 423..1275 | 15..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:46 Download gff for
BO07669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8372956..8373288 | 536..868 | 100 | -> | Minus |
2L | 8373540..8373914 | 161..535 | 99 | -> | Minus |
2L | 8373984..8374128 | 15..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:39 Download gff for
BO07669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8372956..8373288 | 536..868 | 100 | -> | Minus |
arm_2L | 8373540..8373914 | 161..535 | 99 | -> | Minus |
arm_2L | 8373984..8374128 | 15..160 | 98 | | Minus |
BO07669.5prime Sequence
836 bp (830 high quality bases) assembled on 2006-01-06
> BO07669.5prime
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCAGACTTCAAGC
BO07669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-PA | 1023 | CG17292-RA | 1..820 | 17..836 | 4075 | 99.8 | Plus |
CG17292-PB | 1023 | CG17292-RB | 1..820 | 17..836 | 4075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1473 | CG17292-RD | 327..1148 | 15..836 | 4095 | 99.9 | Plus |
CG17292-RC | 2003 | CG17292-RC | 857..1678 | 15..836 | 4095 | 99.9 | Plus |
CG17292-RB | 1397 | CG17292-RB | 251..1072 | 15..836 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8372880..8373288 | 111..519 | 2045 | 100 | Plus |
2L | 23513712 | 2L | 8373538..8373856 | 518..836 | 1580 | 99.7 | Plus |
2L | 23513712 | 2L | 8372687..8372753 | 45..111 | 335 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 23:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2792..2845 | 14..67 | 117 | 68.5 | Plus |
BO07669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:48 Download gff for
BO07669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:48 Download gff for
BO07669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-PB | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:36 Download gff for
BO07669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RA | 103..929 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:50 Download gff for
BO07669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 246..1072 | 9..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:50 Download gff for
BO07669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8372591..8372625 | 9..44 | 91 | -> | Plus |
2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
2L | 8373540..8373856 | 520..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:36 Download gff for
BO07669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8372591..8372625 | 9..44 | 91 | -> | Plus |
arm_2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
arm_2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
arm_2L | 8373540..8373856 | 520..836 | 99 | | Plus |
BO07669.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630888
> BO07669.complete
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCAGACTTCAAGCAGAACAAAATAGTA
GAGAATTGCCCGCCCGTGGTGATGGGTCATCATTGTCCCACGACAATTCA
TGGCGACTTTTACTTACAAACCAACGGACATACACCTTTTGCTCGAGGCA
AGGAGGGCACTGTCTACGTTGACCCCAAGGATCTGCTGGGAAATACCCAC
AGCATCACCTGTGACTGCCCGTCGGAGAAAACGAATGCAAGCTTTCTAGA
CCAT
BO07669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1023 | CG17292-PD | 1..1020 | 17..1036 | 5085 | 99.9 | Plus |
CG17292-RC | 1023 | CG17292-PC | 1..1020 | 17..1036 | 5085 | 99.9 | Plus |
CG17292-RB | 1023 | CG17292-PB | 1..1020 | 17..1036 | 5085 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-RD | 1473 | CG17292-RD | 327..1348 | 15..1036 | 5095 | 99.9 | Plus |
CG17292-RC | 2003 | CG17292-RC | 857..1878 | 15..1036 | 5095 | 99.9 | Plus |
CG17292-RB | 1397 | CG17292-RB | 251..1272 | 15..1036 | 5095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8372880..8373288 | 111..519 | 2045 | 100 | Plus |
2L | 23513712 | 2L | 8373538..8373914 | 518..894 | 1870 | 99.7 | Plus |
2L | 23513712 | 2L | 8373984..8374125 | 895..1036 | 710 | 100 | Plus |
2L | 23513712 | 2L | 8372687..8372753 | 45..111 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2792..2845 | 14..67 | 117 | 68.5 | Plus |
BO07669.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:17 Download gff for
BO07669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 1..1023 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:02 Download gff for
BO07669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 263..1292 | 9..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:11 Download gff for
BO07669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RA | 110..1129 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:17 Download gff for
BO07669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 263..1292 | 9..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:50 Download gff for
BO07669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17292-RB | 253..1272 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:50 Download gff for
BO07669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8373984..8374125 | 895..1038 | 98 | | Plus |
2L | 8372598..8372625 | 17..44 | 100 | -> | Plus |
2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
2L | 8373540..8373914 | 520..894 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:11 Download gff for
BO07669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8373984..8374125 | 895..1038 | 98 | | Plus |
arm_2L | 8372598..8372625 | 17..44 | 100 | -> | Plus |
arm_2L | 8372687..8372753 | 45..111 | 100 | -> | Plus |
arm_2L | 8372881..8373288 | 112..519 | 100 | -> | Plus |
arm_2L | 8373540..8373914 | 520..894 | 99 | -> | Plus |
BO07669.pep Sequence
Translation from 16 to 1054
> BO07669.pep
MHKAIKNKSRLLCGLKNSKADLTTAKFILYYGPTVADSDIYDLTDFQSLL
EDEHLDLGKNTVLYLHGYLEDPDVESIHVIAEAYLERKDTNLIVLDWGEL
ADGNYMFDAFPNLKQLGPELAKVLLKMFDHGLDIEKFHIVGHSMGGQLAG
LLGREITKRTKGVRKIKRISALDPAFPLFYPGTHLSANDAEFVDVIHTDA
WLYGAPTSTGTADFWPNGGYSLQPGCPKRNYKMLSDNDLSSHRRSWWFWA
ESVSDRYPIGFDAVPAKKWSDFKQNKIVENCPPVVMGHHCPTTIHGDFYL
QTNGHTPFARGKEGTVYVDPKDLLGNTHSITCDCPSEKTNASFLDH
BO07669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17292-PD | 340 | CG17292-PD | 1..340 | 1..340 | 1854 | 100 | Plus |
CG17292-PC | 340 | CG17292-PC | 1..340 | 1..340 | 1854 | 100 | Plus |
CG17292-PB | 340 | CG17292-PB | 1..340 | 1..340 | 1854 | 100 | Plus |
CG17292-PA | 340 | CG17292-PA | 1..340 | 1..340 | 1854 | 100 | Plus |
CG6472-PB | 389 | CG6472-PB | 45..337 | 26..318 | 397 | 35.3 | Plus |