Clone BO07669 Report

Search the DGRC for BO07669

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG17292-RA
Protein status:BO07669.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO07669.3prime Sequence

869 bp (820 high quality bases) assembled on 2006-01-06

> BO07669.3prime
ATGGTCTAGAAAGCTTGCATTCGTTTTCTCCGACGGGCAGTCACAGGTGA
TGCTGTGGGTATTTCCCAGCAGATCCTTGGGGTCAACGTAGACAGTGCCC
TCCTTGCCTCGAGCAAAAGGTGTATGTCCGTTGGTTTGTAAGTAAAAGTC
GCCATGAATTGTCGTGGGACAATGATGACCCATCACCACGGGCGGGCAAT
TCTCTACTATTTTGTTCTGCTTGAAGTCTGACCATTTCTTGGCGGGCACA
GCATCGAATCCAATGGGATATCGATCCGAAACGCTCTCGGCCCAGAACCA
CCAGCTCCTCCGATGACTGGACAGATCGTTGTCGCTGAGCATCTTGTAGT
TTCGCTTGGGACAGCCAGGCTGCAGGCTGTATCCACCATTTGGCCAGAAA
TCCGCCGTGCCCGTGCTCGTCGGAGCTCCGTACAGCCAGGCGTCCGTGTG
TATCACGTCGACGAACTCCGCATCATTGGCAGACAGGTGCGTGCCCGGAT
AGAAGAGCGGAAATGCGGGATCCAAAGCGGAAATTCTTTTTATCTTTCTG
ACACCCTTGGTGCGTTTAGTAATCTCTCGGCCGAGGAGTCCGGCCAGCTG
GCCGCCCATCGAGTGTCCGACAATGTGGAACTTCTCAATGTCCAGGCCAT
GGTCGAACATTTTGAGCAGGACCTTGGCCAACTCTGGGCCCAGCTGTTTG
AGGTTCGGGAAGGCATCGAACATGTAATTGCCATCGGCCAGTTCACCCCA
GTCTAGGACGATAAGATTGGTATCCTTTCGCTCCAGATAGGCCTCGGCTA
TGACGTGAATGCTCTCCACATCCGGATCTTCCAAGTAGCCGTGCAAATAG
AGCACGGTGTTCTTGCCCA

BO07669.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-PA 1023 CG17292-RA 170..1020 869..19 4230 99.8 Minus
CG17292-PB 1023 CG17292-RB 170..1020 869..19 4230 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1473 CG17292-RD 498..1348 869..19 4240 99.9 Minus
CG17292-RC 2003 CG17292-RC 1028..1878 869..19 4240 99.9 Minus
CG17292-RB 1397 CG17292-RB 422..1272 869..19 4240 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8373538..8373914 537..161 1870 99.7 Minus
2L 23513712 2L 8372955..8373288 869..536 1670 100 Minus
2L 23513712 2L 8373984..8374125 160..19 710 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:12:27 has no hits.

BO07669.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:47 Download gff for BO07669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 171..1023 15..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:47 Download gff for BO07669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 171..1023 15..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:39 Download gff for BO07669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RA 280..1132 15..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:46 Download gff for BO07669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 423..1275 15..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:46 Download gff for BO07669.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8372956..8373288 536..868 100 -> Minus
2L 8373540..8373914 161..535 99 -> Minus
2L 8373984..8374128 15..160 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:39 Download gff for BO07669.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8372956..8373288 536..868 100 -> Minus
arm_2L 8373540..8373914 161..535 99 -> Minus
arm_2L 8373984..8374128 15..160 98   Minus

BO07669.5prime Sequence

836 bp (830 high quality bases) assembled on 2006-01-06

> BO07669.5prime
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCAGACTTCAAGC

BO07669.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-PA 1023 CG17292-RA 1..820 17..836 4075 99.8 Plus
CG17292-PB 1023 CG17292-RB 1..820 17..836 4075 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1473 CG17292-RD 327..1148 15..836 4095 99.9 Plus
CG17292-RC 2003 CG17292-RC 857..1678 15..836 4095 99.9 Plus
CG17292-RB 1397 CG17292-RB 251..1072 15..836 4095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8372880..8373288 111..519 2045 100 Plus
2L 23513712 2L 8373538..8373856 518..836 1580 99.7 Plus
2L 23513712 2L 8372687..8372753 45..111 335 100 Plus
Blast to na_te.dros performed 2015-02-12 23:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2792..2845 14..67 117 68.5 Plus

BO07669.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:48 Download gff for BO07669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 1..820 17..836 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:48 Download gff for BO07669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-PB 1..820 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:36 Download gff for BO07669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RA 103..929 9..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:50 Download gff for BO07669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 246..1072 9..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:50 Download gff for BO07669.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8372591..8372625 9..44 91 -> Plus
2L 8372687..8372753 45..111 100 -> Plus
2L 8372881..8373288 112..519 100 -> Plus
2L 8373540..8373856 520..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:36 Download gff for BO07669.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8372591..8372625 9..44 91 -> Plus
arm_2L 8372687..8372753 45..111 100 -> Plus
arm_2L 8372881..8373288 112..519 100 -> Plus
arm_2L 8373540..8373856 520..836 99   Plus

BO07669.complete Sequence

1054 bp (1054 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630888

> BO07669.complete
GAAGTTATCAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCC
TCTGCGGACTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATA
CTATATTATGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGA
TTTCCAGAGTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCG
TGCTCTATTTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCAC
GTCATAGCCGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCT
AGACTGGGGTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGA
ACCTCAAACAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTC
GACCATGGCCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGG
CGGCCAGCTGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGG
GTGTCAGAAAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTC
TTCTATCCGGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGT
GATACACACGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGG
CGGATTTCTGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAG
CGAAACTACAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAG
CTGGTGGTTCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCG
ATGCTGTGCCCGCCAAGAAATGGTCAGACTTCAAGCAGAACAAAATAGTA
GAGAATTGCCCGCCCGTGGTGATGGGTCATCATTGTCCCACGACAATTCA
TGGCGACTTTTACTTACAAACCAACGGACATACACCTTTTGCTCGAGGCA
AGGAGGGCACTGTCTACGTTGACCCCAAGGATCTGCTGGGAAATACCCAC
AGCATCACCTGTGACTGCCCGTCGGAGAAAACGAATGCAAGCTTTCTAGA
CCAT

BO07669.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1023 CG17292-PD 1..1020 17..1036 5085 99.9 Plus
CG17292-RC 1023 CG17292-PC 1..1020 17..1036 5085 99.9 Plus
CG17292-RB 1023 CG17292-PB 1..1020 17..1036 5085 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-RD 1473 CG17292-RD 327..1348 15..1036 5095 99.9 Plus
CG17292-RC 2003 CG17292-RC 857..1878 15..1036 5095 99.9 Plus
CG17292-RB 1397 CG17292-RB 251..1272 15..1036 5095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8372880..8373288 111..519 2045 100 Plus
2L 23513712 2L 8373538..8373914 518..894 1870 99.7 Plus
2L 23513712 2L 8373984..8374125 895..1036 710 100 Plus
2L 23513712 2L 8372687..8372753 45..111 335 100 Plus
Blast to na_te.dros performed 2014-11-28 00:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2792..2845 14..67 117 68.5 Plus

BO07669.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:17 Download gff for BO07669.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 1..1023 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:02 Download gff for BO07669.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 263..1292 9..1040 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:11 Download gff for BO07669.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RA 110..1129 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:17 Download gff for BO07669.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 263..1292 9..1040 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:50 Download gff for BO07669.complete
Subject Subject Range Query Range Percent Splice Strand
CG17292-RB 253..1272 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:50 Download gff for BO07669.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8373984..8374125 895..1038 98   Plus
2L 8372598..8372625 17..44 100 -> Plus
2L 8372687..8372753 45..111 100 -> Plus
2L 8372881..8373288 112..519 100 -> Plus
2L 8373540..8373914 520..894 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:11 Download gff for BO07669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8373984..8374125 895..1038 98   Plus
arm_2L 8372598..8372625 17..44 100 -> Plus
arm_2L 8372687..8372753 45..111 100 -> Plus
arm_2L 8372881..8373288 112..519 100 -> Plus
arm_2L 8373540..8373914 520..894 99 -> Plus

BO07669.pep Sequence

Translation from 16 to 1054

> BO07669.pep
MHKAIKNKSRLLCGLKNSKADLTTAKFILYYGPTVADSDIYDLTDFQSLL
EDEHLDLGKNTVLYLHGYLEDPDVESIHVIAEAYLERKDTNLIVLDWGEL
ADGNYMFDAFPNLKQLGPELAKVLLKMFDHGLDIEKFHIVGHSMGGQLAG
LLGREITKRTKGVRKIKRISALDPAFPLFYPGTHLSANDAEFVDVIHTDA
WLYGAPTSTGTADFWPNGGYSLQPGCPKRNYKMLSDNDLSSHRRSWWFWA
ESVSDRYPIGFDAVPAKKWSDFKQNKIVENCPPVVMGHHCPTTIHGDFYL
QTNGHTPFARGKEGTVYVDPKDLLGNTHSITCDCPSEKTNASFLDH

BO07669.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17292-PD 340 CG17292-PD 1..340 1..340 1854 100 Plus
CG17292-PC 340 CG17292-PC 1..340 1..340 1854 100 Plus
CG17292-PB 340 CG17292-PB 1..340 1..340 1854 100 Plus
CG17292-PA 340 CG17292-PA 1..340 1..340 1854 100 Plus
CG6472-PB 389 CG6472-PB 45..337 26..318 397 35.3 Plus