Clone Sequence Records
BO07672.3prime Sequence
821 bp (798 high quality bases) assembled on 2006-01-06
> BO07672.3prime
ATGGTCTAGAAAGCTTGCTTTGGCAGCAACGGCATTCTTGGCCAGGGCAC
CCTCCAGGTTCTTGGCCAGCGTGTTAATGAACTCAAAAGTCTCCTGGTAG
TCCCTGCGAGTAACGGCGTTGATGTTGCCTTTAATGCAGATGGCCAGATC
CTTGGTCATGGCGCCGCTCTCAATTGTGTCGATGCACACCTGCTCAAGGG
TGTCGGCGAACTGCTTCAGTGGCTCATTGTTGTCCAGCTTGGCACGATGC
AGCAGGCCACGGGTCCAGGCGAATATCGAGGCAATGGGGTTGGTGGAGGT
CTCCTTGCCCTGCTGGTAGAAGCGGAAGTGACGCGTCACCGTTCCGTGAG
CGGCTTCAGCCTCCACGGTCTTGCCATCGGGGCATAGCAGCACGGAGGTC
ATCAGACCCAGAGATCCGTAGCCCTGGGCAACGGAGTCCGACTGCACATC
ACCGTCGTAGTTCTTGCAGGCCCACACGAAGCCACCCTCCGACTTCATGG
CATAAGCAACCATATCGTCGATGAGACGGTGTTCATACCAGATGCCCGCC
GCCTCGTACTCCTTCTTGTACTGCTTGTTGTACAGGTCCTCGAATATGTC
CTTGAAGCGTCCATCGTACTTCTTCAGAATGGTGTTCTTGGTGCTCATGT
ACAGCGGCAGCTTGCGGTCCAGAGCATATTTGAAAGAGGCGTGGGCAAAG
TCCACAATGGAATCGTCCGTGTTGAACATTCCCAGGGCAATACCGGGGCC
CTTGAAGTCATTAATGACCTCATCGATCACCTGACCGTCGGTTCCCTTCC
AGGTGAGGGTCAGCTTGCCGG
BO07672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7176-PA | 1251 | Idh-RA | 446..1248 | 821..19 | 4015 | 100 | Minus |
| CG7176-PF | 1251 | Idh-RF | 446..1248 | 821..19 | 4015 | 100 | Minus |
| CG7176-PB | 1353 | Idh-RB | 548..1350 | 821..19 | 4015 | 100 | Minus |
| CG7176-PC | 1410 | Idh-RC | 605..1407 | 821..19 | 4015 | 100 | Minus |
| CG7176-PD | 1314 | Idh-RD | 509..1311 | 821..19 | 4015 | 100 | Minus |
| CG7176-PE | 1251 | Idh-RE | 446..1248 | 821..19 | 4015 | 100 | Minus |
| CG7176-PG | 1353 | Idh-RG | 548..1350 | 821..19 | 4015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RK | 1974 | CG7176-RK | 918..1720 | 821..19 | 4015 | 100 | Minus |
| Idh-RJ | 1899 | CG7176-RJ | 843..1645 | 821..19 | 4015 | 100 | Minus |
| Idh-RI | 1776 | CG7176-RI | 720..1522 | 821..19 | 4015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8356658..8357460 | 19..821 | 4015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:16:24 has no hits.
BO07672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:51 Download gff for
BO07672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-PB | 548..1353 | 16..821 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:52 Download gff for
BO07672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7176-PG | 548..1353 | 16..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:03 Download gff for
BO07672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RI | 720..1527 | 12..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:27:25 Download gff for
BO07672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RI | 720..1527 | 12..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:27:25 Download gff for
BO07672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8356653..8357460 | 12..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:03 Download gff for
BO07672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8349753..8350560 | 12..821 | 99 | | Plus |
BO07672.5prime Sequence
908 bp (817 high quality bases) assembled on 2006-01-06
> BO07672.5prime
GAAGTTATCAGTCGACATGTTCGCCCTGCGCCGCACAGCCGCAATGATGA
CGTCGGTCCACCGGCAGCCGCATCTCAGCCAGGCCGTTTTTCGGGCCAAT
TTCGCCATCAGCGCCGCGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGT
GGATGTCCTCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGA
GCCAACTGATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTT
GGTATTGAGAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGC
TGAGGCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTC
CCGACGAGAAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCG
CCCAACGGTACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGC
AATCATCTGCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTA
TTGTGATCGGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTAC
GTGGTTCCCGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGG
TCAGGTGATCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCC
TGGGAATGTTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCT
TTCAAATATGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAA
CACCATTCTGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACC
TGTACAACAAGCAGTACAAGAAGGAGTACGAGGCGGCGGGCATCTGGTAT
GAACACCGTCTCATCGACGATATGGGTGCTTATGCCATGAAGTCGGAGGG
TGGCTTCG
BO07672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7176-PB | 1353 | Idh-RB | 1..892 | 17..908 | 4435 | 99.8 | Plus |
| CG7176-PG | 1353 | Idh-RG | 1..892 | 17..908 | 4435 | 99.8 | Plus |
| CG7176-PC | 1410 | Idh-RC | 159..949 | 118..908 | 3930 | 99.8 | Plus |
| CG7176-PD | 1314 | Idh-RD | 63..853 | 118..908 | 3930 | 99.8 | Plus |
| CG7176-PA | 1251 | Idh-RA | 1..790 | 119..908 | 3925 | 99.8 | Plus |
| CG7176-PF | 1251 | Idh-RF | 1..790 | 119..908 | 3925 | 99.8 | Plus |
| CG7176-PE | 1251 | Idh-RE | 1..790 | 119..908 | 3925 | 99.8 | Plus |
| CG7176-PC | 1410 | Idh-RC | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1899 | CG7176-RJ | 296..1187 | 17..908 | 4445 | 99.9 | Plus |
| Idh-RI | 1776 | CG7176-RI | 173..1064 | 17..908 | 4445 | 99.9 | Plus |
| Idh-RG | 1809 | CG7176-RG | 206..1097 | 17..908 | 4445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8357116..8357906 | 908..118 | 3940 | 99.9 | Minus |
| 3L | 28110227 | 3L | 8358556..8358657 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:04:24 has no hits.
BO07672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:51 Download gff for
BO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-PB | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:54 Download gff for
BO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7176-PG | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:05 Download gff for
BO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1097 | 11..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:32 Download gff for
BO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1097 | 11..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:32 Download gff for
BO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8357116..8357905 | 119..908 | 99 | <- | Minus |
| 3L | 8358556..8358662 | 11..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:05 Download gff for
BO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8350216..8351005 | 119..908 | 99 | <- | Minus |
| arm_3L | 8351656..8351762 | 11..118 | 97 | | Minus |
BO07672.complete Sequence
1384 bp (1384 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630889
> BO07672.complete
GAAGTTATCAGTCGACATGTTCGCCCTGCGCCGCACAGCCGCAATGATGA
CGTCGGTCCACCGGCAGCCGCATCTCAGCCAGGCCGTTTTTCGGGCCAAT
TTCGCCATCAGCGCCGCGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGT
GGATGTCCTCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGA
GCCAACTGATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTT
GGTATTGAGAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGC
TGAGGCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTC
CCGACGAGAAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCG
CCCAACGGTACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGC
AATCATCTGCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTA
TTGTGATCGGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTAC
GTGGTTCCCGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGG
TCAGGTGATCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCC
TGGGAATGTTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCT
TTCAAATATGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAA
CACCATTCTGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACC
TGTACAACAAGCAGTACAAGAAGGAGTACGAGGCGGCGGGCATCTGGTAT
GAACACCGTCTCATCGACGATATGGTTGCTTATGCCATGAAGTCGGAGGG
TGGCTTCGTGTGGGCCTGCAAGAACTACGACGGTGATGTGCAGTCGGACT
CCGTTGCCCAGGGCTACGGATCTCTGGGTCTGATGACCTCCGTGCTGCTA
TGCCCCGATGGCAAGACCGTGGAGGCTGAAGCCGCTCACGGAACGGTGAC
GCGTCACTTCCGCTTCTACCAGCAGGGCAAGGAGACCTCCACCAACCCCA
TTGCCTCGATATTCGCCTGGACCCGTGGCCTGCTGCATCGTGCCAAGCTG
GACAACAATGAGCCACTGAAGCAGTTCGCCGACACCCTTGAGCAGGTGTG
CATCGACACAATTGAGAGCGGCGCCATGACCAAGGATCTGGCCATCTGCA
TTAAAGGCAACATCAACGCCGTTACTCGCAGGGACTACCAGGAGACTTTT
GAGTTCATTAACACGCTGGCCAAGAACCTGGAGGGTGCCCTGGCCAAGAA
TGCCGTTGCTGCCAAAGCAAGCTTTCTAGACCAT
BO07672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1353 | CG7176-PJ | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| Idh-RI | 1353 | CG7176-PI | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| Idh-RG | 1353 | CG7176-PG | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1899 | CG7176-RJ | 296..1645 | 17..1366 | 6750 | 100 | Plus |
| Idh-RI | 1776 | CG7176-RI | 173..1522 | 17..1366 | 6750 | 100 | Plus |
| Idh-RG | 1809 | CG7176-RG | 206..1555 | 17..1366 | 6750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8356658..8357906 | 1366..118 | 6245 | 100 | Minus |
| 3L | 28110227 | 3L | 8358556..8358657 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:09 has no hits.
BO07672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:18 Download gff for
BO07672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 1..1353 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:03 Download gff for
BO07672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1560 | 11..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:20 Download gff for
BO07672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 211..1555 | 22..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:18 Download gff for
BO07672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1560 | 11..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:17 Download gff for
BO07672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 211..1555 | 22..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:17 Download gff for
BO07672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8356654..8357905 | 119..1368 | 99 | <- | Minus |
| 3L | 8358556..8358652 | 22..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:20 Download gff for
BO07672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8349754..8351005 | 119..1368 | 99 | <- | Minus |
| arm_3L | 8351656..8351752 | 22..118 | 100 | | Minus |
BO07672.pep Sequence
Translation from 16 to 1384
> BO07672.pep
MFALRRTAAMMTSVHRQPHLSQAVFRANFAISAAMAQKIKAGPVVDVLGD
EMTRIIWDSIKSQLILPFLDIELHTYDLGIENRDKTEDQVTIDCAEAIKK
YNVGIKCATITPDEKRVEEFNLKKMWKSPNGTIRNILGGTVFREAIICKN
VPRLVTGWQKPIVIGRHAHADQYKAVDYVVPGPGKLTLTWKGTDGQVIDE
VINDFKGPGIALGMFNTDDSIVDFAHASFKYALDRKLPLYMSTKNTILKK
YDGRFKDIFEDLYNKQYKKEYEAAGIWYEHRLIDDMVAYAMKSEGGFVWA
CKNYDGDVQSDSVAQGYGSLGLMTSVLLCPDGKTVEAEAAHGTVTRHFRF
YQQGKETSTNPIASIFAWTRGLLHRAKLDNNEPLKQFADTLEQVCIDTIE
SGAMTKDLAICIKGNINAVTRRDYQETFEFINTLAKNLEGALAKNAVAAK
ASFLDH
BO07672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-PJ | 450 | CG7176-PJ | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PI | 450 | CG7176-PI | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PG | 450 | CG7176-PG | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PB | 450 | CG7176-PB | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PC | 469 | CG7176-PC | 1..469 | 1..450 | 2327 | 95.9 | Plus |
