Clone Sequence Records
BO07673.3prime Sequence
890 bp (807 high quality bases) assembled on 2006-01-06
> BO07673.3prime
ATGGTCTAGAAAGCTTGCTTGTTCCTCCTCCTCGATATTGTAAAAGTGGG
GCCATGTCTGTATCTCCTCGTACAATCGCCGACCAGGACTCTCCGTCGAA
TTGCACTGGCAGTGACAAATTAATCTATAGTCGGTGGATATGTGACCATC
CTCAACGCCGCGGGCCAACAGATTGCGGCACATATTCAAGGCGTCTGCCG
TCGGGAGTTCTTTCATGAAGCATCCAATGAAACTGATCCCCAGCGAGATC
CTGTTGTAACCCAGAGTGTGGGCGCCCACCGTTTTCCATCCGCGTCCCTC
GTAGATGTTGCCATCGCAGCCGACCAGGAAGTTGTACGCAATGTCATTCC
ATCCCCGCGACTCAATGTGGAAGCACTGCATGTCACGGATAAGTCTTACG
TTGATCGCCCGCTTTTCTGAACTCTCTGTAGCTGTGTGTAAGATAACCAC
ATATTTAACAGGCAGTTGCAAGGGCAGTGGCTCGTCCATGGGCTTCTGTG
CTAGCCACGAAGAGCGCGGAATGATGGCGGACAGCTCCTTGGGTATTTTG
AATTTCTGGCGCCTGATGAACACATCCGAGCGCACCCTCTCCTCCGACTC
GTCCTGATAGTCGTCTTCGAAATGTGTCGGAGTTTTGGGAGCGTTATCTC
TCGGTGGTGAAACATGCCGCCGATCTCTTCGGTTTTGAGTAAGGCCATCG
GCTATGATTTGTATATTTCCATTAATATTGGTAACATTGCCGATATGGAC
GTTCGTGGAGTTGCTTATATTAACGTTGCCCAAAGTCTGAATGCTGTTGA
TCGAGTTCATAAGGTCCCTTATGGTGTCGCTGATGATCGAATGCTTTTTG
GTAGCGATTTGAGTGCCTAGTGTCATAGTGCTGATTTCTT
BO07673.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8995-PA | 1038 | PGRP-LE-RA | 164..1035 | 890..19 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 2073 | CG8995-RB | 1101..1972 | 890..19 | 4360 | 100 | Minus |
PGRP-LE-RA | 1398 | CG8995-RA | 426..1297 | 890..19 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15801254..15801613 | 19..378 | 1800 | 100 | Plus |
X | 23542271 | X | 15802140..15802440 | 555..855 | 1505 | 100 | Plus |
X | 23542271 | X | 15801963..15802076 | 441..554 | 570 | 100 | Plus |
X | 23542271 | X | 15801683..15801747 | 376..440 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:34:17 has no hits.
BO07673.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:52 Download gff for
BO07673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 164..1038 | 16..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:55 Download gff for
BO07673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 164..1038 | 16..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:27 Download gff for
BO07673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 426..1297 | 19..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:32 Download gff for
BO07673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 426..1297 | 19..890 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:32 Download gff for
BO07673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15801683..15801747 | 376..440 | 100 | <- | Plus |
X | 15801963..15802076 | 441..554 | 100 | <- | Plus |
X | 15802140..15802439 | 555..854 | 100 | <- | Plus |
X | 15802509..15802544 | 855..890 | 100 | | Plus |
X | 15801254..15801610 | 19..375 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:27 Download gff for
BO07673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15696542..15696577 | 855..890 | 100 | | Plus |
arm_X | 15695287..15695643 | 19..375 | 100 | <- | Plus |
arm_X | 15695716..15695780 | 376..440 | 100 | <- | Plus |
arm_X | 15696173..15696472 | 555..854 | 100 | <- | Plus |
arm_X | 15695996..15696109 | 441..554 | 100 | <- | Plus |
BO07673.5prime Sequence
853 bp (838 high quality bases) assembled on 2006-01-06
> BO07673.5prime
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTC
BO07673.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8995-PA | 1038 | PGRP-LE-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 2073 | CG8995-RB | 935..1774 | 14..853 | 4200 | 100 | Plus |
PGRP-LE-RA | 1398 | CG8995-RA | 260..1099 | 14..853 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15802140..15802440 | 515..215 | 1505 | 100 | Minus |
X | 23542271 | X | 15802509..15802710 | 215..14 | 1010 | 100 | Minus |
X | 23542271 | X | 15801452..15801613 | 853..692 | 810 | 100 | Minus |
X | 23542271 | X | 15801963..15802076 | 629..516 | 570 | 100 | Minus |
X | 23542271 | X | 15801683..15801747 | 694..630 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:28:42 has no hits.
BO07673.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:53 Download gff for
BO07673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:56 Download gff for
BO07673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:54 Download gff for
BO07673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 256..1099 | 6..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:08 Download gff for
BO07673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 256..1099 | 6..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:08 Download gff for
BO07673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15801452..15801610 | 695..853 | 100 | <- | Minus |
X | 15801683..15801747 | 630..694 | 100 | <- | Minus |
X | 15801963..15802076 | 516..629 | 100 | <- | Minus |
X | 15802140..15802439 | 216..515 | 100 | <- | Minus |
X | 15802509..15802714 | 6..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:54 Download gff for
BO07673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15695485..15695643 | 695..853 | 100 | <- | Minus |
arm_X | 15695716..15695780 | 630..694 | 100 | <- | Minus |
arm_X | 15695996..15696109 | 516..629 | 100 | <- | Minus |
arm_X | 15696173..15696472 | 216..515 | 100 | <- | Minus |
arm_X | 15696542..15696747 | 6..215 | 98 | | Minus |
BO07673.complete Sequence
1069 bp (1069 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630890
> BO07673.complete
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTCATGAAAGAACTCCCGACGGCAGACGCCTTGAATATGTGCCGCAATCT
GTTGGCCCGCGGCGTTGAGGATGGTCACATATCCACCGACTATAGATTAA
TTTGTCACTGCCAGTGCAATTCGACGGAGAGTCCTGGTCGGCGATTGTAC
GAGGAGATACAGACATGGCCCCACTTTTACAATATCGAGGAGGAGGAACA
AGCAAGCTTTCTAGACCAT
BO07673.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 1038 | CG8995-PB | 1..1035 | 17..1051 | 5175 | 100 | Plus |
PGRP-LE-RA | 1038 | CG8995-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 2073 | CG8995-RB | 935..1972 | 14..1051 | 5190 | 100 | Plus |
PGRP-LE-RA | 1398 | CG8995-RA | 260..1297 | 14..1051 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15801254..15801613 | 1051..692 | 1800 | 100 | Minus |
X | 23542271 | X | 15802140..15802440 | 515..215 | 1505 | 100 | Minus |
X | 23542271 | X | 15802509..15802710 | 215..14 | 1010 | 100 | Minus |
X | 23542271 | X | 15801963..15802076 | 629..516 | 570 | 100 | Minus |
X | 23542271 | X | 15801683..15801747 | 694..630 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:26:39 has no hits.
BO07673.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:19 Download gff for
BO07673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 1..1038 | 17..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:05 Download gff for
BO07673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 212..1253 | 6..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:17 Download gff for
BO07673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 263..1297 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:19 Download gff for
BO07673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 212..1253 | 6..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:39 Download gff for
BO07673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 263..1297 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:39 Download gff for
BO07673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15801251..15801610 | 695..1053 | 99 | <- | Minus |
X | 15801683..15801747 | 630..694 | 100 | <- | Minus |
X | 15801963..15802076 | 516..629 | 100 | <- | Minus |
X | 15802140..15802439 | 216..515 | 100 | <- | Minus |
X | 15802509..15802707 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:17 Download gff for
BO07673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15695284..15695643 | 695..1053 | 99 | <- | Minus |
arm_X | 15695716..15695780 | 630..694 | 100 | <- | Minus |
arm_X | 15695996..15696109 | 516..629 | 100 | <- | Minus |
arm_X | 15696173..15696472 | 216..515 | 100 | <- | Minus |
arm_X | 15696542..15696740 | 17..215 | 100 | | Minus |
BO07673.pep Sequence
Translation from 16 to 1069
> BO07673.pep
MSESGIKKLSQERTREWLASQEDEELESIAESSVVDSLDYDYTEEEEDAD
QNTSEEISTMTLGTQIATKKHSIISDTIRDLMNSINSIQTLGNVNISNST
NVHIGNVTNINGNIQIIADGLTQNRRDRRHVSPPRDNAPKTPTHFEDDYQ
DESEERVRSDVFIRRQKFKIPKELSAIIPRSSWLAQKPMDEPLPLQLPVK
YVVILHTATESSEKRAINVRLIRDMQCFHIESRGWNDIAYNFLVGCDGNI
YEGRGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNLLARGV
EDGHISTDYRLICHCQCNSTESPGRRLYEEIQTWPHFYNIEEEEQASFLD
H
BO07673.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-PB | 345 | CG8995-PB | 1..345 | 1..345 | 1813 | 100 | Plus |
PGRP-LE-PA | 345 | CG8995-PA | 1..345 | 1..345 | 1813 | 100 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 184..325 | 196..337 | 382 | 52.1 | Plus |
PGRP-LC-PD | 500 | CG4432-PD | 355..496 | 196..337 | 382 | 52.1 | Plus |
PGRP-LC-PA | 500 | CG4432-PA | 355..496 | 196..337 | 382 | 52.1 | Plus |