Clone BO07673 Report

Search the DGRC for BO07673

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LE-RA
Protein status:BO07673.pep: validated full length
Sequenced Size:1069

Clone Sequence Records

BO07673.3prime Sequence

890 bp (807 high quality bases) assembled on 2006-01-06

> BO07673.3prime
ATGGTCTAGAAAGCTTGCTTGTTCCTCCTCCTCGATATTGTAAAAGTGGG
GCCATGTCTGTATCTCCTCGTACAATCGCCGACCAGGACTCTCCGTCGAA
TTGCACTGGCAGTGACAAATTAATCTATAGTCGGTGGATATGTGACCATC
CTCAACGCCGCGGGCCAACAGATTGCGGCACATATTCAAGGCGTCTGCCG
TCGGGAGTTCTTTCATGAAGCATCCAATGAAACTGATCCCCAGCGAGATC
CTGTTGTAACCCAGAGTGTGGGCGCCCACCGTTTTCCATCCGCGTCCCTC
GTAGATGTTGCCATCGCAGCCGACCAGGAAGTTGTACGCAATGTCATTCC
ATCCCCGCGACTCAATGTGGAAGCACTGCATGTCACGGATAAGTCTTACG
TTGATCGCCCGCTTTTCTGAACTCTCTGTAGCTGTGTGTAAGATAACCAC
ATATTTAACAGGCAGTTGCAAGGGCAGTGGCTCGTCCATGGGCTTCTGTG
CTAGCCACGAAGAGCGCGGAATGATGGCGGACAGCTCCTTGGGTATTTTG
AATTTCTGGCGCCTGATGAACACATCCGAGCGCACCCTCTCCTCCGACTC
GTCCTGATAGTCGTCTTCGAAATGTGTCGGAGTTTTGGGAGCGTTATCTC
TCGGTGGTGAAACATGCCGCCGATCTCTTCGGTTTTGAGTAAGGCCATCG
GCTATGATTTGTATATTTCCATTAATATTGGTAACATTGCCGATATGGAC
GTTCGTGGAGTTGCTTATATTAACGTTGCCCAAAGTCTGAATGCTGTTGA
TCGAGTTCATAAGGTCCCTTATGGTGTCGCTGATGATCGAATGCTTTTTG
GTAGCGATTTGAGTGCCTAGTGTCATAGTGCTGATTTCTT

BO07673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8995-PA 1038 PGRP-LE-RA 164..1035 890..19 4360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 2073 CG8995-RB 1101..1972 890..19 4360 100 Minus
PGRP-LE-RA 1398 CG8995-RA 426..1297 890..19 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15801254..15801613 19..378 1800 100 Plus
X 23542271 X 15802140..15802440 555..855 1505 100 Plus
X 23542271 X 15801963..15802076 441..554 570 100 Plus
X 23542271 X 15801683..15801747 376..440 325 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:34:17 has no hits.

BO07673.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:52 Download gff for BO07673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 164..1038 16..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:55 Download gff for BO07673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 164..1038 16..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:27 Download gff for BO07673.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 426..1297 19..890 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:32 Download gff for BO07673.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 426..1297 19..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:32 Download gff for BO07673.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15801683..15801747 376..440 100 <- Plus
X 15801963..15802076 441..554 100 <- Plus
X 15802140..15802439 555..854 100 <- Plus
X 15802509..15802544 855..890 100   Plus
X 15801254..15801610 19..375 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:27 Download gff for BO07673.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15696542..15696577 855..890 100   Plus
arm_X 15695287..15695643 19..375 100 <- Plus
arm_X 15695716..15695780 376..440 100 <- Plus
arm_X 15696173..15696472 555..854 100 <- Plus
arm_X 15695996..15696109 441..554 100 <- Plus

BO07673.5prime Sequence

853 bp (838 high quality bases) assembled on 2006-01-06

> BO07673.5prime
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTC

BO07673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8995-PA 1038 PGRP-LE-RA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 2073 CG8995-RB 935..1774 14..853 4200 100 Plus
PGRP-LE-RA 1398 CG8995-RA 260..1099 14..853 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15802140..15802440 515..215 1505 100 Minus
X 23542271 X 15802509..15802710 215..14 1010 100 Minus
X 23542271 X 15801452..15801613 853..692 810 100 Minus
X 23542271 X 15801963..15802076 629..516 570 100 Minus
X 23542271 X 15801683..15801747 694..630 325 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:28:42 has no hits.

BO07673.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:53 Download gff for BO07673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:10:56 Download gff for BO07673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:54 Download gff for BO07673.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 256..1099 6..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:08 Download gff for BO07673.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 256..1099 6..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:08 Download gff for BO07673.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15801452..15801610 695..853 100 <- Minus
X 15801683..15801747 630..694 100 <- Minus
X 15801963..15802076 516..629 100 <- Minus
X 15802140..15802439 216..515 100 <- Minus
X 15802509..15802714 6..215 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:54 Download gff for BO07673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15695485..15695643 695..853 100 <- Minus
arm_X 15695716..15695780 630..694 100 <- Minus
arm_X 15695996..15696109 516..629 100 <- Minus
arm_X 15696173..15696472 216..515 100 <- Minus
arm_X 15696542..15696747 6..215 98   Minus

BO07673.complete Sequence

1069 bp (1069 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630890

> BO07673.complete
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTCATGAAAGAACTCCCGACGGCAGACGCCTTGAATATGTGCCGCAATCT
GTTGGCCCGCGGCGTTGAGGATGGTCACATATCCACCGACTATAGATTAA
TTTGTCACTGCCAGTGCAATTCGACGGAGAGTCCTGGTCGGCGATTGTAC
GAGGAGATACAGACATGGCCCCACTTTTACAATATCGAGGAGGAGGAACA
AGCAAGCTTTCTAGACCAT

BO07673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 1038 CG8995-PB 1..1035 17..1051 5175 100 Plus
PGRP-LE-RA 1038 CG8995-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 2073 CG8995-RB 935..1972 14..1051 5190 100 Plus
PGRP-LE-RA 1398 CG8995-RA 260..1297 14..1051 5190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15801254..15801613 1051..692 1800 100 Minus
X 23542271 X 15802140..15802440 515..215 1505 100 Minus
X 23542271 X 15802509..15802710 215..14 1010 100 Minus
X 23542271 X 15801963..15802076 629..516 570 100 Minus
X 23542271 X 15801683..15801747 694..630 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:26:39 has no hits.

BO07673.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:19 Download gff for BO07673.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1038 17..1054 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:05 Download gff for BO07673.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 212..1253 6..1051 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:17 Download gff for BO07673.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 263..1297 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:19 Download gff for BO07673.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 212..1253 6..1051 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:39 Download gff for BO07673.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 263..1297 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:39 Download gff for BO07673.complete
Subject Subject Range Query Range Percent Splice Strand
X 15801251..15801610 695..1053 99 <- Minus
X 15801683..15801747 630..694 100 <- Minus
X 15801963..15802076 516..629 100 <- Minus
X 15802140..15802439 216..515 100 <- Minus
X 15802509..15802707 17..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:17 Download gff for BO07673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15695284..15695643 695..1053 99 <- Minus
arm_X 15695716..15695780 630..694 100 <- Minus
arm_X 15695996..15696109 516..629 100 <- Minus
arm_X 15696173..15696472 216..515 100 <- Minus
arm_X 15696542..15696740 17..215 100   Minus

BO07673.pep Sequence

Translation from 16 to 1069

> BO07673.pep
MSESGIKKLSQERTREWLASQEDEELESIAESSVVDSLDYDYTEEEEDAD
QNTSEEISTMTLGTQIATKKHSIISDTIRDLMNSINSIQTLGNVNISNST
NVHIGNVTNINGNIQIIADGLTQNRRDRRHVSPPRDNAPKTPTHFEDDYQ
DESEERVRSDVFIRRQKFKIPKELSAIIPRSSWLAQKPMDEPLPLQLPVK
YVVILHTATESSEKRAINVRLIRDMQCFHIESRGWNDIAYNFLVGCDGNI
YEGRGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNLLARGV
EDGHISTDYRLICHCQCNSTESPGRRLYEEIQTWPHFYNIEEEEQASFLD
H

BO07673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-PB 345 CG8995-PB 1..345 1..345 1813 100 Plus
PGRP-LE-PA 345 CG8995-PA 1..345 1..345 1813 100 Plus
PGRP-LC-PE 329 CG4432-PE 184..325 196..337 382 52.1 Plus
PGRP-LC-PD 500 CG4432-PD 355..496 196..337 382 52.1 Plus
PGRP-LC-PA 500 CG4432-PA 355..496 196..337 382 52.1 Plus