Clone Sequence Records
BO07675.3prime Sequence
973 bp (872 high quality bases) assembled on 2006-01-06
> BO07675.3prime
ATGGTCTAGAAAGCTTGCTTCGATTGGATGGCTCGTGGGTACGAGCAGTT
CCTTGATCTCATTGAGTTGGATCTCGCGACCCCGCGTGATTTCCGGACGG
GACCACATTTCAGCGTGGTACAATTCTAAGAACTTGGCCTCCGCCTTTTC
GCGGCACGGACAAAAATCGAAGTAGGAGGTCTGGCTGCAGACCTCCCGAT
CCTCGAACTTAGTGAAGATGGTGCCGCGCTGTACGCATCGGCAAACCTTG
ACATTGGTGTGCTGCTGGTTTGGGGCAAAGGAGCGTTGCTTCCACGGACA
CATGCAGCAGCCACAGTTGCCGGGACAAAACACATTGCCTTCCTCGTCCA
TAATAGGACTGGGATCGAAACGGCACGGCGAACAGTTGGAGAACTCCTTG
TTTTGAGGCAGGGCAAGGTAGTACCGCTTGCTTCCCGGCGATCTTTCCGG
CGGCGGCGGTCCCATTTCTTCTTCCGGCTGCGGTCCTAACATCTCCTGCT
CGCTAGACAAGAGCTCATCGGATTCATCCGACTCGGTGATCGGGTGTTCC
GGCTCTGGAGCATAGATTATCAAGTGCTCCTTCGGGGCCGTTGGTTCTAT
CTCCACCAACGGTTCTTCAATTGGCAGTGGCTCAGGCACTGGGGTAAGAG
TGAGCTCTGATTCGATATCCGGCAAGGTCAGGCAGGAGATTGAGATGACC
TCCCGTGCCCCCGGGTCGTGCCAGCGGCAACATGTGGCCGGAGTGCAACG
GTTACACTGAGATGTTGAATCCCCACAGCTTCCTATGTATACCGAACTGG
CGGACCCTTCGGCTAGCTGTTGCGATGCACATGGACGAAAGTGTTTGCTG
GCGGATTTACCTGAGCTGGGCTTTGGAGCCCTTGGACCGGAACGCATATA
CTGCTGCGAGCGGCACTGGCAGATGGACTCTTTGCGATGCCTGGTGACCG
GTTGTTTCTTTTGCTGACACTTG
BO07675.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33191-PA | 1431 | CG33191-RA | 474..1428 | 973..19 | 4775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33191-RA | 1545 | CG33191-RA | 561..1515 | 973..19 | 4775 | 100 | Minus |
| Pif1B-RB | 4148 | CG33720-RB | 569..681 | 973..861 | 565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8778409..8779363 | 19..973 | 4775 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 14:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5698..5738 | 274..236 | 110 | 78 | Minus |
BO07675.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:56 Download gff for
BO07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-PA | 474..1431 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:00 Download gff for
BO07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-PA | 474..1431 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:51 Download gff for
BO07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 561..1518 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:24 Download gff for
BO07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 561..1518 | 15..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:24 Download gff for
BO07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8778405..8779363 | 15..973 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:51 Download gff for
BO07675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4604127..4605085 | 15..973 | 99 | | Plus |
BO07675.5prime Sequence
874 bp (830 high quality bases) assembled on 2006-01-06
> BO07675.5prime
GAAGTTATCAGTCGACATGGACGAGGAATTCTCTAATCAGCCCATCGATC
CAAGCATCGCTCGGAGTGACTACTCCCGGAGTCATTTCGTTAACCAGAGC
TCCATGACATTGAGTCGCGGATTGGACTCCACCCGACTGCTTTTCGTAGG
CGAAAACTTCCAGCAGACGCGCAGCGAACAGGACTTATTTTACGACTGTC
AAGGTCCGGGTGAGGACTCGCCAAAGGAGGGCCGTAGTGCCACCAGCCGG
TGCAAGTTCGATGATCCGGCTGCGATACGGGATGCCCTGGAACGGGCGGC
CAATGCCACACAGATGCTACTCAAGAATTTTGACAAGTCAGGTGGTTGGA
ATCAGCCATGTGCCGTCACCCTGGAGTTGACCGCTCGGTTGGTGGACCCC
AAGAAGGGTCGCGCTGGTTGTCCGTTGCACGGAAAGCCCGTCACCGTCCA
GATGCCGCTGGAGTTCAATCCGCAGAGCGGCAAGATGGTCAAGTGTCAGC
AAAAGAAACAACCGGTCACCAGGCATCGCAAAGAGTCCATCTGCCAGTGC
CGCTCGCAGCAGTATATGCGTTCCGGTCCAAGGGCTCCAAAGCCCAGCTC
AGGTAAATCCGCCAGCAAACACTTTCGTCCATGTGCATCGCAACAGCTAG
CCGAAGGGTCCGCCAGTTCGGTATACATAGGAAGCTGTGGGGATTCAACA
TCTCAGTGTAACCGTTGCACTCCGGCCACATGTTGCCGCTGGCACGACCC
GGGGGCACGGGAGGTCATCTCAATCTCCTGCCTGACCTTGCCGGATATCG
AATCAGAGCTCACTCTTACCCCAGTGCCTGAGCCACTGCCAATTGAAGAA
CCCGTGGTGGAGATAGAAACAACG
BO07675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33191-PA | 1431 | CG33191-RA | 1..858 | 17..874 | 4215 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33191-RA | 1545 | CG33191-RA | 88..945 | 17..874 | 4245 | 99.7 | Plus |
| Pif1B-RB | 4148 | CG33720-RB | 96..681 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8778979..8779836 | 874..17 | 4245 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:55:58 has no hits.
BO07675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:25:57 Download gff for
BO07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:02 Download gff for
BO07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:07 Download gff for
BO07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 78..945 | 5..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:37 Download gff for
BO07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 78..945 | 5..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:37 Download gff for
BO07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8778979..8779845 | 5..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:07 Download gff for
BO07675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4604701..4605567 | 5..874 | 99 | | Minus |
BO07675.complete Sequence
1462 bp (1462 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630892
> BO07675.complete
GAAGTTATCAGTCGACATGGACGAGGAATTCTCTAATCAGCCCATCGATC
CAAGCATCGCTCGGAGTGACTACTCCCGGAGTCATTTCGTTAACCAGAGC
TCCATGACATTGAGTCGCGGATTGGACTCCACCCGACTGCTTTTCGTAGG
CGAAAACTTCCAGCAGACGCGCAGCGAACAGGACTTATTTTACGACTGTC
AAGGTCCGGGTGAGGACTCGCCAAAGGAGGGCCGTAGTGCCACCAGCCGG
TGCAAGTTCGATGATCCGGCTGCGATACGGGATGCCCTGGAACGGGCGGC
CAATGCCACACAGATGCTACTCAAGAATTTTGACAAGTCAGGTGGTTGGA
ATCAGCCATGTGCCGTCACCCTGGAGTTGACCGCTCGGTTGGTGGACCCC
AAGAAGGGTCGCGCTGGTTGTCCGTTGCACGGAAAGCCCGTCACCGTCCA
GATGCCGCTGGAGTTCAATCCGCAGAGCGGCAAGATGGTCAAGTGTCAGC
AAAAGAAACAACCGGTCACCAGGCATCGCAAAGAGTCCATCTGCCAGTGC
CGCTCGCAGCAGTATATGCGTTCCGGTCCAAGGGCTCCAAAGCCCAGCTC
AGGTAAATCCGCCAGCAAACACTTTCGTCCATGTGCATCGCAACAGCTAG
CCGAAGGGTCCGCCAGTTCGGTATACATAGGAAGCTGTGGGGATTCAACA
TCTCAGTGTAACCGTTGCACTCCGGCCACATGTTGCCGCTGGCACGACCC
GGGGGCACGGGAGGTCATCTCAATCTCCTGCCTGACCTTGCCGGATATCG
AATCAGAGCTCACTCTTACCCCAGTGCCTGAGCCACTGCCAATTGAAGAA
CCGTTGGTGGAGATAGAACCAACGGCCCCGAAGGAGCACTTGATAATCTA
TGCTCCAGAGCCGGAACACCCGATCACCGAGTCGGATGAATCCGATGAGC
TCTTGTCTAGCGAGCAGGAGATGTTAGGACCGCAGCCGGAAGAAGAAATG
GGACCGCCGCCGCCGGAAAGATCGCCGGGAAGCAAGCGGTACTACCTTGC
CCTGCCTCAAAACAAGGAGTTCTCCAACTGTTCGCCGTGCCGTTTCGATC
CCAGTCCTATTATGGACGAGGAAGGCAATGTGTTTTGTCCCGGCAACTGT
GGCTGCTGCATGTGTCCGTGGAAGCAACGCTCCTTTGCCCCAAACCAGCA
GCACACCAATGTCAAGGTTTGCCGATGCGTACAGCGCGGCACCATCTTCA
CTAAGTTCGAGGATCGGGAGGTCTGCAGCCAGACCTCCTACTTCGATTTT
TGTCCGTGCCGCGAAAAGGCGGAGGCCAAGTTCTTAGAATTGTACCACGC
TGAAATGTGGTCCCGTCCGGAAATCACGCGGGGTCGCGAGATCCAACTCA
ATGAGATCAAGGAACTGCTCGTACCCACGAGCCATCCAATCGAAGCAAGC
TTTCTAGACCAT
BO07675.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33191-RA | 1431 | CG33191-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33191-RA | 1545 | CG33191-RA | 88..1515 | 17..1444 | 7140 | 100 | Plus |
| Pif1B-RB | 4148 | CG33720-RB | 96..681 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8778409..8779836 | 1444..17 | 7140 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:18:33 has no hits.
BO07675.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:02 Download gff for
BO07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 1..1431 | 17..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:44 Download gff for
BO07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 78..1518 | 5..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:48 Download gff for
BO07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 88..1515 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:02 Download gff for
BO07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 78..1518 | 5..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:12 Download gff for
BO07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33191-RA | 88..1515 | 17..1446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:12 Download gff for
BO07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8778407..8779836 | 17..1446 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:48 Download gff for
BO07675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4604129..4605558 | 17..1446 | 99 | | Minus |
BO07675.pep Sequence
Translation from 16 to 1462
> BO07675.pep
MDEEFSNQPIDPSIARSDYSRSHFVNQSSMTLSRGLDSTRLLFVGENFQQ
TRSEQDLFYDCQGPGEDSPKEGRSATSRCKFDDPAAIRDALERAANATQM
LLKNFDKSGGWNQPCAVTLELTARLVDPKKGRAGCPLHGKPVTVQMPLEF
NPQSGKMVKCQQKKQPVTRHRKESICQCRSQQYMRSGPRAPKPSSGKSAS
KHFRPCASQQLAEGSASSVYIGSCGDSTSQCNRCTPATCCRWHDPGAREV
ISISCLTLPDIESELTLTPVPEPLPIEEPLVEIEPTAPKEHLIIYAPEPE
HPITESDESDELLSSEQEMLGPQPEEEMGPPPPERSPGSKRYYLALPQNK
EFSNCSPCRFDPSPIMDEEGNVFCPGNCGCCMCPWKQRSFAPNQQHTNVK
VCRCVQRGTIFTKFEDREVCSQTSYFDFCPCREKAEAKFLELYHAEMWSR
PEITRGREIQLNEIKELLVPTSHPIEASFLDH
BO07675.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33191-PA | 476 | CG33191-PA | 1..476 | 1..476 | 2590 | 100 | Plus |
