Clone Sequence Records
BO07678.3prime Sequence
917 bp (847 high quality bases) assembled on 2006-01-06
> BO07678.3prime
ATGGTCTAGAAAGCTTGCCAACAGCCTCTCCAGATCCTCGCTCTCCGCGT
CGCTGATAAAGGAGTCGGTGTCCGTGAAATAATCGTCGTCGCACCTGTTC
CGGCGACAACAGACCCTGCGACCAATCTCCTCGTCGCTCCAGTGCTCAAA
TTCCTCCTTGTGGTGCTCCAGCAGCATTAGCGACGGGAACAAACTATCGC
AGCCACTGCAACCGAAGTGTCGCTTCTTCTGCTGGTGCGATGCCAACTGG
CGGTGACAATGGAAAGCTCGGTCGCACACGTTGCAGGTGAGTGATTCGTC
GTAGTCATCATCGTCATCCGCCATGGCCAGCGCATGCAGACGACTTATTG
TGTTTTCGTTAATCTCCTTCGATGTTGACGTGCTGCCTGCGCCGAGGTCC
TTTGATGTTTTGGCTTTCGCCTGGCACAATCCCAGCTCGCAGAGGGCGCT
CTCCACCTCGTAGTTGCCCTGGCAATCGGCATCCATGCAGGGCAGGAGTG
ACAGGTTCCCGTTTCCACTCCCGTTACCGTTCCCATTGCCGTTCCCACAG
CCTGCCGCTCCTGTGGATCCTAAGCCTGAACCCGAGCCCCCGTTGACATT
GACGTTGCCATTGGCTTCTCCTGGTACCTGACTGCTACAGCCGGCAGTGG
CGGAGTTCGCTGCCAGCATTTCAAAGTCGTCTAGCTCATCGAACGGATCA
TCGATTTTGTGGCCAAGTGAGACGGCATCGTCGGCCTCGGCACTCAGTCG
TCCATATGCCTTCCGTGGGGGCCTCTTCACATATTTGTCTTGTGTGCTGT
TGTTGTGATTACCGCCGTTTGAGTTGCTCTTGGAAAAGCTGCAGTTGTTG
TTGAAGGAGTTGAAGAAGTTGGCGGCACGGGTGCGCCGTAAAATCCAAAA
CATGTCGACTGATAACT
BO07678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-PA | 888 | CG11317-RA | 1..885 | 903..19 | 4400 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 1795 | CG11317-RA | 252..1137 | 904..19 | 4415 | 99.9 | Minus |
CG11317-RB | 1804 | CG11317-RB | 252..1146 | 904..19 | 4315 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31092055..31092545 | 300..790 | 2455 | 100 | Plus |
3R | 32079331 | 3R | 31091370..31091563 | 19..212 | 970 | 100 | Plus |
3R | 32079331 | 3R | 31096955..31097070 | 789..904 | 565 | 99.1 | Plus |
3R | 32079331 | 3R | 31091686..31091774 | 212..300 | 445 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 14:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6801 | 877..795 | 127 | 61.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 866..795 | 126 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 871..795 | 115 | 61 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2410 | 883..788 | 114 | 62.7 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..577 | 862..819 | 112 | 72.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6904 | 884..791 | 110 | 57.4 | Minus |
BO07678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:02 Download gff for
BO07678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 1..888 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:09 Download gff for
BO07678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 1..888 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:56 Download gff for
BO07678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 252..1140 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:31 Download gff for
BO07678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 252..1140 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:31 Download gff for
BO07678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31091366..31091562 | 15..211 | 98 | <- | Plus |
3R | 31091686..31091773 | 212..299 | 100 | <- | Plus |
3R | 31092055..31092543 | 300..788 | 100 | <- | Plus |
3R | 31096955..31097070 | 789..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:56 Download gff for
BO07678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26917088..26917284 | 15..211 | 98 | <- | Plus |
arm_3R | 26917408..26917495 | 212..299 | 100 | <- | Plus |
arm_3R | 26917777..26918265 | 300..788 | 100 | <- | Plus |
arm_3R | 26922677..26922792 | 789..904 | 99 | | Plus |
BO07678.5prime Sequence
857 bp (799 high quality bases) assembled on 2006-01-06
> BO07678.5prime
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACT
BO07678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-PA | 888 | CG11317-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 1795 | CG11317-RA | 252..1093 | 16..857 | 4210 | 100 | Plus |
CG11317-RB | 1804 | CG11317-RB | 252..1102 | 16..857 | 4110 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31092055..31092545 | 620..130 | 2455 | 100 | Minus |
3R | 32079331 | 3R | 31091414..31091563 | 857..708 | 750 | 100 | Minus |
3R | 32079331 | 3R | 31096955..31097070 | 131..16 | 580 | 100 | Minus |
3R | 32079331 | 3R | 31091686..31091774 | 708..620 | 445 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6801 | 43..125 | 127 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 54..125 | 126 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 49..125 | 115 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2410 | 37..132 | 114 | 62.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..577 | 58..101 | 112 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6904 | 36..129 | 110 | 57.4 | Plus |
BO07678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:03 Download gff for
BO07678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:12 Download gff for
BO07678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:11 Download gff for
BO07678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 252..1093 | 16..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:39 Download gff for
BO07678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 252..1093 | 16..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:39 Download gff for
BO07678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31091686..31091773 | 621..708 | 100 | <- | Minus |
3R | 31091414..31091562 | 709..857 | 100 | <- | Minus |
3R | 31092055..31092543 | 132..620 | 100 | <- | Minus |
3R | 31096955..31097070 | 16..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:11 Download gff for
BO07678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26917136..26917284 | 709..857 | 100 | <- | Minus |
arm_3R | 26917408..26917495 | 621..708 | 100 | <- | Minus |
arm_3R | 26917777..26918265 | 132..620 | 100 | <- | Minus |
arm_3R | 26922677..26922792 | 16..131 | 100 | | Minus |
BO07678.complete Sequence
919 bp (919 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630893
> BO07678.complete
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACTCCTTTATCAGCGACGCGGAGAGCGAGGATCTGGAGAGGCTGTT
GGCAAGCTTTCTAGACCAT
BO07678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 888 | CG11317-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
CG11317-RB | 897 | CG11317-PB | 1..894 | 17..901 | 4300 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-RA | 1795 | CG11317-RA | 252..1137 | 16..901 | 4430 | 100 | Plus |
CG11317-RB | 1804 | CG11317-RB | 252..1146 | 16..901 | 4305 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31092055..31092545 | 620..130 | 2455 | 100 | Minus |
3R | 32079331 | 3R | 31091370..31091563 | 901..708 | 970 | 100 | Minus |
3R | 32079331 | 3R | 31096955..31097070 | 131..16 | 580 | 100 | Minus |
3R | 32079331 | 3R | 31091686..31091774 | 708..620 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6801 | 43..125 | 127 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 54..125 | 126 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 49..125 | 115 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2410 | 37..132 | 114 | 62.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..577 | 58..101 | 112 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6904 | 36..129 | 110 | 57.4 | Plus |
BO07678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:03 Download gff for
BO07678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:46 Download gff for
BO07678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 249..1137 | 16..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:22 Download gff for
BO07678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 260..1137 | 24..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:04 Download gff for
BO07678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 249..1137 | 16..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:37 Download gff for
BO07678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11317-RA | 260..1137 | 24..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:37 Download gff for
BO07678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31091368..31091562 | 709..903 | 98 | <- | Minus |
3R | 31091686..31091773 | 621..708 | 100 | <- | Minus |
3R | 31092055..31092543 | 132..620 | 100 | <- | Minus |
3R | 31096955..31097062 | 24..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:22 Download gff for
BO07678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26917090..26917284 | 709..903 | 98 | <- | Minus |
arm_3R | 26917408..26917495 | 621..708 | 100 | <- | Minus |
arm_3R | 26917777..26918265 | 132..620 | 100 | <- | Minus |
arm_3R | 26922677..26922784 | 24..131 | 100 | | Minus |
BO07678.pep Sequence
Translation from 16 to 919
> BO07678.pep
MFWILRRTGAANFFNSFNNNCSFSKSNSNGGNHNNSTQDKYVKRPPRKAY
GRLSAEADDAVSLGHKIDDPFDELDDFEMLAANSATAGCSSQVPGEANGN
VNVNGGSGSGLGSTGAAGCGNGNGNGNGSGNGNLSLLPCMDADCQGNYEV
ESALCELGLCQAKAKTSKDLGAGSTSTSKEINENTISRLHALAMADDDDD
YDESLTCNVCDRAFHCHRQLASHQQKKRHFGCSGCDSLFPSLMLLEHHKE
EFEHWSDEEIGRRVCCRRNRCDDDYFTDTDSFISDAESEDLERLLASFLD
H
BO07678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11317-PA | 295 | CG11317-PA | 1..295 | 1..295 | 1601 | 100 | Plus |
CG11317-PB | 298 | CG11317-PB | 1..298 | 1..295 | 1587 | 99 | Plus |