Clone BO07678 Report

Search the DGRC for BO07678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG11317-RA
Protein status:BO07678.pep: validated full length
Sequenced Size:919

Clone Sequence Records

BO07678.3prime Sequence

917 bp (847 high quality bases) assembled on 2006-01-06

> BO07678.3prime
ATGGTCTAGAAAGCTTGCCAACAGCCTCTCCAGATCCTCGCTCTCCGCGT
CGCTGATAAAGGAGTCGGTGTCCGTGAAATAATCGTCGTCGCACCTGTTC
CGGCGACAACAGACCCTGCGACCAATCTCCTCGTCGCTCCAGTGCTCAAA
TTCCTCCTTGTGGTGCTCCAGCAGCATTAGCGACGGGAACAAACTATCGC
AGCCACTGCAACCGAAGTGTCGCTTCTTCTGCTGGTGCGATGCCAACTGG
CGGTGACAATGGAAAGCTCGGTCGCACACGTTGCAGGTGAGTGATTCGTC
GTAGTCATCATCGTCATCCGCCATGGCCAGCGCATGCAGACGACTTATTG
TGTTTTCGTTAATCTCCTTCGATGTTGACGTGCTGCCTGCGCCGAGGTCC
TTTGATGTTTTGGCTTTCGCCTGGCACAATCCCAGCTCGCAGAGGGCGCT
CTCCACCTCGTAGTTGCCCTGGCAATCGGCATCCATGCAGGGCAGGAGTG
ACAGGTTCCCGTTTCCACTCCCGTTACCGTTCCCATTGCCGTTCCCACAG
CCTGCCGCTCCTGTGGATCCTAAGCCTGAACCCGAGCCCCCGTTGACATT
GACGTTGCCATTGGCTTCTCCTGGTACCTGACTGCTACAGCCGGCAGTGG
CGGAGTTCGCTGCCAGCATTTCAAAGTCGTCTAGCTCATCGAACGGATCA
TCGATTTTGTGGCCAAGTGAGACGGCATCGTCGGCCTCGGCACTCAGTCG
TCCATATGCCTTCCGTGGGGGCCTCTTCACATATTTGTCTTGTGTGCTGT
TGTTGTGATTACCGCCGTTTGAGTTGCTCTTGGAAAAGCTGCAGTTGTTG
TTGAAGGAGTTGAAGAAGTTGGCGGCACGGGTGCGCCGTAAAATCCAAAA
CATGTCGACTGATAACT

BO07678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-PA 888 CG11317-RA 1..885 903..19 4400 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 1795 CG11317-RA 252..1137 904..19 4415 99.9 Minus
CG11317-RB 1804 CG11317-RB 252..1146 904..19 4315 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31092055..31092545 300..790 2455 100 Plus
3R 32079331 3R 31091370..31091563 19..212 970 100 Plus
3R 32079331 3R 31096955..31097070 789..904 565 99.1 Plus
3R 32079331 3R 31091686..31091774 212..300 445 100 Plus
Blast to na_te.dros performed 2015-02-12 14:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6801 877..795 127 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6709..6780 866..795 126 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6849 871..795 115 61 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2410 883..788 114 62.7 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..577 862..819 112 72.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6811..6904 884..791 110 57.4 Minus

BO07678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:02 Download gff for BO07678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 1..888 15..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:09 Download gff for BO07678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 1..888 15..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:56 Download gff for BO07678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 252..1140 15..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:31 Download gff for BO07678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 252..1140 15..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:31 Download gff for BO07678.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31091366..31091562 15..211 98 <- Plus
3R 31091686..31091773 212..299 100 <- Plus
3R 31092055..31092543 300..788 100 <- Plus
3R 31096955..31097070 789..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:56 Download gff for BO07678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26917088..26917284 15..211 98 <- Plus
arm_3R 26917408..26917495 212..299 100 <- Plus
arm_3R 26917777..26918265 300..788 100 <- Plus
arm_3R 26922677..26922792 789..904 99   Plus

BO07678.5prime Sequence

857 bp (799 high quality bases) assembled on 2006-01-06

> BO07678.5prime
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACT

BO07678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-PA 888 CG11317-RA 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 1795 CG11317-RA 252..1093 16..857 4210 100 Plus
CG11317-RB 1804 CG11317-RB 252..1102 16..857 4110 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31092055..31092545 620..130 2455 100 Minus
3R 32079331 3R 31091414..31091563 857..708 750 100 Minus
3R 32079331 3R 31096955..31097070 131..16 580 100 Minus
3R 32079331 3R 31091686..31091774 708..620 445 100 Minus
Blast to na_te.dros performed 2015-02-11 17:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6801 43..125 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6709..6780 54..125 126 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6849 49..125 115 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2410 37..132 114 62.7 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..577 58..101 112 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6811..6904 36..129 110 57.4 Plus

BO07678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:03 Download gff for BO07678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:12 Download gff for BO07678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:11 Download gff for BO07678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 252..1093 16..857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:39 Download gff for BO07678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 252..1093 16..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:39 Download gff for BO07678.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31091686..31091773 621..708 100 <- Minus
3R 31091414..31091562 709..857 100 <- Minus
3R 31092055..31092543 132..620 100 <- Minus
3R 31096955..31097070 16..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:11 Download gff for BO07678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26917136..26917284 709..857 100 <- Minus
arm_3R 26917408..26917495 621..708 100 <- Minus
arm_3R 26917777..26918265 132..620 100 <- Minus
arm_3R 26922677..26922792 16..131 100   Minus

BO07678.complete Sequence

919 bp (919 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630893

> BO07678.complete
GAAGTTATCAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCA
ACTTCTTCAACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCA
AACGGCGGTAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCC
CCCACGGAAGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCT
CACTTGGCCACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAA
ATGCTGGCAGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGG
AGAAGCCAATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAG
GATCCACAGGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGG
AGTGGAAACGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCA
GGGCAACTACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGG
CGAAAGCCAAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCG
AAGGAGATTAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGC
GGATGACGATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACC
GAGCTTTCCATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGA
CACTTCGGTTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCT
GGAGCACCACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTC
GCAGGGTCTGTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGAC
ACCGACTCCTTTATCAGCGACGCGGAGAGCGAGGATCTGGAGAGGCTGTT
GGCAAGCTTTCTAGACCAT

BO07678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 888 CG11317-PA 1..885 17..901 4425 100 Plus
CG11317-RB 897 CG11317-PB 1..894 17..901 4300 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-RA 1795 CG11317-RA 252..1137 16..901 4430 100 Plus
CG11317-RB 1804 CG11317-RB 252..1146 16..901 4305 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31092055..31092545 620..130 2455 100 Minus
3R 32079331 3R 31091370..31091563 901..708 970 100 Minus
3R 32079331 3R 31096955..31097070 131..16 580 100 Minus
3R 32079331 3R 31091686..31091774 708..620 445 100 Minus
Blast to na_te.dros performed 2014-11-26 14:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6801 43..125 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6709..6780 54..125 126 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6849 49..125 115 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2410 37..132 114 62.7 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..577 58..101 112 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6811..6904 36..129 110 57.4 Plus

BO07678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:03 Download gff for BO07678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 1..888 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:46 Download gff for BO07678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 249..1137 16..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:22 Download gff for BO07678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 260..1137 24..903 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:04 Download gff for BO07678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 249..1137 16..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:37 Download gff for BO07678.complete
Subject Subject Range Query Range Percent Splice Strand
CG11317-RA 260..1137 24..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:37 Download gff for BO07678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31091368..31091562 709..903 98 <- Minus
3R 31091686..31091773 621..708 100 <- Minus
3R 31092055..31092543 132..620 100 <- Minus
3R 31096955..31097062 24..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:22 Download gff for BO07678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26917090..26917284 709..903 98 <- Minus
arm_3R 26917408..26917495 621..708 100 <- Minus
arm_3R 26917777..26918265 132..620 100 <- Minus
arm_3R 26922677..26922784 24..131 100   Minus

BO07678.pep Sequence

Translation from 16 to 919

> BO07678.pep
MFWILRRTGAANFFNSFNNNCSFSKSNSNGGNHNNSTQDKYVKRPPRKAY
GRLSAEADDAVSLGHKIDDPFDELDDFEMLAANSATAGCSSQVPGEANGN
VNVNGGSGSGLGSTGAAGCGNGNGNGNGSGNGNLSLLPCMDADCQGNYEV
ESALCELGLCQAKAKTSKDLGAGSTSTSKEINENTISRLHALAMADDDDD
YDESLTCNVCDRAFHCHRQLASHQQKKRHFGCSGCDSLFPSLMLLEHHKE
EFEHWSDEEIGRRVCCRRNRCDDDYFTDTDSFISDAESEDLERLLASFLD
H

BO07678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11317-PA 295 CG11317-PA 1..295 1..295 1601 100 Plus
CG11317-PB 298 CG11317-PB 1..298 1..295 1587 99 Plus