Clone BO07685 Report

Search the DGRC for BO07685

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptGNBP2-RC
Protein status:BO07685.pep: validated full length
Sequenced Size:757

Clone Sequence Records

BO07685.3prime Sequence

755 bp (754 high quality bases) assembled on 2006-01-06

> BO07685.3prime
ATGGTCTAGAAAGCTTGCCTCACAGGGGAAAAGCCAATCCCCCTTGGGCA
ACTTGGCGCGCACGACGATTTTGCCAAATTTGAAACTGAAAGAGTTTCTG
GTGTGAATTTGGGCGGAGAAAACTGGAGGCTTGATGCTATAGAAGATGCC
GTGCGCAATGTTGCACTCCTGTTCCGGACTTTCGACGGCCGTACAGCGAT
CTCCCAGTTTGAAGCTGCCATCGGTGACCTCGGTGGCGATAGTGGGAACG
ATATGGAGTTCGCCTTCCTTCACAAAGCAGTTGCGTGCGGCATCGTCGAA
GGCCACCAGCTCCTCCTCCACGTGGTACATGCGCTGTCGGATGTCATGCT
TCCAGGTGGTCTTGTTCAGCTGCGCCTCCGAGAAGTTGTCCTCAAAGATC
AGTTCACCCTGGCAAGTATGGCGTCCATTGCTCACTATCGTTTGGGCGGC
CTTGCAGCGTTTGGCTTGCTGTGCAGGAGCTAGGTATGCCTGGCACTCGC
CCTCTCCTGTAAGGAATGTTATGCCTCGCGAGCTAGAGTCTTTGGTGGTC
AGTAGCCGGGTGTTTATGATCACCCTGGTTTCACTCTTTTCGAAGATTTC
CTCATTGAACTGCACCAGCATTGATATCTGCAGCTTGTCGTTGTTCTGCA
GACTCATCTTTTGCTTGGAGACCCAACTTCCGTTCACTGCCTCCGTGATG
TAGTCCATTAGAGCCGGGCAGGTGTCGTCAATTTGGAACATGTCGACTGA
TAACT

BO07685.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4144-PC 726 GNBP2-RC 1..723 741..19 3615 100 Minus
CG4144-PB 1386 GNBP2-RB 152..871 743..24 3600 100 Minus
CG4144-PA 1299 GNBP2-RA 65..784 743..24 3600 100 Minus
CG4144-PD 1233 GNBP2-RD 1..718 741..24 3590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RD 1341 CG4144-RD 63..782 743..24 3600 100 Minus
GNBP2-RA 1439 CG4144-RA 161..880 743..24 3600 100 Minus
GNBP2-RB 1501 CG4144-RB 223..942 743..24 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18674545..18674950 338..743 2030 100 Plus
3L 28110227 3L 18674164..18674483 19..338 1600 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:55:47 has no hits.

BO07685.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:13 Download gff for BO07685.3prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-PC 1..726 18..741 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:28 Download gff for BO07685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4144-PC 1..726 18..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:00 Download gff for BO07685.3prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..813 13..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:07 Download gff for BO07685.3prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 220..942 24..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:07 Download gff for BO07685.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18674160..18674482 13..337 99 <- Plus
3L 18674545..18674953 338..746 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:00 Download gff for BO07685.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18667260..18667582 13..337 99 <- Plus
arm_3L 18667645..18668053 338..746 99   Plus

BO07685.5prime Sequence

755 bp (754 high quality bases) assembled on 2006-01-06

> BO07685.5prime
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGGCAAGCTTTCT
AGACC

BO07685.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4144-PC 726 GNBP2-RC 1..723 17..739 3615 100 Plus
CG4144-PB 1386 GNBP2-RB 152..871 15..734 3600 100 Plus
CG4144-PA 1299 GNBP2-RA 65..784 15..734 3600 100 Plus
CG4144-PD 1233 GNBP2-RD 1..718 17..734 3590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RD 1341 CG4144-RD 63..782 15..734 3600 100 Plus
GNBP2-RA 1439 CG4144-RA 161..880 15..734 3600 100 Plus
GNBP2-RB 1501 CG4144-RB 223..942 15..734 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18674545..18674950 420..15 2030 100 Minus
3L 28110227 3L 18674164..18674483 739..420 1600 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:28:53 has no hits.

BO07685.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:14 Download gff for BO07685.5prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-PC 1..726 17..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:29 Download gff for BO07685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4144-PC 1..726 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:56 Download gff for BO07685.5prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..813 12..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:16 Download gff for BO07685.5prime
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 220..942 12..734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:16 Download gff for BO07685.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18674160..18674482 421..745 99 <- Minus
3L 18674545..18674953 12..420 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:56 Download gff for BO07685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18667260..18667582 421..745 99 <- Minus
arm_3L 18667645..18668053 12..420 99   Minus

BO07685.complete Sequence

757 bp (757 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630896

> BO07685.complete
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGGCAAGCTTTCT
AGACCAT

BO07685.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RA 1299 CG4144-PA 65..784 15..734 3600 100 Plus
GNBP2-RB 1386 CG4144-PB 152..871 15..734 3600 100 Plus
GNBP2-RD 1233 CG4144-PD 1..718 17..734 3590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RD 1341 CG4144-RD 63..782 15..734 3600 100 Plus
GNBP2-RA 1439 CG4144-RA 161..880 15..734 3600 100 Plus
GNBP2-RB 1501 CG4144-RB 223..942 15..734 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18674545..18674950 420..15 2030 100 Minus
3L 28110227 3L 18674164..18674483 739..420 1600 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:37:37 has no hits.

BO07685.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:07 Download gff for BO07685.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 1..726 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:49 Download gff for BO07685.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..813 12..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:21:27 Download gff for BO07685.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 92..809 22..741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:08 Download gff for BO07685.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 82..813 12..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:44 Download gff for BO07685.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 230..951 22..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:44 Download gff for BO07685.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18674160..18674482 421..741 99 <- Minus
3L 18674545..18674943 22..420 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:21:27 Download gff for BO07685.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18667260..18667582 421..741 99 <- Minus
arm_3L 18667645..18668043 22..420 100   Minus

BO07685.pep Sequence

Translation from 16 to 757

> BO07685.pep
MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF
EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ
TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD
AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF
YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCEASFLDH

BO07685.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-PD 410 CG4144-PD 1..239 1..239 1254 100 Plus
GNBP2-PA 432 CG4144-PA 23..261 1..239 1254 100 Plus
GNBP2-PB 461 CG4144-PB 52..290 1..239 1254 100 Plus
GNBP1-PA 492 CG6895-PA 70..303 15..239 231 28.3 Plus