Clone Sequence Records
BO07685.3prime Sequence
755 bp (754 high quality bases) assembled on 2006-01-06
> BO07685.3prime
ATGGTCTAGAAAGCTTGCCTCACAGGGGAAAAGCCAATCCCCCTTGGGCA
ACTTGGCGCGCACGACGATTTTGCCAAATTTGAAACTGAAAGAGTTTCTG
GTGTGAATTTGGGCGGAGAAAACTGGAGGCTTGATGCTATAGAAGATGCC
GTGCGCAATGTTGCACTCCTGTTCCGGACTTTCGACGGCCGTACAGCGAT
CTCCCAGTTTGAAGCTGCCATCGGTGACCTCGGTGGCGATAGTGGGAACG
ATATGGAGTTCGCCTTCCTTCACAAAGCAGTTGCGTGCGGCATCGTCGAA
GGCCACCAGCTCCTCCTCCACGTGGTACATGCGCTGTCGGATGTCATGCT
TCCAGGTGGTCTTGTTCAGCTGCGCCTCCGAGAAGTTGTCCTCAAAGATC
AGTTCACCCTGGCAAGTATGGCGTCCATTGCTCACTATCGTTTGGGCGGC
CTTGCAGCGTTTGGCTTGCTGTGCAGGAGCTAGGTATGCCTGGCACTCGC
CCTCTCCTGTAAGGAATGTTATGCCTCGCGAGCTAGAGTCTTTGGTGGTC
AGTAGCCGGGTGTTTATGATCACCCTGGTTTCACTCTTTTCGAAGATTTC
CTCATTGAACTGCACCAGCATTGATATCTGCAGCTTGTCGTTGTTCTGCA
GACTCATCTTTTGCTTGGAGACCCAACTTCCGTTCACTGCCTCCGTGATG
TAGTCCATTAGAGCCGGGCAGGTGTCGTCAATTTGGAACATGTCGACTGA
TAACT
BO07685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4144-PC | 726 | GNBP2-RC | 1..723 | 741..19 | 3615 | 100 | Minus |
CG4144-PB | 1386 | GNBP2-RB | 152..871 | 743..24 | 3600 | 100 | Minus |
CG4144-PA | 1299 | GNBP2-RA | 65..784 | 743..24 | 3600 | 100 | Minus |
CG4144-PD | 1233 | GNBP2-RD | 1..718 | 741..24 | 3590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RD | 1341 | CG4144-RD | 63..782 | 743..24 | 3600 | 100 | Minus |
GNBP2-RA | 1439 | CG4144-RA | 161..880 | 743..24 | 3600 | 100 | Minus |
GNBP2-RB | 1501 | CG4144-RB | 223..942 | 743..24 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18674545..18674950 | 338..743 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 18674164..18674483 | 19..338 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:55:47 has no hits.
BO07685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:13 Download gff for
BO07685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-PC | 1..726 | 18..741 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:28 Download gff for
BO07685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4144-PC | 1..726 | 18..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:00 Download gff for
BO07685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..813 | 13..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:07 Download gff for
BO07685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RB | 220..942 | 24..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:07 Download gff for
BO07685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18674160..18674482 | 13..337 | 99 | <- | Plus |
3L | 18674545..18674953 | 338..746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:00 Download gff for
BO07685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18667260..18667582 | 13..337 | 99 | <- | Plus |
arm_3L | 18667645..18668053 | 338..746 | 99 | | Plus |
BO07685.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-01-06
> BO07685.5prime
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGGCAAGCTTTCT
AGACC
BO07685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4144-PC | 726 | GNBP2-RC | 1..723 | 17..739 | 3615 | 100 | Plus |
CG4144-PB | 1386 | GNBP2-RB | 152..871 | 15..734 | 3600 | 100 | Plus |
CG4144-PA | 1299 | GNBP2-RA | 65..784 | 15..734 | 3600 | 100 | Plus |
CG4144-PD | 1233 | GNBP2-RD | 1..718 | 17..734 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RD | 1341 | CG4144-RD | 63..782 | 15..734 | 3600 | 100 | Plus |
GNBP2-RA | 1439 | CG4144-RA | 161..880 | 15..734 | 3600 | 100 | Plus |
GNBP2-RB | 1501 | CG4144-RB | 223..942 | 15..734 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18674545..18674950 | 420..15 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 18674164..18674483 | 739..420 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:28:53 has no hits.
BO07685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:14 Download gff for
BO07685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-PC | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:29 Download gff for
BO07685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4144-PC | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:56 Download gff for
BO07685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..813 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:16 Download gff for
BO07685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RB | 220..942 | 12..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:16 Download gff for
BO07685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18674160..18674482 | 421..745 | 99 | <- | Minus |
3L | 18674545..18674953 | 12..420 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:56 Download gff for
BO07685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18667260..18667582 | 421..745 | 99 | <- | Minus |
arm_3L | 18667645..18668053 | 12..420 | 99 | | Minus |
BO07685.complete Sequence
757 bp (757 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630896
> BO07685.complete
GAAGTTATCAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAA
TGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAG
ATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTT
CAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCC
GGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACA
GGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACG
CTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGG
GTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACC
ACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCT
GGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAAC
TCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAA
CTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACAT
TGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAA
TTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGC
GCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTGTGAGGCAAGCTTTCT
AGACCAT
BO07685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RA | 1299 | CG4144-PA | 65..784 | 15..734 | 3600 | 100 | Plus |
GNBP2-RB | 1386 | CG4144-PB | 152..871 | 15..734 | 3600 | 100 | Plus |
GNBP2-RD | 1233 | CG4144-PD | 1..718 | 17..734 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-RD | 1341 | CG4144-RD | 63..782 | 15..734 | 3600 | 100 | Plus |
GNBP2-RA | 1439 | CG4144-RA | 161..880 | 15..734 | 3600 | 100 | Plus |
GNBP2-RB | 1501 | CG4144-RB | 223..942 | 15..734 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18674545..18674950 | 420..15 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 18674164..18674483 | 739..420 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:37:37 has no hits.
BO07685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:07 Download gff for
BO07685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:49 Download gff for
BO07685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..813 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:21:27 Download gff for
BO07685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 92..809 | 22..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:08 Download gff for
BO07685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RC | 82..813 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:44 Download gff for
BO07685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GNBP2-RB | 230..951 | 22..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:44 Download gff for
BO07685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18674160..18674482 | 421..741 | 99 | <- | Minus |
3L | 18674545..18674943 | 22..420 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:21:27 Download gff for
BO07685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18667260..18667582 | 421..741 | 99 | <- | Minus |
arm_3L | 18667645..18668043 | 22..420 | 100 | | Minus |
BO07685.pep Sequence
Translation from 16 to 757
> BO07685.pep
MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF
EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ
TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD
AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF
YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCEASFLDH
BO07685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GNBP2-PD | 410 | CG4144-PD | 1..239 | 1..239 | 1254 | 100 | Plus |
GNBP2-PA | 432 | CG4144-PA | 23..261 | 1..239 | 1254 | 100 | Plus |
GNBP2-PB | 461 | CG4144-PB | 52..290 | 1..239 | 1254 | 100 | Plus |
GNBP1-PA | 492 | CG6895-PA | 70..303 | 15..239 | 231 | 28.3 | Plus |