Clone Sequence Records
BO07688.3prime Sequence
927 bp (817 high quality bases) assembled on 2006-01-06
> BO07688.3prime
ATGGTCTAGAAAGCTTGCACTTATTAATCGTAATATATTTATAAGACATA
AGGAATATATAAAGGCACTGATTCCGCCGCGCCCATTAACCGAGCCCGAG
TTGAACATCATGCTGGCCGATAGAACCTCAGATCTCTGGGTGATTTCGTT
GTGGAAGTCCTCTTCGGTAAAATCGTCCTGAAGCTCCGATTCAGTCGAGT
AGTTGGGCAGTTCAACTTCTCCGCCTGTGGCAAAACGCACTATCTTGCTA
TTGTCGCTCCAACCAAAGCTATTTCTGGCCAAAACGGAAACTTCGTAGAG
ACTAGCGGGCTGGAGGCCATGTAGAGTGTATGTGGTTATATAGATGAGTC
CGTTTGTGGCCTGAGCCGGGATCGTGAGCTCTGTCCAGTTGGTTCTAACC
TGGCGGGTGACATTGTTCGAGGGGATCTGTCGGAACTTGAGCTTGAACTC
CATGATCGGTAGCAGGCTCTCGGTCTGCCAAACGAGGACATGCGACGTGG
AGCTCTGGGTGCCGGGGTTAATCTTAAAGAGGCAGGGCATCGGACGGCCG
GTCAGCTCAACACTTCCGCTTTTCACGGATATCTGATTGCTGGCGCGGCA
CTCGTACTGCCCCATATCCGCGTTCCTCACGCTCTTCACCACCAGCATGT
GACGCACGGCGTTCACGTAGTGATCCACCGACCGGTTCGTCTGCAACTCC
GACTCGTGAGTGGTGGAGTGGGCTCCCAGTGCCACCGGCAGTCCGTGATG
GAACCACTTAACCGTGGCCGCCGGTGCCGCCTCCACAATGCACTCAAGAT
GGGCACGGGAGCCCAGTTTGGTGTACACCACGGGTTGGGGTATGCTCACC
TCGGGCGAAAATAGCACATGGAGATAGACATTGGCCACCGCTGGCTCACC
CACTCCATTGCTGGCCACGCATTCTAT
BO07688.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10382-PA | 1503 | wrapper-RA | 592..1500 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wrapper-RA | 1977 | CG10382-RA | 757..1665 | 927..19 | 4545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22381400..22381910 | 860..350 | 2555 | 100 | Minus |
2R | 25286936 | 2R | 22382165..22382363 | 217..19 | 995 | 100 | Minus |
2R | 25286936 | 2R | 22381973..22382113 | 351..211 | 690 | 99.3 | Minus |
2R | 25286936 | 2R | 22381265..22381331 | 927..861 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:15:03 has no hits.
BO07688.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:19 Download gff for
BO07688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10382-PA | 592..1503 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:36 Download gff for
BO07688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10382-PA | 592..1503 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:05 Download gff for
BO07688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 757..1665 | 19..927 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:47 Download gff for
BO07688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 757..1665 | 19..927 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:47 Download gff for
BO07688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22381265..22381331 | 861..927 | 100 | -> | Minus |
2R | 22381400..22381909 | 351..860 | 100 | -> | Minus |
2R | 22381974..22382108 | 216..350 | 100 | -> | Minus |
2R | 22382167..22382363 | 19..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:05 Download gff for
BO07688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18268770..18268836 | 861..927 | 100 | -> | Minus |
arm_2R | 18268905..18269414 | 351..860 | 100 | -> | Minus |
arm_2R | 18269479..18269613 | 216..350 | 100 | -> | Minus |
arm_2R | 18269672..18269868 | 19..215 | 100 | | Minus |
BO07688.5prime Sequence
911 bp (808 high quality bases) assembled on 2006-01-06
> BO07688.5prime
GAAGTTATCAGTCGACATGACGCCCCATATGTGCTCAGTGGTGAGGTGTT
TGCTTGCGGCCCTAATCCTTGGCCAAGTGCAAGCCGAGCTGGATTTTAAC
AACGATCTCGAAAACAGTCAAAAGTTCAAGAGCATACCAACCACAGTGAA
AACCTATGAGAACGATACAGTGCAGCTTCCGTGCACCTTAAACACTCCCT
TCCGCTACGTCCGTTGGCATCGGGACGATGTGGCTCTGGTGGACTCCAGA
CACCCGGAGCTCCCGCCGCCGGATCGCATAATGCTCTGGCCGAATGGCAG
CCTGCAGGTGGCCAACGTGCAGTCCAGTGACACCGGGGACTACTACTGCG
AAATGAACTCGGATTCGGGTCATGTGGTCCAGCAGCACGCCATCGAAGTG
CAATTGGCTCCACAGGTGTTGATTGAACCATCGGATCTCACGGAGCAGCG
GATAGGTGCAATCTTCGAGGTGGTGTGCGAGGCCCAGGGAGTGCCCCAAC
CGGTCATCACCTGGCGGTTGAACGGCAATGTCATCCAGCCACAGAGCAAC
ACGGGGAATCGGCAAAGCCTCATCCTGGAGATCAAATCGAGGAACCAGGC
GGGCCTCATAGAATGCGTGGCCAGCAATGGAGTGGGTGAGCCAGCGGTGG
CCAATGTCTATCTCCATGTGCTATTTTCGCCCGAGGTGAGCATACCCCAA
CCCGTGGTGTACACCAAACTGGGCTCCCGTGCCCATCTTGAGTGCATTGT
GGAGGCGGCACCGGCGGCCACGGTTAAGTGGTTCCATCACGGACTGCCGG
TGGCACTGGGAGCCCACTCCACCACTCACGAGTCGGAGTTGCAGACGAAC
CGGTCGGTGGATCACTACGTGAACGCCGTGCGTCACATGCTGGTGGTGAA
GAGCGTGAGGA
BO07688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10382-PA | 1503 | wrapper-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wrapper-RA | 1977 | CG10382-RA | 166..1060 | 17..911 | 4475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22380852..22381331 | 195..674 | 2400 | 100 | Plus |
2R | 25286936 | 2R | 22381400..22381636 | 675..911 | 1185 | 100 | Plus |
2R | 25286936 | 2R | 22379802..22379979 | 17..194 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:13:27 has no hits.
BO07688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:20 Download gff for
BO07688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10382-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:38 Download gff for
BO07688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10382-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:44 Download gff for
BO07688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 166..1059 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:55 Download gff for
BO07688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 166..1059 | 17..910 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:55 Download gff for
BO07688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22379802..22379979 | 17..194 | 100 | -> | Plus |
2R | 22380852..22381331 | 195..674 | 100 | -> | Plus |
2R | 22381400..22381635 | 675..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:44 Download gff for
BO07688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18267307..18267484 | 17..194 | 100 | -> | Plus |
arm_2R | 18268357..18268836 | 195..674 | 100 | -> | Plus |
arm_2R | 18268905..18269140 | 675..910 | 100 | | Plus |
BO07688.complete Sequence
1534 bp (1534 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630898
> BO07688.complete
GAAGTTATCAGTCGACATGACGCCCCATATGTGCTCAGTGGTGAGGTGTT
TGCTTGCGGCCCTAATCCTTGGCCAAGTGCAAGCCGAGCTGGATTTTAAC
AACGATCTCGAAAACAGTCAAAAGTTCAAGAGCATACCAACCACAGTGAA
AACCTATGAGAACGATACAGTGCAGCTTCCGTGCACCTTAAACACTCCCT
TCCGCTACGTCCGTTGGCATCGGGACGATGTGGCTCTGGTGGACTCCAGA
CACCCGGAGCTCCCGCCGCCGGATCGCATAATGCTCTGGCCGAATGGCAG
CCTGCAGGTGGCCAACGTGCAGTCCAGTGACACCGGGGACTACTACTGCG
AAATGAACTCGGATTCGGGTCATGTGGTCCAGCAGCACGCCATCGAAGTG
CAATTGGCTCCACAGGTGTTGATTGAACCATCGGATCTCACGGAGCAGCG
GATAGGTGCAATCTTCGAGGTGGTGTGCGAGGCCCAGGGAGTGCCCCAAC
CGGTCATCACCTGGCGGTTGAACGGCAATGTCATCCAGCCACAGAGCAAC
ACGGGGAATCGGCAAAGCCTCATCCTGGAGATCAAATCGAGGAACCAGGC
GGGCCTCATAGAATGCGTGGCCAGCAATGGAGTGGGTGAGCCAGCGGTGG
CCAATGTCTATCTCCATGTGCTATTTTCGCCCGAGGTGAGCATACCCCAA
CCCGTGGTGTACACCAAACTGGGCTCCCGTGCCCATCTTGAGTGCATTGT
GGAGGCGGCACCGGCGGCCACGGTTAAGTGGTTCCATCACGGACTGCCGG
TGGCACTGGGAGCCCACTCCACCACTCACGAGTCGGAGTTGCAGACGAAC
CGGTCGGTGGATCACTACGTGAACGCCGTGCGTCACATGCTGGTGGTGAA
GAGCGTGAGGAACGCGGATATGGGGCAGTACGAGTGCCGCGCCAGCAATC
AGATATCCGTGAAAAGCGGAAGTGTTGAGCTGACCGGCCGTCCGATGCCC
TGCCTCTTTAAGATTAACCCCGGCACCCAGAGCTCCACGTCGCATGTCCT
CGTTTGGCAGACCGAGAGCCTGCTACCGATCATGGAGTTCAAGCTCAAGT
TCCGACAGATCCCCTCGAACAATGTCACCCGCCAGGTTAGAACCAACTGG
ACAGAGCTCACGATCCCGGCTCAGGCCACAAACGGACTCATCTATATAAC
CACATACACTCTACATGGCCTCCAGCCCGCTAGTCTCTACGAAGTTTCCG
TTTTGGCCAGAAATAGCTTTGGTTGGAGCGACAATAGCAAGATAGTGCGT
TTTGCCACAGGCGGAGAAGTTGAACTGCCCAACTACTCGACTGAATCGGA
GCTTCAGGACGATTTTACCGAAGAGGACTTCCACAACGAAATCACCCAGA
GATCTGAGGTTCTATCGGCCAGCATGATGTTCAACTCGGGCTCGGTTAAT
GGGCGCGGCGGAATCAGTGCCTTTATATATTCCTTATGTCTTATAAATAT
ATTACGATTAATAAGTGCAAGCTTTCTAGACCAT
BO07688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wrapper-RA | 1503 | CG10382-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wrapper-RA | 1977 | CG10382-RA | 166..1665 | 17..1516 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22381400..22381910 | 675..1185 | 2555 | 100 | Plus |
2R | 25286936 | 2R | 22380852..22381331 | 195..674 | 2400 | 100 | Plus |
2R | 25286936 | 2R | 22382165..22382363 | 1318..1516 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22379802..22379979 | 17..194 | 890 | 100 | Plus |
2R | 25286936 | 2R | 22381973..22382113 | 1184..1324 | 690 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:06:04 has no hits.
BO07688.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:09 Download gff for
BO07688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 1..1503 | 17..1517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:51 Download gff for
BO07688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 291..1790 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:57 Download gff for
BO07688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 166..1665 | 17..1518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:09 Download gff for
BO07688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 291..1790 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:28 Download gff for
BO07688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wrapper-RA | 166..1665 | 17..1518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:28 Download gff for
BO07688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22379802..22379979 | 17..194 | 100 | -> | Plus |
2R | 22380852..22381331 | 195..674 | 100 | -> | Plus |
2R | 22381400..22381909 | 675..1184 | 100 | -> | Plus |
2R | 22381974..22382108 | 1185..1319 | 100 | -> | Plus |
2R | 22382167..22382363 | 1320..1518 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:57 Download gff for
BO07688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18267307..18267484 | 17..194 | 100 | -> | Plus |
arm_2R | 18268357..18268836 | 195..674 | 100 | -> | Plus |
arm_2R | 18268905..18269414 | 675..1184 | 100 | -> | Plus |
arm_2R | 18269479..18269613 | 1185..1319 | 100 | -> | Plus |
arm_2R | 18269672..18269868 | 1320..1518 | 98 | | Plus |
BO07688.pep Sequence
Translation from 16 to 1534
> BO07688.pep
MTPHMCSVVRCLLAALILGQVQAELDFNNDLENSQKFKSIPTTVKTYEND
TVQLPCTLNTPFRYVRWHRDDVALVDSRHPELPPPDRIMLWPNGSLQVAN
VQSSDTGDYYCEMNSDSGHVVQQHAIEVQLAPQVLIEPSDLTEQRIGAIF
EVVCEAQGVPQPVITWRLNGNVIQPQSNTGNRQSLILEIKSRNQAGLIEC
VASNGVGEPAVANVYLHVLFSPEVSIPQPVVYTKLGSRAHLECIVEAAPA
ATVKWFHHGLPVALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKSVRNA
DMGQYECRASNQISVKSGSVELTGRPMPCLFKINPGTQSSTSHVLVWQTE
SLLPIMEFKLKFRQIPSNNVTRQVRTNWTELTIPAQATNGLIYITTYTLH
GLQPASLYEVSVLARNSFGWSDNSKIVRFATGGEVELPNYSTESELQDDF
TEEDFHNEITQRSEVLSASMMFNSGSVNGRGGISAFIYSLCLINILRLIS
ASFLDH
BO07688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wrapper-PA | 500 | CG10382-PA | 1..500 | 1..500 | 2605 | 100 | Plus |
klg-PA | 545 | CG6669-PA | 102..534 | 36..494 | 477 | 28.4 | Plus |
CG34353-PB | 566 | CG34353-PB | 83..407 | 32..369 | 426 | 30 | Plus |
CG34353-PA | 566 | CG34353-PA | 83..407 | 32..369 | 426 | 30 | Plus |
CG34353-PC | 581 | CG34353-PC | 83..407 | 32..369 | 426 | 30 | Plus |