Clone BO07688 Report

Search the DGRC for BO07688

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptwrapper-RA
Protein status:BO07688.pep: validated full length
Sequenced Size:1534

Clone Sequence Records

BO07688.3prime Sequence

927 bp (817 high quality bases) assembled on 2006-01-06

> BO07688.3prime
ATGGTCTAGAAAGCTTGCACTTATTAATCGTAATATATTTATAAGACATA
AGGAATATATAAAGGCACTGATTCCGCCGCGCCCATTAACCGAGCCCGAG
TTGAACATCATGCTGGCCGATAGAACCTCAGATCTCTGGGTGATTTCGTT
GTGGAAGTCCTCTTCGGTAAAATCGTCCTGAAGCTCCGATTCAGTCGAGT
AGTTGGGCAGTTCAACTTCTCCGCCTGTGGCAAAACGCACTATCTTGCTA
TTGTCGCTCCAACCAAAGCTATTTCTGGCCAAAACGGAAACTTCGTAGAG
ACTAGCGGGCTGGAGGCCATGTAGAGTGTATGTGGTTATATAGATGAGTC
CGTTTGTGGCCTGAGCCGGGATCGTGAGCTCTGTCCAGTTGGTTCTAACC
TGGCGGGTGACATTGTTCGAGGGGATCTGTCGGAACTTGAGCTTGAACTC
CATGATCGGTAGCAGGCTCTCGGTCTGCCAAACGAGGACATGCGACGTGG
AGCTCTGGGTGCCGGGGTTAATCTTAAAGAGGCAGGGCATCGGACGGCCG
GTCAGCTCAACACTTCCGCTTTTCACGGATATCTGATTGCTGGCGCGGCA
CTCGTACTGCCCCATATCCGCGTTCCTCACGCTCTTCACCACCAGCATGT
GACGCACGGCGTTCACGTAGTGATCCACCGACCGGTTCGTCTGCAACTCC
GACTCGTGAGTGGTGGAGTGGGCTCCCAGTGCCACCGGCAGTCCGTGATG
GAACCACTTAACCGTGGCCGCCGGTGCCGCCTCCACAATGCACTCAAGAT
GGGCACGGGAGCCCAGTTTGGTGTACACCACGGGTTGGGGTATGCTCACC
TCGGGCGAAAATAGCACATGGAGATAGACATTGGCCACCGCTGGCTCACC
CACTCCATTGCTGGCCACGCATTCTAT

BO07688.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10382-PA 1503 wrapper-RA 592..1500 927..19 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
wrapper-RA 1977 CG10382-RA 757..1665 927..19 4545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22381400..22381910 860..350 2555 100 Minus
2R 25286936 2R 22382165..22382363 217..19 995 100 Minus
2R 25286936 2R 22381973..22382113 351..211 690 99.3 Minus
2R 25286936 2R 22381265..22381331 927..861 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:15:03 has no hits.

BO07688.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:19 Download gff for BO07688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10382-PA 592..1503 18..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:36 Download gff for BO07688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10382-PA 592..1503 18..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:05 Download gff for BO07688.3prime
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 757..1665 19..927 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:47 Download gff for BO07688.3prime
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 757..1665 19..927 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:47 Download gff for BO07688.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22381265..22381331 861..927 100 -> Minus
2R 22381400..22381909 351..860 100 -> Minus
2R 22381974..22382108 216..350 100 -> Minus
2R 22382167..22382363 19..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:05 Download gff for BO07688.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18268770..18268836 861..927 100 -> Minus
arm_2R 18268905..18269414 351..860 100 -> Minus
arm_2R 18269479..18269613 216..350 100 -> Minus
arm_2R 18269672..18269868 19..215 100   Minus

BO07688.5prime Sequence

911 bp (808 high quality bases) assembled on 2006-01-06

> BO07688.5prime
GAAGTTATCAGTCGACATGACGCCCCATATGTGCTCAGTGGTGAGGTGTT
TGCTTGCGGCCCTAATCCTTGGCCAAGTGCAAGCCGAGCTGGATTTTAAC
AACGATCTCGAAAACAGTCAAAAGTTCAAGAGCATACCAACCACAGTGAA
AACCTATGAGAACGATACAGTGCAGCTTCCGTGCACCTTAAACACTCCCT
TCCGCTACGTCCGTTGGCATCGGGACGATGTGGCTCTGGTGGACTCCAGA
CACCCGGAGCTCCCGCCGCCGGATCGCATAATGCTCTGGCCGAATGGCAG
CCTGCAGGTGGCCAACGTGCAGTCCAGTGACACCGGGGACTACTACTGCG
AAATGAACTCGGATTCGGGTCATGTGGTCCAGCAGCACGCCATCGAAGTG
CAATTGGCTCCACAGGTGTTGATTGAACCATCGGATCTCACGGAGCAGCG
GATAGGTGCAATCTTCGAGGTGGTGTGCGAGGCCCAGGGAGTGCCCCAAC
CGGTCATCACCTGGCGGTTGAACGGCAATGTCATCCAGCCACAGAGCAAC
ACGGGGAATCGGCAAAGCCTCATCCTGGAGATCAAATCGAGGAACCAGGC
GGGCCTCATAGAATGCGTGGCCAGCAATGGAGTGGGTGAGCCAGCGGTGG
CCAATGTCTATCTCCATGTGCTATTTTCGCCCGAGGTGAGCATACCCCAA
CCCGTGGTGTACACCAAACTGGGCTCCCGTGCCCATCTTGAGTGCATTGT
GGAGGCGGCACCGGCGGCCACGGTTAAGTGGTTCCATCACGGACTGCCGG
TGGCACTGGGAGCCCACTCCACCACTCACGAGTCGGAGTTGCAGACGAAC
CGGTCGGTGGATCACTACGTGAACGCCGTGCGTCACATGCTGGTGGTGAA
GAGCGTGAGGA

BO07688.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10382-PA 1503 wrapper-RA 1..895 17..911 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
wrapper-RA 1977 CG10382-RA 166..1060 17..911 4475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22380852..22381331 195..674 2400 100 Plus
2R 25286936 2R 22381400..22381636 675..911 1185 100 Plus
2R 25286936 2R 22379802..22379979 17..194 890 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:13:27 has no hits.

BO07688.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:20 Download gff for BO07688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10382-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:38 Download gff for BO07688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10382-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:44 Download gff for BO07688.5prime
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 166..1059 17..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:55 Download gff for BO07688.5prime
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 166..1059 17..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:55 Download gff for BO07688.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22379802..22379979 17..194 100 -> Plus
2R 22380852..22381331 195..674 100 -> Plus
2R 22381400..22381635 675..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:44 Download gff for BO07688.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18267307..18267484 17..194 100 -> Plus
arm_2R 18268357..18268836 195..674 100 -> Plus
arm_2R 18268905..18269140 675..910 100   Plus

BO07688.complete Sequence

1534 bp (1534 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630898

> BO07688.complete
GAAGTTATCAGTCGACATGACGCCCCATATGTGCTCAGTGGTGAGGTGTT
TGCTTGCGGCCCTAATCCTTGGCCAAGTGCAAGCCGAGCTGGATTTTAAC
AACGATCTCGAAAACAGTCAAAAGTTCAAGAGCATACCAACCACAGTGAA
AACCTATGAGAACGATACAGTGCAGCTTCCGTGCACCTTAAACACTCCCT
TCCGCTACGTCCGTTGGCATCGGGACGATGTGGCTCTGGTGGACTCCAGA
CACCCGGAGCTCCCGCCGCCGGATCGCATAATGCTCTGGCCGAATGGCAG
CCTGCAGGTGGCCAACGTGCAGTCCAGTGACACCGGGGACTACTACTGCG
AAATGAACTCGGATTCGGGTCATGTGGTCCAGCAGCACGCCATCGAAGTG
CAATTGGCTCCACAGGTGTTGATTGAACCATCGGATCTCACGGAGCAGCG
GATAGGTGCAATCTTCGAGGTGGTGTGCGAGGCCCAGGGAGTGCCCCAAC
CGGTCATCACCTGGCGGTTGAACGGCAATGTCATCCAGCCACAGAGCAAC
ACGGGGAATCGGCAAAGCCTCATCCTGGAGATCAAATCGAGGAACCAGGC
GGGCCTCATAGAATGCGTGGCCAGCAATGGAGTGGGTGAGCCAGCGGTGG
CCAATGTCTATCTCCATGTGCTATTTTCGCCCGAGGTGAGCATACCCCAA
CCCGTGGTGTACACCAAACTGGGCTCCCGTGCCCATCTTGAGTGCATTGT
GGAGGCGGCACCGGCGGCCACGGTTAAGTGGTTCCATCACGGACTGCCGG
TGGCACTGGGAGCCCACTCCACCACTCACGAGTCGGAGTTGCAGACGAAC
CGGTCGGTGGATCACTACGTGAACGCCGTGCGTCACATGCTGGTGGTGAA
GAGCGTGAGGAACGCGGATATGGGGCAGTACGAGTGCCGCGCCAGCAATC
AGATATCCGTGAAAAGCGGAAGTGTTGAGCTGACCGGCCGTCCGATGCCC
TGCCTCTTTAAGATTAACCCCGGCACCCAGAGCTCCACGTCGCATGTCCT
CGTTTGGCAGACCGAGAGCCTGCTACCGATCATGGAGTTCAAGCTCAAGT
TCCGACAGATCCCCTCGAACAATGTCACCCGCCAGGTTAGAACCAACTGG
ACAGAGCTCACGATCCCGGCTCAGGCCACAAACGGACTCATCTATATAAC
CACATACACTCTACATGGCCTCCAGCCCGCTAGTCTCTACGAAGTTTCCG
TTTTGGCCAGAAATAGCTTTGGTTGGAGCGACAATAGCAAGATAGTGCGT
TTTGCCACAGGCGGAGAAGTTGAACTGCCCAACTACTCGACTGAATCGGA
GCTTCAGGACGATTTTACCGAAGAGGACTTCCACAACGAAATCACCCAGA
GATCTGAGGTTCTATCGGCCAGCATGATGTTCAACTCGGGCTCGGTTAAT
GGGCGCGGCGGAATCAGTGCCTTTATATATTCCTTATGTCTTATAAATAT
ATTACGATTAATAAGTGCAAGCTTTCTAGACCAT

BO07688.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
wrapper-RA 1503 CG10382-PA 1..1500 17..1516 7500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
wrapper-RA 1977 CG10382-RA 166..1665 17..1516 7500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22381400..22381910 675..1185 2555 100 Plus
2R 25286936 2R 22380852..22381331 195..674 2400 100 Plus
2R 25286936 2R 22382165..22382363 1318..1516 995 100 Plus
2R 25286936 2R 22379802..22379979 17..194 890 100 Plus
2R 25286936 2R 22381973..22382113 1184..1324 690 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 01:06:04 has no hits.

BO07688.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:09 Download gff for BO07688.complete
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 1..1503 17..1517 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:51 Download gff for BO07688.complete
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 291..1790 17..1516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:57 Download gff for BO07688.complete
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 166..1665 17..1518 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:09 Download gff for BO07688.complete
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 291..1790 17..1516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:28 Download gff for BO07688.complete
Subject Subject Range Query Range Percent Splice Strand
wrapper-RA 166..1665 17..1518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:28 Download gff for BO07688.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22379802..22379979 17..194 100 -> Plus
2R 22380852..22381331 195..674 100 -> Plus
2R 22381400..22381909 675..1184 100 -> Plus
2R 22381974..22382108 1185..1319 100 -> Plus
2R 22382167..22382363 1320..1518 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:57 Download gff for BO07688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18267307..18267484 17..194 100 -> Plus
arm_2R 18268357..18268836 195..674 100 -> Plus
arm_2R 18268905..18269414 675..1184 100 -> Plus
arm_2R 18269479..18269613 1185..1319 100 -> Plus
arm_2R 18269672..18269868 1320..1518 98   Plus

BO07688.pep Sequence

Translation from 16 to 1534

> BO07688.pep
MTPHMCSVVRCLLAALILGQVQAELDFNNDLENSQKFKSIPTTVKTYEND
TVQLPCTLNTPFRYVRWHRDDVALVDSRHPELPPPDRIMLWPNGSLQVAN
VQSSDTGDYYCEMNSDSGHVVQQHAIEVQLAPQVLIEPSDLTEQRIGAIF
EVVCEAQGVPQPVITWRLNGNVIQPQSNTGNRQSLILEIKSRNQAGLIEC
VASNGVGEPAVANVYLHVLFSPEVSIPQPVVYTKLGSRAHLECIVEAAPA
ATVKWFHHGLPVALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKSVRNA
DMGQYECRASNQISVKSGSVELTGRPMPCLFKINPGTQSSTSHVLVWQTE
SLLPIMEFKLKFRQIPSNNVTRQVRTNWTELTIPAQATNGLIYITTYTLH
GLQPASLYEVSVLARNSFGWSDNSKIVRFATGGEVELPNYSTESELQDDF
TEEDFHNEITQRSEVLSASMMFNSGSVNGRGGISAFIYSLCLINILRLIS
ASFLDH

BO07688.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
wrapper-PA 500 CG10382-PA 1..500 1..500 2605 100 Plus
klg-PA 545 CG6669-PA 102..534 36..494 477 28.4 Plus
CG34353-PB 566 CG34353-PB 83..407 32..369 426 30 Plus
CG34353-PA 566 CG34353-PA 83..407 32..369 426 30 Plus
CG34353-PC 581 CG34353-PC 83..407 32..369 426 30 Plus