Clone Sequence Records
BO07695.3prime Sequence
884 bp (865 high quality bases) assembled on 2006-01-06
> BO07695.3prime
ATGGTCTAGAAAGCTTGCGACATTCGCAATGTTGCTAATTATTTTCTGAA
ATATCTGCACACCGCGCAAATAGATATCCGCCTGAATGAACTCATCGTGA
TCGTGGAGCAATACAGGTGTATTATTCATGGGTGAGAAGCCCAAAGCTGG
GATGCCAACGGCACGAATGTATCTGCTATCAGTTCCTCCGGTAAATATTT
GCGGTTTGATGGATATGTGCATCTCATCGGTAGCTTTCTTGAAAGCAAGC
CAGAAGGGATTACTCCCATCGATGGCGGTGGGCGGGACTTTAGGTTGCTT
CTGTTCGTAAGTGATCTCGATGCCACCACCCACGTCGGCACACCATTTGT
GGAGGTTAGCCTCAAACTCCTCAAAGTCCACATCTAGAGCCAAACGACAA
TCGAAGCAGACCATTAGCAAGGGAGGCACCACATTGCTCTGAACTCCGCC
ACCGAGTTTGGTCAAATTAATGGTCGTTACATCGCCAATGACCAACTCTG
GATTATTCTGCAATCTTTGAACCTGACTCCTACGAAACTCCATCATCTTT
CCGACTATATAGTTCAGTTTTTCACCAGCAGTATTGGGCAGCAAAAGCGA
TCCATGACCAGCAGTCCCACTGATGTTGAAATATACACGCCAAACTGCTC
GTTCTGCATAGAAAAGAGGCAGCTGCTCATCGGGTGAAGCCAATCCCTCG
TCCATTGCAAATCCCACATTAAGAGCACGGAAATCTTCAGTTGGCACAAA
AGGTCTCATGCCATAACGACCGCCCATTTCCTCATCCGCCACAAAGGAAA
TGTGGATAGTTCGTTTGAATTTCGCTCCACTTCTCTTGAGCGCTCTAACT
GCGGCTAGATGCTGCATTCCCACGGACTTCATAT
BO07695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-PA | 1206 | CG6465-RA | 338..1203 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1377 | CG6465-RA | 429..1294 | 884..19 | 4330 | 100 | Minus |
CG17110-RC | 2911 | CG17110-RC | 632..727 | 631..536 | 240 | 83.3 | Minus |
CG6726-RC | 2911 | CG6726-RC | 632..727 | 631..536 | 240 | 83.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10676094..10676377 | 355..638 | 1420 | 100 | Plus |
3R | 32079331 | 3R | 10675643..10675844 | 19..220 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 10676440..10676589 | 637..786 | 750 | 100 | Plus |
3R | 32079331 | 3R | 10675902..10676036 | 220..354 | 675 | 100 | Plus |
3R | 32079331 | 3R | 10676650..10676748 | 786..884 | 495 | 100 | Plus |
3R | 32079331 | 3R | 23092608..23092703 | 631..536 | 240 | 83.3 | Minus |
3R | 32079331 | 3R | 23098473..23098537 | 623..559 | 190 | 86.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:56:12 has no hits.
BO07695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:31 Download gff for
BO07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 338..1206 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:53 Download gff for
BO07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 338..1206 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:04 Download gff for
BO07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 429..1299 | 11..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:13 Download gff for
BO07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 429..1299 | 11..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:13 Download gff for
BO07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10675638..10675844 | 11..220 | 98 | <- | Plus |
3R | 10675903..10676036 | 221..354 | 100 | <- | Plus |
3R | 10676094..10676377 | 355..638 | 100 | <- | Plus |
3R | 10676442..10676588 | 639..785 | 100 | <- | Plus |
3R | 10676650..10676748 | 786..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:04 Download gff for
BO07695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6501360..6501566 | 11..220 | 98 | <- | Plus |
arm_3R | 6501625..6501758 | 221..354 | 100 | <- | Plus |
arm_3R | 6501816..6502099 | 355..638 | 100 | <- | Plus |
arm_3R | 6502164..6502310 | 639..785 | 100 | <- | Plus |
arm_3R | 6502372..6502470 | 786..884 | 100 | | Plus |
BO07695.5prime Sequence
810 bp (729 high quality bases) assembled on 2006-01-06
> BO07695.5prime
GAAGTTATCAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGA
TACAGTACTTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCG
GACTATGCACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGA
TCTGCCAATGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGG
TTTTGACATGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAAC
TCCCACATGGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCC
ATTTGGAGCCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACAC
AAGATATGAAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTC
AAGAGAAGTGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGC
GGATGAGGAAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTG
AAGATTTCCGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCT
TCACCCGATGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCG
TGTATATTTCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGC
CCAATACTGCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAG
TTTCGTAGGAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCAT
TGGCGATGTAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGA
GCAATGTGGT
BO07695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-PA | 1206 | CG6465-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1377 | CG6465-RA | 92..885 | 17..810 | 3970 | 100 | Plus |
CG17110-RC | 2911 | CG17110-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG6726-RC | 2911 | CG6726-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1808..1932 | 246..370 | 190 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10676650..10676995 | 452..107 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 10676167..10676377 | 810..600 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 10676440..10676589 | 601..452 | 750 | 100 | Minus |
3R | 32079331 | 3R | 10677070..10677160 | 107..17 | 455 | 100 | Minus |
3R | 32079331 | 3R | 23092608..23092703 | 607..702 | 240 | 83.3 | Plus |
3R | 32079331 | 3R | 23098473..23098537 | 615..679 | 190 | 86.2 | Plus |
3R | 32079331 | 3R | 23093968..23094092 | 246..370 | 190 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:34:57 has no hits.
BO07695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:32 Download gff for
BO07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:11:54 Download gff for
BO07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:38 Download gff for
BO07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 82..885 | 6..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:31 Download gff for
BO07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 82..885 | 6..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:31 Download gff for
BO07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10676167..10676377 | 600..810 | 100 | <- | Minus |
3R | 10676442..10676588 | 453..599 | 100 | <- | Minus |
3R | 10676650..10676994 | 108..452 | 100 | <- | Minus |
3R | 10677070..10677170 | 6..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:38 Download gff for
BO07695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6502372..6502716 | 108..452 | 100 | <- | Minus |
arm_3R | 6501889..6502099 | 600..810 | 100 | <- | Minus |
arm_3R | 6502164..6502310 | 453..599 | 100 | <- | Minus |
arm_3R | 6502792..6502892 | 6..107 | 96 | | Minus |
BO07695.complete Sequence
1237 bp (1237 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630900
> BO07695.complete
GAAGTTATCAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGA
TACAGTACTTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCG
GACTATGCACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGA
TCTGCCAATGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGG
TTTTGACATGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAAC
TCCCACATGGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCC
ATTTGGAGCCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACAC
AAGATATGAAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTC
AAGAGAAGTGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGC
GGATGAGGAAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTG
AAGATTTCCGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCT
TCACCCGATGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCG
TGTATATTTCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGC
CCAATACTGCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAG
TTTCGTAGGAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCAT
TGGCGATGTAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGA
GCAATGTGGTGCCTCCCTTGCTAATGGTCTGCTTCGATTGTCGTTTGGCT
CTAGATGTGGACTTTGAGGAGTTTGAGGCTAACCTCCACAAATGGTGTGC
CGACGTGGGTGGTGGCATCGAGATCACTTACGAACAGAAGCAACCTAAAG
TCCCGCCCACCGCCATCGATGGGAGTAATCCCTTCTGGCTTGCTTTCAAG
AAAGCTACCGATGAGATGCACATATCCATCAAACCGCAAATATTTACCGG
AGGAACTGATAGCAGATACATTCGTGCCGTTGGCATCCCAGCTTTGGGCT
TCTCACCCATGAATAATACACCTGTATTGCTCCACGATCACGATGAGTTC
ATTCAGGCGGATATCTATTTGCGCGGTGTGCAGATATTTCAGAAAATAAT
TAGCAACATTGCGAATGTCGCAAGCTTTCTAGACCAT
BO07695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1206 | CG6465-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
CG6726-RC | 1206 | CG6726-PC | 591..686 | 607..702 | 240 | 83.3 | Plus |
CG6726-RA | 1206 | CG6726-PA | 591..686 | 607..702 | 240 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1377 | CG6465-RA | 92..1294 | 17..1219 | 6015 | 100 | Plus |
CG17110-RC | 2911 | CG17110-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG6726-RC | 2911 | CG6726-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1808..1932 | 246..370 | 190 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10676650..10676995 | 452..107 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 10676094..10676377 | 883..600 | 1420 | 100 | Minus |
3R | 32079331 | 3R | 10675643..10675844 | 1219..1018 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 10676440..10676589 | 601..452 | 750 | 100 | Minus |
3R | 32079331 | 3R | 10675902..10676036 | 1018..884 | 675 | 100 | Minus |
3R | 32079331 | 3R | 10677070..10677160 | 107..17 | 455 | 100 | Minus |
3R | 32079331 | 3R | 23092608..23092703 | 607..702 | 240 | 83.3 | Plus |
3R | 32079331 | 3R | 23093968..23094092 | 246..370 | 190 | 76.8 | Plus |
3R | 32079331 | 3R | 23098473..23098537 | 615..679 | 190 | 86.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:15:43 has no hits.
BO07695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:10 Download gff for
BO07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 1..1206 | 17..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:52 Download gff for
BO07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 1..1218 | 6..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:37 Download gff for
BO07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 92..1294 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:10 Download gff for
BO07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 1..1218 | 6..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:15 Download gff for
BO07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 92..1294 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:15 Download gff for
BO07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10675641..10675844 | 1018..1221 | 99 | <- | Minus |
3R | 10675903..10676036 | 884..1017 | 100 | <- | Minus |
3R | 10676094..10676377 | 600..883 | 100 | <- | Minus |
3R | 10676442..10676588 | 453..599 | 100 | <- | Minus |
3R | 10676650..10676994 | 108..452 | 100 | <- | Minus |
3R | 10677070..10677160 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:37 Download gff for
BO07695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6501363..6501566 | 1018..1221 | 99 | <- | Minus |
arm_3R | 6501625..6501758 | 884..1017 | 100 | <- | Minus |
arm_3R | 6501816..6502099 | 600..883 | 100 | <- | Minus |
arm_3R | 6502164..6502310 | 453..599 | 100 | <- | Minus |
arm_3R | 6502372..6502716 | 108..452 | 100 | <- | Minus |
arm_3R | 6502792..6502882 | 17..107 | 100 | | Minus |
BO07695.pep Sequence
Translation from 16 to 1237
> BO07695.pep
MATSKWESDEEIQYFREYLRIPSVHPDPDYAPCVEFLRRQANLMDLPMKV
YYPANEQNPVVVLTWKGLNPELPSILLNSHMDVVPVFPENWTHPPFGADI
DEEGRIFARGTQDMKSVGMQHLAAVRALKRSGAKFKRTIHISFVADEEMG
GRYGMRPFVPTEDFRALNVGFAMDEGLASPDEQLPLFYAERAVWRVYFNI
SGTAGHGSLLLPNTAGEKLNYIVGKMMEFRRSQVQRLQNNPELVIGDVTT
INLTKLGGGVQSNVVPPLLMVCFDCRLALDVDFEEFEANLHKWCADVGGG
IEITYEQKQPKVPPTAIDGSNPFWLAFKKATDEMHISIKPQIFTGGTDSR
YIRAVGIPALGFSPMNNTPVLLHDHDEFIQADIYLRGVQIFQKIISNIAN
VASFLDH
BO07695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-PA | 401 | CG6465-PA | 1..401 | 1..401 | 2128 | 100 | Plus |
CG6726-PC | 401 | CG6726-PC | 1..400 | 1..400 | 1409 | 64 | Plus |
CG6726-PA | 401 | CG6726-PA | 1..400 | 1..400 | 1409 | 64 | Plus |
CG6726-PB | 401 | CG6726-PB | 1..400 | 1..400 | 1409 | 64 | Plus |
CG17109-PB | 400 | CG17109-PB | 1..400 | 1..401 | 1300 | 60.3 | Plus |