Clone Sequence Records
BO07702.5prime Sequence
740 bp (739 high quality bases) assembled on 2006-01-06
> BO07702.5prime
GAAGTTATCAGTCGACATGGCCGACGATTGGGAATCCGCAGCAGACAGCG
AGGTGGTCATCCGGCCGACTGCCGCCGCCAGCGTAAACAAGTGGGAGGGC
GAGGACGAGGATGAGGACATCAAGGACAGCTGGGAGGATGAGGAGGAAAA
AAAGGACGAGGAGAAGCCTACGAAAACAGAAGCACCAGCCAAACCGAAGC
CAAATAAGGCGCTAAAAGCCAAACTGGAACAGCAGGCGCTCCTAGAGGAG
GAAGCGGAGGCAAAACGTTTGGCCAACCTATCGCCTGCAGAAAAGTTGGC
TGAGAAGCTGCGATTGCAAAAAATCCAGGAGGCCTCTGATCTCAAGCATG
CCCAGGAAGCGTTCGGTGTGACGAGTACGTGCGGAGGTCTTGACGCCTTC
AACCCCGAGACCAAGGAGGAGTTCAAGGAATTTGGCGCAACGCTCAGCTG
GAAGGTGGGCCAATTCCGCGAGTCGGAGCACTTCCCCCAATTTGTTGAGG
ATCTGGTGCGCAGCCTATGCGTGAATCTGAGCGCTGCTGACATCAAAAAG
GTCAAGATGAACGTGGAAATCTTGCACTCGGAAAAGCTGAAGCTGGAAAA
GGCCAATGCTAAAAAGCCCGCTGGAAAGGGCAAGGGCAAGGTCACTCTCC
GCACCGAAAACGACGACATTGACGGTTACCAAAAGTACGGAAATGACTTC
ACCGAAGACTATGACGACTTCATGGCAAGCTTTCTAGACC
BO07702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12131-PA | 711 | Adam-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adam-RB | 1228 | CG12131-RB | 155..864 | 15..724 | 3550 | 100 | Plus |
Adam-RA | 1363 | CG12131-RA | 290..999 | 15..724 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9969918..9970207 | 238..527 | 1450 | 100 | Plus |
2R | 25286936 | 2R | 9970272..9970409 | 528..665 | 690 | 100 | Plus |
2R | 25286936 | 2R | 9969739..9969854 | 123..238 | 580 | 100 | Plus |
2R | 25286936 | 2R | 9969460..9969553 | 32..125 | 470 | 100 | Plus |
2R | 25286936 | 2R | 9970474..9970533 | 665..724 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:33:19 has no hits.
BO07702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:39 Download gff for
BO07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-PA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:02 Download gff for
BO07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12131-PA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:17 Download gff for
BO07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 285..1003 | 9..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:10 Download gff for
BO07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 285..1003 | 9..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:10 Download gff for
BO07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9969919..9970207 | 239..527 | 100 | -> | Plus |
2R | 9970272..9970408 | 528..664 | 100 | -> | Plus |
2R | 9970474..9970537 | 665..728 | 96 | | Plus |
2R | 9969461..9969552 | 33..124 | 100 | -> | Plus |
2R | 9969741..9969854 | 125..238 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:17 Download gff for
BO07702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5856966..5857057 | 33..124 | 100 | -> | Plus |
arm_2R | 5857246..5857359 | 125..238 | 100 | -> | Plus |
arm_2R | 5857424..5857712 | 239..527 | 100 | -> | Plus |
arm_2R | 5857777..5857913 | 528..664 | 100 | -> | Plus |
arm_2R | 5857979..5858042 | 665..728 | 96 | | Plus |
BO07702.3prime Sequence
740 bp (739 high quality bases) assembled on 2006-01-06
> BO07702.3prime
ATGGTCTAGAAAGCTTGCCATGAAGTCGTCATAGTCTTCGGTGAAGTCAT
TTCCGTACTTTTGGTAACCGTCAATGTCGTCGTTTTCGGTGCGGAGAGTG
ACCTTGCCCTTGCCCTTTCCAGCGGGCTTTTTAGCATTGGCCTTTTCCAG
CTTCAGCTTTTCCGAGTGCAAGATTTCCACGTTCATCTTGACCTTTTTGA
TGTCAGCAGCGCTCAGATTCACGCATAGGCTGCGCACCAGATCCTCAACA
AATTGGGGGAAGTGCTCCGACTCGCGGAATTGGCCCACCTTCCAGCTGAG
CGTTGCGCCAAATTCCTTGAACTCCTCCTTGGTCTCGGGGTTGAAGGCGT
CAAGACCTCCGCACGTACTCGTCACACCGAACGCTTCCTGGGCATGCTTG
AGATCAGAGGCCTCCTGGATTTTTTGCAATCGCAGCTTCTCAGCCAACTT
TTCTGCAGGCGATAGGTTGGCCAAACGTTTTGCCTCCGCTTCCTCCTCTA
GGAGCGCCTGCTGTTCCAGTTTGGCTTTTAGCGCCTTATTTGGCTTCGGT
TTGGCTGGTGCTTCTGTTTTCGTAGGCTTCTCCTCGTCCTTTTTTTCCTC
CTCATCCTCCCAGCTGTCCTTGATGTCCTCATCCTCGTCCTCGCCCTCCC
ACTTGTTTACGCTGGCGGCGGCAGTCGGCCGGATGACCACCTCGCTGTCT
GCTGCGGATTCCCAATCGTCGGCCATGTCGACTGATAACT
BO07702.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12131-PA | 711 | Adam-RA | 1..708 | 726..19 | 3540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adam-RB | 1228 | CG12131-RB | 155..864 | 728..19 | 3550 | 100 | Minus |
Adam-RA | 1363 | CG12131-RA | 290..999 | 728..19 | 3550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9969918..9970207 | 505..216 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 9970272..9970409 | 215..78 | 690 | 100 | Minus |
2R | 25286936 | 2R | 9969739..9969854 | 620..505 | 580 | 100 | Minus |
2R | 25286936 | 2R | 9969460..9969553 | 711..618 | 470 | 100 | Minus |
2R | 25286936 | 2R | 9970474..9970533 | 78..19 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:00:58 has no hits.
BO07702.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:37 Download gff for
BO07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-PA | 1..711 | 16..726 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:01 Download gff for
BO07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12131-PA | 1..711 | 16..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:16 Download gff for
BO07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 285..1003 | 15..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:33 Download gff for
BO07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 285..1003 | 15..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:33 Download gff for
BO07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9969461..9969552 | 619..710 | 100 | -> | Minus |
2R | 9969741..9969854 | 505..618 | 100 | -> | Minus |
2R | 9969919..9970207 | 216..504 | 100 | -> | Minus |
2R | 9970272..9970408 | 79..215 | 100 | -> | Minus |
2R | 9970474..9970537 | 15..78 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:16 Download gff for
BO07702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5856966..5857057 | 619..710 | 100 | -> | Minus |
arm_2R | 5857246..5857359 | 505..618 | 100 | -> | Minus |
arm_2R | 5857424..5857712 | 216..504 | 100 | -> | Minus |
arm_2R | 5857777..5857913 | 79..215 | 100 | -> | Minus |
arm_2R | 5857979..5858042 | 15..78 | 96 | | Minus |
BO07702.complete Sequence
742 bp (742 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630901
> BO07702.complete
GAAGTTATCAGTCGACATGGCCGACGATTGGGAATCCGCAGCAGACAGCG
AGGTGGTCATCCGGCCGACTGCCGCCGCCAGCGTAAACAAGTGGGAGGGC
GAGGACGAGGATGAGGACATCAAGGACAGCTGGGAGGATGAGGAGGAAAA
AAAGGACGAGGAGAAGCCTACGAAAACAGAAGCACCAGCCAAACCGAAGC
CAAATAAGGCGCTAAAAGCCAAACTGGAACAGCAGGCGCTCCTAGAGGAG
GAAGCGGAGGCAAAACGTTTGGCCAACCTATCGCCTGCAGAAAAGTTGGC
TGAGAAGCTGCGATTGCAAAAAATCCAGGAGGCCTCTGATCTCAAGCATG
CCCAGGAAGCGTTCGGTGTGACGAGTACGTGCGGAGGTCTTGACGCCTTC
AACCCCGAGACCAAGGAGGAGTTCAAGGAATTTGGCGCAACGCTCAGCTG
GAAGGTGGGCCAATTCCGCGAGTCGGAGCACTTCCCCCAATTTGTTGAGG
ATCTGGTGCGCAGCCTATGCGTGAATCTGAGCGCTGCTGACATCAAAAAG
GTCAAGATGAACGTGGAAATCTTGCACTCGGAAAAGCTGAAGCTGGAAAA
GGCCAATGCTAAAAAGCCCGCTGGAAAGGGCAAGGGCAAGGTCACTCTCC
GCACCGAAAACGACGACATTGACGGTTACCAAAAGTACGGAAATGACTTC
ACCGAAGACTATGACGACTTCATGGCAAGCTTTCTAGACCAT
BO07702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adam-RB | 711 | CG12131-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Adam-RA | 711 | CG12131-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adam-RB | 1228 | CG12131-RB | 155..864 | 15..724 | 3550 | 100 | Plus |
Adam-RA | 1363 | CG12131-RA | 290..999 | 15..724 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9969918..9970207 | 238..527 | 1450 | 100 | Plus |
2R | 25286936 | 2R | 9970272..9970409 | 528..665 | 690 | 100 | Plus |
2R | 25286936 | 2R | 9969739..9969854 | 123..238 | 580 | 100 | Plus |
2R | 25286936 | 2R | 9969460..9969553 | 32..125 | 470 | 100 | Plus |
2R | 25286936 | 2R | 9970474..9970533 | 665..724 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:49 has no hits.
BO07702.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:54 Download gff for
BO07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:34 Download gff for
BO07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 254..972 | 9..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:36 Download gff for
BO07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 292..999 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:55 Download gff for
BO07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 254..972 | 9..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:28 Download gff for
BO07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adam-RA | 292..999 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:28 Download gff for
BO07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9969461..9969552 | 33..124 | 100 | -> | Plus |
2R | 9969741..9969854 | 125..238 | 100 | -> | Plus |
2R | 9969919..9970207 | 239..527 | 100 | -> | Plus |
2R | 9970272..9970408 | 528..664 | 100 | -> | Plus |
2R | 9970474..9970533 | 665..726 | 96 | | Plus |
2R | 9969220..9969235 | 17..32 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:36 Download gff for
BO07702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5856725..5856740 | 17..32 | 100 | -> | Plus |
arm_2R | 5856966..5857057 | 33..124 | 100 | -> | Plus |
arm_2R | 5857246..5857359 | 125..238 | 100 | -> | Plus |
arm_2R | 5857424..5857712 | 239..527 | 100 | -> | Plus |
arm_2R | 5857777..5857913 | 528..664 | 100 | -> | Plus |
arm_2R | 5857979..5858038 | 665..726 | 96 | | Plus |
BO07702.pep Sequence
Translation from 16 to 742
> BO07702.pep
MADDWESAADSEVVIRPTAAASVNKWEGEDEDEDIKDSWEDEEEKKDEEK
PTKTEAPAKPKPNKALKAKLEQQALLEEEAEAKRLANLSPAEKLAEKLRL
QKIQEASDLKHAQEAFGVTSTCGGLDAFNPETKEEFKEFGATLSWKVGQF
RESEHFPQFVEDLVRSLCVNLSAADIKKVKMNVEILHSEKLKLEKANAKK
PAGKGKGKVTLRTENDDIDGYQKYGNDFTEDYDDFMASFLDH
BO07702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adam-PB | 236 | CG12131-PB | 1..236 | 1..236 | 1220 | 100 | Plus |
Adam-PA | 236 | CG12131-PA | 1..236 | 1..236 | 1220 | 100 | Plus |