Clone Sequence Records
BO07705.5prime Sequence
631 bp (624 high quality bases) assembled on 2006-01-06
> BO07705.5prime
GAAGTTATCAGTCGACATGTGTGGCATATTCGCGTACCTAAACTACTTGA
CGCCCAAGTCGCGACAGGAGGTCCTGGATCTCCTGTTGCAGGGACTGAAG
CGGCTGGAGTACCGCGGCTACGACTCCACGGGCATAGCCATCGATGCGCT
GAACTCTGGCGAGGCACAGTCCATAATGCTGGTGAAGCGCACCGGGAAGG
TGAAGGTGCTGGAGGATGCGGTGGCGGAGGTGTGTCGCGGCCAGGACTAC
TCGCTGCCCATCGACACCCACATAGGCATAGCACACACGCGCTGGGCCAC
CCACGGTGTGCCCTCCGAGGTCAACTCGCATCCGCAGCGATCCGATGAGG
ATAATAGCTTTGTGGTGGTGCACAATGGCATTATAACCAACTACAAGGAT
GTGAAGACGCTGCTGGAGAAGCGCGGATATGTATTTGAGTCCGACACGGA
CACGGAGGTGATTGCCAAGCTGGTACACCACCTGTGGCAGCAGCATCCTG
GCTACACTTTCGGCGAGCTCGTGGAGCAGGCCATTCAGCAGCTGGAGGGC
GCCTTCGCCATCGCCTTCAAGTCGAAGCACTTCCCGGGCGAGTGCGTGGC
CTCCAGGCGAGGCTCACCGCTTCTGGTGGGC
BO07705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1345-PA | 2052 | Gfat2-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 220..834 | 17..631 | 3075 | 100 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 596..930 | 266..600 | 430 | 75.2 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 394..728 | 266..600 | 430 | 75.2 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 356..465 | 17..126 | 205 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28338932..28339546 | 631..17 | 3075 | 100 | Minus |
| 3R | 32079331 | 3R | 4133499..4133833 | 266..600 | 430 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:54:15 has no hits.
BO07705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:42 Download gff for
BO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:08 Download gff for
BO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1345-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:18 Download gff for
BO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 215..834 | 8..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:48 Download gff for
BO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 215..834 | 8..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:48 Download gff for
BO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28338932..28339551 | 8..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:18 Download gff for
BO07705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24164654..24165273 | 8..631 | 99 | | Minus |
BO07705.3prime Sequence
911 bp (794 high quality bases) assembled on 2006-01-06
> BO07705.3prime
ATGGTCTAGAAAGCTTGCCTCCACGGTCACCGACTTGGCCAGGTTCCTGG
GGCAGTCCACGTCGCAGCCGCGGAGCACGGCGATGTGGTAGGACAGCAGC
TGGAGCGGAATCACCGTGAGCACGCCCTGCAGGCAGTCCACGGTCCTCGG
GATCTGCAGCGAACGCGTGGAGAAGGACATGGTCTCGTTGTCGCCCTCCT
CGCAGATTAGGATCGGTCTGCCCTTGCGGGACGTCACCTGCTGCAGTGCA
TTCATGCACTTGGTGTACACCGGATCCCGCAGCACGATCATCAGCACGGG
CATCTCCTTGTCCACCAGGGCCAGTGGTCCGTGTTTCAGTTCTCCAGCCA
GGATTCCTTCGCTGTGCATGTACGTCAGCTCCTTGACTTTCAGTGCGCCC
TCCAAACAGGTGGCGAAGTTGAAGCCCCTGCCCATAATGAGCAGCGACTT
GTGCTCGTACAACTCCTTGGCAAGCTGCTGCACCTGCGAGTTCAGCTTGA
GGACAGTCCTAATGTGCTCGTCCAGCTGCGATAGGCCATCGATGATCTCC
AAGCGGCGCTGTTGCAGCGAGAGACGATCCTCCGACATGACCAAGGCGAA
CATAACCAGCGAAATGAACTGGGAGGTGTAGGCCTTCGTGGAGGCCACTC
CGATCTCGGGTCCAGCGTTGATGTGGACGCCACAGTGCGACTCGCGGCAG
ATGCTGCTGCCCACCGTGTTGGTAACGCCCACGATGAGCGCTCCTCGCTG
CTTGCAGTATCTGAGCGCCATCAGGGTGTCCGCTGTCTCGCCCGATTGGG
AGATGAAGAAGCACACGTCGTCCCGGAAAATGGGCGTGTTTCTGTCCAGA
AAATCGGAGGCCAGTTCCACCATAACGGGCAGTTCGGTCAGTTCCTCCAG
CAGCTGCCTGG
BO07705.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1345-PA | 2052 | Gfat2-RA | 1157..2049 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 1376..2268 | 911..19 | 4465 | 100 | Minus |
| Gfat1-RH | 2601 | CG12449-RH | 1520..2410 | 909..19 | 1245 | 76.5 | Minus |
| Gfat1-RD | 2363 | CG12449-RD | 1282..2172 | 909..19 | 1245 | 76.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28337870..28338390 | 391..911 | 2605 | 100 | Plus |
| 3R | 32079331 | 3R | 28337296..28337668 | 19..391 | 1865 | 100 | Plus |
| 3R | 32079331 | 3R | 4136742..4137094 | 909..557 | 715 | 80.2 | Minus |
| 3R | 32079331 | 3R | 4137319..4137691 | 391..19 | 560 | 76.7 | Minus |
Blast to na_te.dros performed 2015-02-10 15:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 1157..1261 | 272..168 | 128 | 64.2 | Minus |
BO07705.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:41 Download gff for
BO07705.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-PA | 1157..2052 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:07 Download gff for
BO07705.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1345-PA | 1157..2052 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:24 Download gff for
BO07705.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 1376..2273 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:18 Download gff for
BO07705.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 1376..2273 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:18 Download gff for
BO07705.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28337291..28337667 | 13..390 | 99 | <- | Plus |
| 3R | 28337870..28338390 | 391..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:24 Download gff for
BO07705.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24163013..24163389 | 13..390 | 99 | <- | Plus |
| arm_3R | 24163592..24164112 | 391..911 | 100 | | Plus |
BO07705.complete Sequence
2083 bp (2083 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630902
> BO07705.complete
GAAGTTATCAGTCGACATGTGTGGCATATTCGCGTACCTAAACTACTTGA
CGCCCAAGTCGCGACAGGAGGTCCTGGATCTCCTGTTGCAGGGACTGAAG
CGGCTGGAGTACCGCGGCTACGACTCCACGGGCATAGCCATCGATGCGCT
GAACTCTGGCGAGGCACAGTCCATAATGCTGGTGAAGCGCACCGGGAAGG
TGAAGGTGCTGGAGGATGCGGTGGCGGAGGTGTGTCGCGGCCAGGACTAC
TCGCTGCCCATCGACACCCACATAGGCATAGCACACACGCGCTGGGCCAC
CCACGGTGTGCCCTCCGAGGTCAACTCGCATCCGCAGCGATCCGATGAGG
ATAATAGCTTTGTGGTGGTGCACAATGGCATTATAACCAACTACAAGGAT
GTGAAGACGCTGCTGGAGAAGCGCGGATATGTATTTGAGTCCGACACGGA
CACGGAGGTGATTGCCAAGCTGGTACACCACCTGTGGCAGCAGCATCCTG
GCTACACTTTCGGCGAGCTCGTGGAGCAGGCCATTCAGCAGCTGGAGGGC
GCCTTCGCCATCGCCTTCAAGTCGAAGCACTTCCCGGGCGAGTGCGTGGC
CTCCAGGCGAGGCTCACCGCTTCTGGTGGGCATCAAGGCCAAGACCAAGC
TGGCCACCGATCACATACCCATCCTGTACGCCAAGGCCCATCGGCCACAT
GGTCAGCCGCAGCAGCAGGCCTATCAACTATTGCCGCCCGGCGATTGCAA
CGCCGAGTTTCAACCGCTGGAGCGCAAGGAAGTGGAGTACTTCTTCGCCT
CGGACGCATCGGCTGTTATAGAGCACACGAATCGGGTGATTTACCTGGAA
GATGACGACGTGGCCGCCGTCAAGAGCGATGGCACGCTCAGCATTCATCG
CCTAAACAAATCATCCGATGATCCGCACGCCCGCGAGATCATCACGCTGA
AAATGGAGATCCAGCAGATCATGAAGGGCAACTACGACTACTTTATGCTG
AAGGAGATCTTCGAGCAGCCGGAATCCGTGGTCAACACCATGCGCGGCAG
GATGAGGTTCGATACGCAGACCGTGGTTCTGGGTGGCATCAAGGAGTACA
TACCGGAGATCAAGCGCTGCCGCCGCTTGATGCTAATTGCGTGCGGCACA
TCCTACCACAGTGCGGTGGCCACCAGGCAGCTGCTGGAGGAACTGACCGA
ACTGCCCGTTATGGTGGAACTGGCCTCCGATTTTCTGGACAGAAACACGC
CCATTTTCCGGGACGACGTGTGCTTCTTCATCTCCCAATCGGGCGAGACA
GCGGACACCCTGATGGCGCTCAGATACTGCAAGCAGCGAGGAGCGCTCAT
CGTGGGCGTTACCAACACGGTGGGCAGCAGCATCTGCCGCGAGTCGCACT
GTGGCGTCCACATCAACGCTGGACCCGAGATCGGAGTGGCCTCCACGAAG
GCCTACACCTCCCAGTTCATTTCGCTGGTTATGTTCGCCTTGGTCATGTC
GGAGGATCGTCTCTCGCTGCAACAGCGCCGCTTGGAGATCATCGATGGCC
TATCGCAGCTGGACGAGCACATTAGGACTGTCCTCAAGCTGAACTCGCAG
GTGCAGCAGCTTGCCAAGGAGTTGTACGAGCACAAGTCGCTGCTCATTAT
GGGCAGGGGCTTCAACTTCGCCACCTGTTTGGAGGGCGCACTGAAAGTCA
AGGAGCTGACGTACATGCACAGCGAAGGAATCCTGGCTGGAGAACTGAAA
CACGGACCACTGGCCCTGGTGGACAAGGAGATGCCCGTGCTGATGATCGT
GCTGCGGGATCCGGTGTACACCAAGTGCATGAATGCACTGCAGCAGGTGA
CGTCCCGCAAGGGCAGACCGATCCTAATCTGCGAGGAGGGCGACAACGAG
ACCATGTCCTTCTCCACGCGTTCGCTGCAGATCCCGAGGACCGTGGACTG
CCTGCAGGGCGTGCTCACGGTGATTCCGCTCCAGCTGCTGTCCTACCACA
TCGCCGTGCTCCGCGGCTGCGACGTGGACTGCCCCAGGAACCTGGCCAAG
TCGGTGACCGTGGAGGCAAGCTTTCTAGACCAT
BO07705.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2052 | CG1345-PA | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| Gfat1-RH | 2058 | CG12449-PH | 769..2055 | 776..2065 | 1750 | 75.9 | Plus |
| Gfat1-RD | 2022 | CG12449-PD | 733..2019 | 776..2065 | 1750 | 75.9 | Plus |
| Gfat1-RH | 2058 | CG12449-PH | 241..655 | 266..680 | 455 | 74 | Plus |
| Gfat1-RH | 2058 | CG12449-PH | 1..110 | 17..126 | 205 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 220..2268 | 17..2065 | 10245 | 100 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 1124..2410 | 776..2065 | 1750 | 75.9 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 886..2172 | 776..2065 | 1750 | 75.9 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 596..1010 | 266..680 | 455 | 74 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 356..465 | 17..126 | 205 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28337870..28339546 | 1693..17 | 8385 | 100 | Minus |
| 3R | 32079331 | 3R | 28337296..28337668 | 2065..1693 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 4136484..4137094 | 917..1527 | 1150 | 79.2 | Plus |
| 3R | 32079331 | 3R | 4137319..4137691 | 1693..2065 | 560 | 76.7 | Plus |
| 3R | 32079331 | 3R | 4133499..4133913 | 266..680 | 455 | 74 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:09:42 has no hits.
BO07705.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:31 Download gff for
BO07705.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 1..2052 | 17..2066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:18 Download gff for
BO07705.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 218..2276 | 8..2071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:57 Download gff for
BO07705.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 220..2268 | 17..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:32 Download gff for
BO07705.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 218..2276 | 8..2071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:06 Download gff for
BO07705.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 220..2268 | 17..2067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:06 Download gff for
BO07705.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28337870..28339546 | 17..1693 | 100 | | Minus |
| 3R | 28337294..28337667 | 1694..2067 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:57 Download gff for
BO07705.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24163016..24163389 | 1694..2067 | 99 | <- | Minus |
| arm_3R | 24163592..24165268 | 17..1693 | 100 | | Minus |
BO07705.pep Sequence
Translation from 16 to 2083
> BO07705.pep
MCGIFAYLNYLTPKSRQEVLDLLLQGLKRLEYRGYDSTGIAIDALNSGEA
QSIMLVKRTGKVKVLEDAVAEVCRGQDYSLPIDTHIGIAHTRWATHGVPS
EVNSHPQRSDEDNSFVVVHNGIITNYKDVKTLLEKRGYVFESDTDTEVIA
KLVHHLWQQHPGYTFGELVEQAIQQLEGAFAIAFKSKHFPGECVASRRGS
PLLVGIKAKTKLATDHIPILYAKAHRPHGQPQQQAYQLLPPGDCNAEFQP
LERKEVEYFFASDASAVIEHTNRVIYLEDDDVAAVKSDGTLSIHRLNKSS
DDPHAREIITLKMEIQQIMKGNYDYFMLKEIFEQPESVVNTMRGRMRFDT
QTVVLGGIKEYIPEIKRCRRLMLIACGTSYHSAVATRQLLEELTELPVMV
ELASDFLDRNTPIFRDDVCFFISQSGETADTLMALRYCKQRGALIVGVTN
TVGSSICRESHCGVHINAGPEIGVASTKAYTSQFISLVMFALVMSEDRLS
LQQRRLEIIDGLSQLDEHIRTVLKLNSQVQQLAKELYEHKSLLIMGRGFN
FATCLEGALKVKELTYMHSEGILAGELKHGPLALVDKEMPVLMIVLRDPV
YTKCMNALQQVTSRKGRPILICEEGDNETMSFSTRSLQIPRTVDCLQGVL
TVIPLQLLSYHIAVLRGCDVDCPRNLAKSVTVEASFLDH
BO07705.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-PA | 683 | CG1345-PA | 1..683 | 1..683 | 3516 | 100 | Plus |
| Gfat1-PH | 685 | CG12449-PH | 1..685 | 1..683 | 2924 | 82.6 | Plus |
| Gfat1-PD | 673 | CG12449-PD | 1..673 | 1..683 | 2916 | 83.3 | Plus |
| Gfat1-PA | 694 | CG12449-PA | 1..694 | 1..683 | 2916 | 81.6 | Plus |
| Gfat1-PN | 694 | CG12449-PN | 1..694 | 1..683 | 2916 | 81.6 | Plus |
