Clone BO07708 Report

Search the DGRC for BO07708

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG32548-RC
Protein status:BO07708.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO07708.3prime Sequence

932 bp (842 high quality bases) assembled on 2006-01-06

> BO07708.3prime
ATGGTCTAGAAAGCTTGCGAAGCTGTAGTTGAGATTGCCGCTTGAGAAGC
TCACATGAGAGACGTCCGGCGATTGCTGGTAGGTGGGGGATCCCAGCACG
GAGGACATGGGAACGGCCATCCCATAGCTCTGGCGGGTGGTGGGCGCCAA
CTGGCTGGTGGCGAACTGATGGGCCACCGACTGCTGCTGGTCACGGAGCA
CGTCCTGCTGCTGCTGCTGCATGAAGCCCATGTGCTGTTGCGTGGAGTAG
AAGTCTCCACTTGCTCCCCCTCCCAGACTGTTGGAGCGCAAAGGCGCTGA
TCCGATCACTCCTCCCGGGATGACTCCAACTGGACCTCCTCTTACTGGAC
CTCCGGGCACAATGGATCCGGATGCAAGGCGCTCGGGCTGCAGGCCATTG
TTGCTGAACTGCGGCCGACGGTAGGCGAAGCGGCCAGCTGCGTTCTGTGC
TGCCACGCCCGCCGGAGCGCCTCCCACATCGGCGGGAGCAGCTATCTGGG
GGGTTTGGGGTTGAATCTGATGAGCCGGTGATGTTAGGCCGCCGGATACA
TCGGGATAGTAGTGGTAGAGCTTCTGCAGCAGGTGCTGCTGCTGCTGCTC
GAACTCGGCTCGTTGGCGCTGATAATCGAGGAAGGCGGCGTGCATCTGGT
CCGCATAGCTGGGCATGTTGACCACGCCACCGCTAACGCCCACTCCTGGT
CCGGATGCAGCTGCTACCTGCGGCGATGTGGCGGCCAGGAGTTGCTGCTG
CTGCTGCGCCAGGAGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGTT
GCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGGAGCAGCGAGTTG
GGCGTGACCTTCAGCTTACCATCGGGCCCGGAATCCTGGCTGCGAGTACA
CGGCAGGATACTGCTGTCCCGACGGCGAGAAT

BO07708.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PB 1158 CG32548-RB 299..1155 875..19 4285 100 Minus
CG32548-PC 1065 CG32548-RC 206..1062 875..19 4285 100 Minus
CG32548-PB 1158 CG32548-RB 243..300 932..875 290 100 Minus
CG32548-PC 1065 CG32548-RC 150..207 932..875 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1382 CG32548-RC 323..1235 932..19 4545 99.9 Minus
CG32548-RB 1475 CG32548-RB 416..1328 932..19 4545 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18435866..18436778 19..932 4520 99.9 Plus
Blast to na_te.dros performed 2015-02-12 07:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..7102 844..568 298 59.5 Minus

BO07708.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:47 Download gff for BO07708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 150..1065 15..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:15 Download gff for BO07708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 150..1065 15..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:10 Download gff for BO07708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 416..1331 15..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:37 Download gff for BO07708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 416..1331 15..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:37 Download gff for BO07708.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18435863..18436778 15..932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:10 Download gff for BO07708.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18329896..18330811 15..932 99   Plus

BO07708.5prime Sequence

836 bp (834 high quality bases) assembled on 2006-01-06

> BO07708.5prime
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTTGCGCTCCAACAGTCTGGGAGGGGGGAGC

BO07708.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PC 1065 CG32548-RC 1..791 17..807 3955 100 Plus
CG32548-PB 1158 CG32548-RB 220..884 143..807 3325 100 Plus
CG32548-PC 1065 CG32548-RC 789..815 806..832 135 100 Plus
CG32548-PB 1158 CG32548-RB 882..908 806..832 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1382 CG32548-RC 173..988 16..832 4060 99.9 Plus
CG32548-RB 1475 CG32548-RB 393..1081 143..832 3425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18436113..18436801 832..143 3400 99.9 Minus
X 23542271 X 18437002..18437128 142..16 635 100 Minus
Blast to na_te.dros performed 2015-02-12 14:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..7102 253..529 298 59.5 Plus

BO07708.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:48 Download gff for BO07708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 1..818 17..836 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:17 Download gff for BO07708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-PC 1..818 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:16 Download gff for BO07708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..991 9..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:07 Download gff for BO07708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..991 9..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:07 Download gff for BO07708.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18436110..18436801 143..836 99 <- Minus
X 18437002..18437136 9..142 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:16 Download gff for BO07708.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18330143..18330834 143..836 99 <- Minus
arm_X 18331035..18331169 9..142 97   Minus

BO07708.complete Sequence

1096 bp (1096 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630903

> BO07708.complete
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTAC
TCCACGCAACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGGACGTGCT
CCGTGACCAGCAGCAGTCGGTGGCCCATCAGTTCGCCACCAGCCAGTTGG
CGCCCACCACCCGCCAGAGCTATGGGATGGCCGTTCCCATGTCCTCCGTG
CTGGGATCCCCCACCTACCAGCAATCGCCGGACGTCTCTCATGTGAGCTT
CTCAAGCGGCAATCTCAACTACAGCTTCGCAAGCTTTCTAGACCAT

BO07708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1065 CG32548-PC 1..1062 17..1078 5310 100 Plus
CG32548-RB 1158 CG32548-PB 220..1155 143..1078 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1382 CG32548-RC 173..1235 16..1078 5315 100 Plus
CG32548-RB 1475 CG32548-RB 393..1328 143..1078 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18435866..18436801 1078..143 4680 100 Minus
X 23542271 X 18437002..18437128 142..16 635 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:44:45 has no hits.

BO07708.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:56 Download gff for BO07708.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1065 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:36 Download gff for BO07708.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..1238 9..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:02 Download gff for BO07708.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 174..1235 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:56 Download gff for BO07708.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 165..1238 9..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:23 Download gff for BO07708.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 174..1235 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:23 Download gff for BO07708.complete
Subject Subject Range Query Range Percent Splice Strand
X 18435864..18436801 143..1080 99 <- Minus
X 18437002..18437127 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:02 Download gff for BO07708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18329897..18330834 143..1080 99 <- Minus
arm_X 18331035..18331160 17..142 100   Minus

BO07708.pep Sequence

Translation from 16 to 1096

> BO07708.pep
MRSSKVRGGNASRLADAEGQWGKGCLGSQHSIIKNHGRGLSSQTPTQFGG
FSPSGQQYPAVYSQPGFRADGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQ
QQQQQLLAQQQQQLLAATSPQVAAASGPGVGVSGGVVNMPSYADQMHAAF
LDYQRQRAEFEQQQQHLLQKLYHYYPDVSGGLTSPAHQIQPQTPQIAAPA
DVGGAPAGVAAQNAAGRFAYRRPQFSNNGLQPERLASGSIVPGGPVRGGP
VGVIPGGVIGSAPLRSNSLGGGASGDFYSTQQHMGFMQQQQQDVLRDQQQ
SVAHQFATSQLAPTTRQSYGMAVPMSSVLGSPTYQQSPDVSHVSFSSGNL
NYSFASFLDH

BO07708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PC 354 CG32548-PC 1..354 1..354 1833 100 Plus
CG32548-PB 385 CG32548-PB 74..385 43..354 1612 100 Plus
ptip-PA 2294 CG32133-PA 1158..1367 80..302 171 32.9 Plus
ptip-PA 2294 CG32133-PA 229..346 82..200 167 40.5 Plus
mam-PD 1594 CG8118-PD 774..1047 56..300 167 29.6 Plus
mam-PB 1594 CG8118-PB 774..1047 56..300 167 29.6 Plus
ptip-PA 2294 CG32133-PA 846..988 52..195 165 37.7 Plus