Clone Sequence Records
BO07708.3prime Sequence
932 bp (842 high quality bases) assembled on 2006-01-06
> BO07708.3prime
ATGGTCTAGAAAGCTTGCGAAGCTGTAGTTGAGATTGCCGCTTGAGAAGC
TCACATGAGAGACGTCCGGCGATTGCTGGTAGGTGGGGGATCCCAGCACG
GAGGACATGGGAACGGCCATCCCATAGCTCTGGCGGGTGGTGGGCGCCAA
CTGGCTGGTGGCGAACTGATGGGCCACCGACTGCTGCTGGTCACGGAGCA
CGTCCTGCTGCTGCTGCTGCATGAAGCCCATGTGCTGTTGCGTGGAGTAG
AAGTCTCCACTTGCTCCCCCTCCCAGACTGTTGGAGCGCAAAGGCGCTGA
TCCGATCACTCCTCCCGGGATGACTCCAACTGGACCTCCTCTTACTGGAC
CTCCGGGCACAATGGATCCGGATGCAAGGCGCTCGGGCTGCAGGCCATTG
TTGCTGAACTGCGGCCGACGGTAGGCGAAGCGGCCAGCTGCGTTCTGTGC
TGCCACGCCCGCCGGAGCGCCTCCCACATCGGCGGGAGCAGCTATCTGGG
GGGTTTGGGGTTGAATCTGATGAGCCGGTGATGTTAGGCCGCCGGATACA
TCGGGATAGTAGTGGTAGAGCTTCTGCAGCAGGTGCTGCTGCTGCTGCTC
GAACTCGGCTCGTTGGCGCTGATAATCGAGGAAGGCGGCGTGCATCTGGT
CCGCATAGCTGGGCATGTTGACCACGCCACCGCTAACGCCCACTCCTGGT
CCGGATGCAGCTGCTACCTGCGGCGATGTGGCGGCCAGGAGTTGCTGCTG
CTGCTGCGCCAGGAGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGTT
GCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGGAGCAGCGAGTTG
GGCGTGACCTTCAGCTTACCATCGGGCCCGGAATCCTGGCTGCGAGTACA
CGGCAGGATACTGCTGTCCCGACGGCGAGAAT
BO07708.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-PB | 1158 | CG32548-RB | 299..1155 | 875..19 | 4285 | 100 | Minus |
CG32548-PC | 1065 | CG32548-RC | 206..1062 | 875..19 | 4285 | 100 | Minus |
CG32548-PB | 1158 | CG32548-RB | 243..300 | 932..875 | 290 | 100 | Minus |
CG32548-PC | 1065 | CG32548-RC | 150..207 | 932..875 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1382 | CG32548-RC | 323..1235 | 932..19 | 4545 | 99.9 | Minus |
CG32548-RB | 1475 | CG32548-RB | 416..1328 | 932..19 | 4545 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18435866..18436778 | 19..932 | 4520 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 07:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7102 | 844..568 | 298 | 59.5 | Minus |
BO07708.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:47 Download gff for
BO07708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 150..1065 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:15 Download gff for
BO07708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 150..1065 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:10 Download gff for
BO07708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RB | 416..1331 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:37 Download gff for
BO07708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RB | 416..1331 | 15..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:37 Download gff for
BO07708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18435863..18436778 | 15..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:10 Download gff for
BO07708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18329896..18330811 | 15..932 | 99 | | Plus |
BO07708.5prime Sequence
836 bp (834 high quality bases) assembled on 2006-01-06
> BO07708.5prime
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTTGCGCTCCAACAGTCTGGGAGGGGGGAGC
BO07708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-PC | 1065 | CG32548-RC | 1..791 | 17..807 | 3955 | 100 | Plus |
CG32548-PB | 1158 | CG32548-RB | 220..884 | 143..807 | 3325 | 100 | Plus |
CG32548-PC | 1065 | CG32548-RC | 789..815 | 806..832 | 135 | 100 | Plus |
CG32548-PB | 1158 | CG32548-RB | 882..908 | 806..832 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1382 | CG32548-RC | 173..988 | 16..832 | 4060 | 99.9 | Plus |
CG32548-RB | 1475 | CG32548-RB | 393..1081 | 143..832 | 3425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18436113..18436801 | 832..143 | 3400 | 99.9 | Minus |
X | 23542271 | X | 18437002..18437128 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 14:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7102 | 253..529 | 298 | 59.5 | Plus |
BO07708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:26:48 Download gff for
BO07708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 1..818 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:17 Download gff for
BO07708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-PC | 1..818 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:16 Download gff for
BO07708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..991 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:07 Download gff for
BO07708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..991 | 9..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:07 Download gff for
BO07708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18436110..18436801 | 143..836 | 99 | <- | Minus |
X | 18437002..18437136 | 9..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:16 Download gff for
BO07708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18330143..18330834 | 143..836 | 99 | <- | Minus |
arm_X | 18331035..18331169 | 9..142 | 97 | | Minus |
BO07708.complete Sequence
1096 bp (1096 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630903
> BO07708.complete
GAAGTTATCAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCA
GTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCC
CAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCC
CACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGT
ACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAAC
TCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGC
AGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCA
GGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCA
GATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGC
AGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTA
TCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCA
GATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCAC
AGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAAT
GGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCC
AGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAG
CGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTAC
TCCACGCAACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGGACGTGCT
CCGTGACCAGCAGCAGTCGGTGGCCCATCAGTTCGCCACCAGCCAGTTGG
CGCCCACCACCCGCCAGAGCTATGGGATGGCCGTTCCCATGTCCTCCGTG
CTGGGATCCCCCACCTACCAGCAATCGCCGGACGTCTCTCATGTGAGCTT
CTCAAGCGGCAATCTCAACTACAGCTTCGCAAGCTTTCTAGACCAT
BO07708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1065 | CG32548-PC | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG32548-RB | 1158 | CG32548-PB | 220..1155 | 143..1078 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-RC | 1382 | CG32548-RC | 173..1235 | 16..1078 | 5315 | 100 | Plus |
CG32548-RB | 1475 | CG32548-RB | 393..1328 | 143..1078 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18435866..18436801 | 1078..143 | 4680 | 100 | Minus |
X | 23542271 | X | 18437002..18437128 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:45 has no hits.
BO07708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:56 Download gff for
BO07708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 1..1065 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:36 Download gff for
BO07708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..1238 | 9..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:02 Download gff for
BO07708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 174..1235 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:56 Download gff for
BO07708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 165..1238 | 9..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:23 Download gff for
BO07708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32548-RC | 174..1235 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:23 Download gff for
BO07708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18435864..18436801 | 143..1080 | 99 | <- | Minus |
X | 18437002..18437127 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:02 Download gff for
BO07708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18329897..18330834 | 143..1080 | 99 | <- | Minus |
arm_X | 18331035..18331160 | 17..142 | 100 | | Minus |
BO07708.pep Sequence
Translation from 16 to 1096
> BO07708.pep
MRSSKVRGGNASRLADAEGQWGKGCLGSQHSIIKNHGRGLSSQTPTQFGG
FSPSGQQYPAVYSQPGFRADGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQ
QQQQQLLAQQQQQLLAATSPQVAAASGPGVGVSGGVVNMPSYADQMHAAF
LDYQRQRAEFEQQQQHLLQKLYHYYPDVSGGLTSPAHQIQPQTPQIAAPA
DVGGAPAGVAAQNAAGRFAYRRPQFSNNGLQPERLASGSIVPGGPVRGGP
VGVIPGGVIGSAPLRSNSLGGGASGDFYSTQQHMGFMQQQQQDVLRDQQQ
SVAHQFATSQLAPTTRQSYGMAVPMSSVLGSPTYQQSPDVSHVSFSSGNL
NYSFASFLDH
BO07708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32548-PC | 354 | CG32548-PC | 1..354 | 1..354 | 1833 | 100 | Plus |
CG32548-PB | 385 | CG32548-PB | 74..385 | 43..354 | 1612 | 100 | Plus |
ptip-PA | 2294 | CG32133-PA | 1158..1367 | 80..302 | 171 | 32.9 | Plus |
ptip-PA | 2294 | CG32133-PA | 229..346 | 82..200 | 167 | 40.5 | Plus |
mam-PD | 1594 | CG8118-PD | 774..1047 | 56..300 | 167 | 29.6 | Plus |
mam-PB | 1594 | CG8118-PB | 774..1047 | 56..300 | 167 | 29.6 | Plus |
ptip-PA | 2294 | CG32133-PA | 846..988 | 52..195 | 165 | 37.7 | Plus |