Clone Sequence Records
BO07719.3prime Sequence
874 bp (792 high quality bases) assembled on 2006-01-06
> BO07719.3prime
ATGGTCTAGAAAGCTTGCGTAGGCCGGCGAGTTGAAGGCACCGTTGTATC
CGCCCCCATATCCACTGCCATAGCCAAAGGCATTGTGATTGTTCAGCACT
CCAAATGGTCCCTTGTGGACGCCATCCTCCTTGTACTCGGTGTTCATCGA
GAAATGATGGTCCCAATGGCTCGGATCAGCGGGATTGTGAGCCGGATAGC
GATGATAGTTCATGCCGCTGGTGGCAGGAGCCTGACCAGCTGCTCCGGGC
ACTCCTGCCACTCCAGGTGCTCCCGGAACTCCAGCTACTCCAGGAACTCC
TGGTTGAGCCACAGCTCCGGGTAGCACTCCATAGGCGGGGAACTGGGCTG
GTTGAGGGTACGCTGGGTACTGTGGCAAGTATACTCCGGGGTAGGGATAG
CCAGGATAGGCACCAGTTCCCGGGAAGTAACCAGGTGCTCCTGCACCCAC
TGGCTGCTGGGGAGGAACTCCCACCGGATACTGAGCAGGAACTGCTCCAG
CAACAGGATAGCCAGGAGGAGAAACAGCACCTGCACTTTGGTAACCACCG
GATGATGAGGATCCTCCTGAAGAGCCTCCTGCAGCTGGGTACGGAACTGG
AGCCTGTTGTCCAGGAAAACCCGGAGGCGGATAAGCGGGAATCTGGTGAC
CTCCTGTAATTGTGAGTGCCGGATTTGGTGACTGGTTGCCAGGAAAAACA
ACGGAGTTCGTACTGGCCACTCGTACGCCAGAGCCACCCTGCTCATGGCC
ATGGGCATCGTCGATGGATCCAGTTGCGCCCGCATAACCCGATCCCAGCT
GACCAAGGCCAGGATAAAGTTGCGAATTGAGATTGGCCCGCTGGCGATGG
CGACTGCTGGTAATGCCTCCCGTC
BO07719.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7021-PA | 990 | Ela-RA | 132..987 | 874..19 | 4280 | 100 | Minus |
CG7021-PB | 930 | Ela-RB | 293..927 | 653..19 | 3175 | 100 | Minus |
CG7021-PB | 930 | Ela-RB | 132..293 | 874..713 | 810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 2135 | CG7021-RC | 152..1014 | 874..12 | 4285 | 99.8 | Minus |
Ela-RA | 1187 | CG7021-RA | 152..1014 | 874..12 | 4285 | 99.8 | Minus |
Ela-RB | 1127 | CG7021-RB | 313..954 | 653..12 | 3180 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24866010..24866530 | 532..12 | 2575 | 99.6 | Minus |
3R | 32079331 | 3R | 24865501..24865846 | 874..529 | 1730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:18:59 has no hits.
BO07719.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:08 Download gff for
BO07719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-PA | 132..990 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:47 Download gff for
BO07719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7021-PA | 132..990 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:07:42 Download gff for
BO07719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 152..1014 | 12..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:16 Download gff for
BO07719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 152..1014 | 12..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:16 Download gff for
BO07719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24865501..24865844 | 531..874 | 100 | -> | Minus |
3R | 24866012..24866530 | 12..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:07:42 Download gff for
BO07719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20691223..20691566 | 531..874 | 100 | -> | Minus |
arm_3R | 20691734..20692252 | 12..530 | 99 | | Minus |
BO07719.5prime Sequence
921 bp (874 high quality bases) assembled on 2006-01-06
> BO07719.5prime
GAAGTTATCAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTC
TGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGAC
GAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGAC
GGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGC
AACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACT
GGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACG
AGTGGCCAGTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATC
CGGCACTCACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCG
GGTTTTCCTGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTC
TTCAGGAGGATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTT
CTCCTCCTGGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTG
GGAGTTCCTCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCC
GGGAACTGGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCAC
AGTACCCAGCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTA
CCCGGAGCTGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGG
AGCACCTGGAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCA
CCAGCGGCATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCG
AGCCATTGGGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGG
CGTCCACAAAGGGACATTTGG
BO07719.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7021-PA | 990 | Ela-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
CG7021-PB | 930 | Ela-RB | 293..833 | 369..909 | 2705 | 100 | Plus |
CG7021-PB | 930 | Ela-RB | 1..293 | 17..309 | 1465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 2135 | CG7021-RC | 20..925 | 16..921 | 4485 | 99.8 | Plus |
Ela-RA | 1187 | CG7021-RA | 20..925 | 16..921 | 4485 | 99.8 | Plus |
Ela-RB | 1127 | CG7021-RB | 313..865 | 369..921 | 2720 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24865369..24865846 | 16..493 | 2390 | 100 | Plus |
3R | 32079331 | 3R | 24866010..24866441 | 490..921 | 2115 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:34:46 has no hits.
BO07719.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:09 Download gff for
BO07719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:48 Download gff for
BO07719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7021-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:24 Download gff for
BO07719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 14..925 | 10..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:29 Download gff for
BO07719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 14..925 | 10..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:29 Download gff for
BO07719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24865363..24865844 | 10..491 | 99 | -> | Plus |
3R | 24866012..24866441 | 492..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:24 Download gff for
BO07719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20691085..20691566 | 10..491 | 99 | -> | Plus |
arm_3R | 20691734..20692163 | 492..921 | 99 | | Plus |
BO07719.complete Sequence
1021 bp (1021 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630905
> BO07719.complete
GAAGTTATCAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTC
TGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGAC
GAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGAC
GGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGC
AACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACT
GGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACG
AGTGGCCAGTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATC
CGGCACTCACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCG
GGTTTTCCTGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTC
TTCAGGAGGATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTT
CTCCTCCTGGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTG
GGAGTTCCTCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCC
GGGAACTGGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCAC
AGTACCCAGCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTA
CCCGGAGCTGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGG
AGCACCTGGAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCA
CCAGCGGCATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCG
AGCCATTGGGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGG
CGTCCACAAGGGACCATTTGGAGTGCTGAACAATCACAATGCCTTTGGCT
ATGGCAGTGGATATGGGGGCGGATACAACGGTGCCTTCAACTCGCCGGCC
TACGCAAGCTTTCTAGACCAT
BO07719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 990 | CG7021-PC | 1..987 | 17..1003 | 4935 | 100 | Plus |
Ela-RA | 990 | CG7021-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Ela-RB | 930 | CG7021-PB | 293..927 | 369..1003 | 3175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-RC | 2135 | CG7021-RC | 20..1014 | 16..1010 | 4945 | 99.8 | Plus |
Ela-RA | 1187 | CG7021-RA | 20..1014 | 16..1010 | 4945 | 99.8 | Plus |
Ela-RB | 1127 | CG7021-RB | 313..954 | 369..1010 | 3180 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24866010..24866530 | 490..1010 | 2575 | 99.6 | Plus |
3R | 32079331 | 3R | 24865369..24865846 | 16..493 | 2390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:07:53 has no hits.
BO07719.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:16 Download gff for
BO07719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 1..990 | 17..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:58 Download gff for
BO07719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 13..1013 | 10..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:27 Download gff for
BO07719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 26..1007 | 22..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:16 Download gff for
BO07719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 13..1013 | 10..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:03 Download gff for
BO07719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ela-RA | 26..1007 | 22..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:03 Download gff for
BO07719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24865375..24865844 | 22..491 | 100 | -> | Plus |
3R | 24866012..24866523 | 492..1005 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:27 Download gff for
BO07719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20691097..20691566 | 22..491 | 100 | -> | Plus |
arm_3R | 20691734..20692245 | 492..1005 | 99 | | Plus |
BO07719.pep Sequence
Translation from 16 to 1021
> BO07719.pep
MLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTLTGGITS
SRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGVRVASTN
SVVFPGNQSPNPALTITGGHQIPAYPPPGFPGQQAPVPYPAAGGSSGGSS
SSGGYQSAGAVSPPGYPVAGAVPAQYPVGVPPQQPVGAGAPGYFPGTGAY
PGYPYPGVYLPQYPAYPQPAQFPAYGVLPGAVAQPGVPGVAGVPGAPGVA
GVPGAAGQAPATSGMNYHRYPAHNPADPSHWDHHFSMNTEYKEDGVHKGP
FGVLNNHNAFGYGSGYGGGYNGAFNSPAYASFLDH
BO07719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ela-PC | 329 | CG7021-PC | 1..329 | 1..329 | 1788 | 100 | Plus |
Ela-PA | 329 | CG7021-PA | 1..329 | 1..329 | 1788 | 100 | Plus |
Ela-PB | 309 | CG7021-PB | 1..309 | 1..329 | 1647 | 93.6 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 336..548 | 65..270 | 160 | 33.5 | Plus |
Sec24CD-PA | 1193 | CG10882-PA | 150..360 | 79..278 | 158 | 31.4 | Plus |