Clone Sequence Records
BO07720.3prime Sequence
973 bp (808 high quality bases) assembled on 2006-01-06
> BO07720.3prime
ATGGTCTAGAAAGCTTGCCTTCCAATTGGCTTTGATGAAGTTAATTAGAC
CGTTCGTGGAACTGTCGTGCGTGGAGACCTCGTTGCAGTGATCCAGCTCC
GGCTCGATGGCCTTGGCCAGCTGCTTGCCCAGCTCCACACCCCATTGGTC
GAACGAGTTGATGTCCCAAATGATGCCCTGAACGAAGATCTTGTGCTCGT
ACAGCGCAATCAACGCGCCTAGGGTGAAAGGTGAAACCTTCTTCACCACA
ATCGAGTTTGTGGGCCGGTTGCCGACGAACACCTTGTGGGGCAACAAGTT
ATCCAGCTCGTTGCCGCACAGGCCAGCCTTGGACAGCTCGGTCCTGGCCT
CGTCGACCGTCTTTCCGGCCATTAAAGCCTCCGTCTGGGCAAGGAAATTC
GATAGCAGAATCTTGTGGTGCTTGCCGCCGGCAATGGGATTGTGTGTCTG
GGCGGGAGCGATGAAATCGCAGGGGATCAGGCGGGTGCCCTGGTGGATGA
GCTGGTAGAAGGCGTGCTGGCCATTGGTGCCAGGCTCGCCCCACACGATC
GGACCAGTGCTGTACTTGACGGGTTTGCCCGACTTGCTGACGAACTTGCC
GTTGCTCTCCATATCGCCCTGCTGGAAGTAGGCGGCGAACCGGTGCAAGT
ACTGATCGTAGGGAAGGAGGGCATGTGTTTCCGCCTTGAAGAAGTTGGAG
TACCAAACGCCTAGCAACGCCAGGATAACAGGAGCATTCTTCTCGAATGG
TGTCGTCTTGAAATGGTTGTCCATGAAGTGAGCTCCATCCAGCAGTTGCT
CAAAGTTCTCAAAGCCAATGGACAGACAGATTGACAGTCCAATGGCCGAC
CACAGGGAGTAGCGACCGCCCACCCAATCCCAAAAACCGAACATGTTGGT
GCTGTCAATGCCGAATTCNGTGACCTTTTCCTTGTTGGTCGACAGGGCAC
AAAATGCTTGGCCACGGACTCAG
BO07720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8251-PA | 1677 | Pgi-RA | 745..1674 | 948..19 | 4631 | 99.8 | Minus |
| CG8251-PB | 1677 | Pgi-RB | 745..1674 | 948..19 | 4631 | 99.8 | Minus |
| CG8251-PC | 1677 | Pgi-RC | 745..1674 | 948..19 | 4631 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 1039..1994 | 973..19 | 4744 | 99.8 | Minus |
| Pgi-RB | 2321 | CG8251-RB | 1083..2038 | 973..19 | 4744 | 99.8 | Minus |
| Pgi-RA | 2460 | CG8251-RA | 1222..2177 | 973..19 | 4744 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8911426..8911954 | 207..735 | 2645 | 100 | Plus |
| 2R | 25286936 | 2R | 8912016..8912255 | 735..973 | 1139 | 99.2 | Plus |
| 2R | 25286936 | 2R | 8911183..8911371 | 19..207 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:01:15 has no hits.
BO07720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:09 Download gff for
BO07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-PC | 719..1677 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:50 Download gff for
BO07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8251-PC | 719..1677 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:19 Download gff for
BO07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 1222..2180 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:27 Download gff for
BO07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 1222..2180 | 15..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:27 Download gff for
BO07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8911180..8911370 | 15..206 | 98 | <- | Plus |
| 2R | 8911426..8911954 | 207..735 | 100 | <- | Plus |
| 2R | 8912017..8912255 | 736..973 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:19 Download gff for
BO07720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4798685..4798875 | 15..206 | 98 | <- | Plus |
| arm_2R | 4798931..4799459 | 207..735 | 100 | <- | Plus |
| arm_2R | 4799522..4799760 | 736..973 | 99 | | Plus |
BO07720.5prime Sequence
873 bp (872 high quality bases) assembled on 2006-01-06
> BO07720.5prime
GAAGTTATCAGTCGACATGGCCGGCCCACTTCCTCCGCTCAACCAGGAGG
CAGCGTTCCAGAAGCTGCAGGAGTACTACGACTCCAAGGGCAAGGACCTG
AACATCAAGGACCTGTTCGTGAAGGATTCCAAGAGATTCTCAAAATACAG
CCTGCGCCTGCACACCCAGAACGATGGCGAGATACTGCTGGACTACTCGA
AGAACCGTATCAATGACGAGGTCTGGGATCTGCTCCTCACCCTGGCCAAG
GTGCGCCGCGTTAACGCCGCGCGGGACGCCATGTTCTCCGGCCAGCACAT
TAACATCACGGAGAACCGCGCCGTCCTCCACACGGCCCTGCGCAACCGCG
GCACGGATCCCGTCCTGGTGGACGACAAGGACGTGATGCCCGATGTGCGC
GCCGAACTGGCCCACATGAAGGAGTTCACCAACATGGTCATCTCCGGCGT
GTGGCGCGGCTGCACCGGCAAACAGATCACCGACGTGGTCAACATCGGCA
TCGGTGGCTCCGATCTGGGCCCGCTGATGGTCACCGAAGCGCTGAAGCCC
TACGGCAAGGGCCTTCACTCCCACTTTGTGTCGAACATCGATGGCACTCA
TCTGGCCGAGGTCCTCAAGAAGGTCAACTACGAGACCACCCTCTTCATTG
TCGCCTCAAAAACTTTCACCACCCAGGAGACCATTACGAACGCCACCTCC
GCCAAGACCTGGCTCCTGGAGCATTCCAAGGAGCCTGAGTCCGTGGCCAA
GCATTTTGTGGCCCTGTCGACCAACAAGGAAAAGGTCACCGAATTCGGCA
TTGACAGCACCAACATGTTCGGTTTTTGGGATTGGGTGGGCGGTCGCTAC
TCCCTGTGGTCGGCCATTGGACT
BO07720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8251-PA | 1677 | Pgi-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG8251-PB | 1677 | Pgi-RB | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG8251-PC | 1677 | Pgi-RC | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 321..1177 | 17..873 | 4285 | 100 | Plus |
| Pgi-RB | 2321 | CG8251-RB | 365..1221 | 17..873 | 4285 | 100 | Plus |
| Pgi-RA | 2460 | CG8251-RA | 504..1360 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8912605..8913190 | 733..148 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 8912117..8912258 | 873..732 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 8913433..8913566 | 150..17 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:45:51 has no hits.
BO07720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:11 Download gff for
BO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-PC | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:51 Download gff for
BO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8251-PC | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:18 Download gff for
BO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 498..1360 | 10..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:05 Download gff for
BO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 498..1360 | 10..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:05 Download gff for
BO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8912117..8912256 | 734..873 | 100 | <- | Minus |
| 2R | 8912605..8913187 | 151..733 | 100 | <- | Minus |
| 2R | 8913433..8913572 | 10..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:18 Download gff for
BO07720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4799622..4799761 | 734..873 | 100 | <- | Minus |
| arm_2R | 4800110..4800692 | 151..733 | 100 | <- | Minus |
| arm_2R | 4800938..4801077 | 10..150 | 97 | | Minus |
BO07720.complete Sequence
1708 bp assembled on 2006-12-18
GenBank Submission: FJ630906
> BO07720.complete
GAAGTTATCAGTCGACATGGCCGGCCCACTTCCTCCGCTCAACCAGGAGG
CAGCGTTCCAGAAGCTGCAGGAGTACTACGACTCCAAGGGCAAGGACCTG
AACATCAAGGACCTGTTCGTGAAGGATTCCAAGAGATTCTCAAAATACAG
CCTGCGCCTGCACACCCAGAACGATGGCGAGATACTGCTGGACTACTCGA
AGAACCGTATCAATGACGAGGTCTGGGATCTGCTCCTCACCCTGGCCAAG
GTGCGCCGCGTTAACGCCGCGCGGGACGCCATGTTCTCCGGCCAGCACAT
TAACATCACGGAGAACCGCGCCGTCCTCCACACGGCCCTGCGCAACCGCG
GCACGGATCCCGTCCTGGTGGACGACAAGGACGTGATGCCCGATGTGCGC
GCCGAACTGGCCCACATGAAGGAGTTCACCAACATGGTCATCTCCGGCGT
GTGGCGCGGCTGCACCGGCAAACAGATCACCGACGTGGTCAACATCGGCA
TCGGTGGCTCCGATCTGGGCCCGCTGATGGTCACCGAAGCGCTGAAGCCC
TACGGCAAGGGCCTTCACTCCCACTTTGTGTCGAACATCGATGGCACTCA
TCTGGCCGAGGTCCTCAAGAAGGTCAACTACGAGACCACCCTCTTCATTG
TCGCCTCAAAAACTTTCACCACCCAGGAGACCATTACGAACGCCACCTCC
GCCAAGACCTGGCTCCTGGAGCATTCCAAGGAGCCTGAGTCCGTGGCCAA
GCATTTTGTGGCCCTGTCGACCAACAAGGAAAAGGTCACCGAATTCGGCA
TTGACAGCACCAACATGTTCGGTTTTTGGGATTGGGTGGGCGGTCGCTAC
TCCCTGTGGTCGGCCATTGGACTGTCAATCTGTCTGTCCATTGGCTTTGA
GAACTTTGAGCAACTGCTGGATGGAGCTCACTTCATGGACAACCATTTCA
AGACGACACCATTCGAGAAGAATGCTCCTGTTATCCTGGCGTTGCTAGGC
GTTTGGTACTCCAACTTCTTCAAGGCGGAAACACATGCCCTCCTTCCCTA
CGATCAGTACTTGCACCGGTTCGCCGCCTACTTCCAGCAGGGCGATATGG
AGAGCAACGGCAAGTTCGTCAGCAAGTCGGGCAAACCCGTCAAGTACAGC
ACTGGTCCGATCGTGTGGGGCGAGCCTGGCACCAATGGCCAGCACGCCTT
CTACCAGCTCATCCACCAGGGCACCCGCCTGATCCCCTGCGATTTCATCG
CTCCCGCCCAGACACACAATCCCATTGCCGGCGGCAAGCACCACAAGATT
CTGCTATCGAATTTCCTTGCCCAGACGGAGGCTTTAATGGCCGGAAAGAC
GGTCGACGAGGCCAGGACCGAGCTGTCCAAGGCTGGCCTGTGCGGCAACG
AGCTGGATAACTTGTTGCCCCACAAGGTGTTCGTCGGCAACCGGCCCACA
AACTCGATTGTGGTGAAGAAGGTTTCACCTTTCACCCTAGGCGCGTTGAT
TGCGCTGTACGAGCACAAGATCTTCGTTCAGGGCATCATTTGGGACATCA
ACTCGTTCGACCAATGGGGTGTGGAGCTGGGCAAGCAGCTGGCCAAGGCC
ATCGAGCCGGAGCTGGATCACTGCAACGAGGTCTCCACGCACGACAGTTC
CACGAACGGTCTAATTAACTTCATCAAAGCCAATTGGAAGGCAAGCTTTC
TAGACCAT
BO07720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 1677 | CG8251-PC | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| Pgi-RB | 1677 | CG8251-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| Pgi-RA | 1677 | CG8251-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 321..1994 | 17..1690 | 8370 | 100 | Plus |
| Pgi-RB | 2321 | CG8251-RB | 365..2038 | 17..1690 | 8370 | 100 | Plus |
| Pgi-RA | 2460 | CG8251-RA | 504..2177 | 17..1690 | 8370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8912605..8913190 | 733..148 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 8911426..8911954 | 1502..974 | 2645 | 100 | Minus |
| 2R | 25286936 | 2R | 8912016..8912258 | 974..732 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 8911183..8911371 | 1690..1502 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 8913433..8913566 | 150..17 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:09:00 has no hits.
BO07720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:18 Download gff for
BO07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 1..1677 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:49 Download gff for
BO07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 418..2091 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:58 Download gff for
BO07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 504..2177 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:18 Download gff for
BO07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 418..2094 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:29 Download gff for
BO07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 504..2177 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:29 Download gff for
BO07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8911181..8911370 | 1503..1692 | 98 | <- | Minus |
| 2R | 8911426..8911954 | 974..1502 | 100 | <- | Minus |
| 2R | 8912017..8912256 | 734..973 | 100 | <- | Minus |
| 2R | 8912605..8913187 | 151..733 | 100 | <- | Minus |
| 2R | 8913433..8913566 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:58 Download gff for
BO07720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4799522..4799761 | 734..973 | 100 | <- | Minus |
| arm_2R | 4798686..4798875 | 1503..1692 | 98 | <- | Minus |
| arm_2R | 4798931..4799459 | 974..1502 | 100 | <- | Minus |
| arm_2R | 4800110..4800692 | 151..733 | 100 | <- | Minus |
| arm_2R | 4800938..4801071 | 17..150 | 100 | | Minus |
BO07720.pep Sequence
Translation from 16 to 1708
> BO07720.pep
MAGPLPPLNQEAAFQKLQEYYDSKGKDLNIKDLFVKDSKRFSKYSLRLHT
QNDGEILLDYSKNRINDEVWDLLLTLAKVRRVNAARDAMFSGQHINITEN
RAVLHTALRNRGTDPVLVDDKDVMPDVRAELAHMKEFTNMVISGVWRGCT
GKQITDVVNIGIGGSDLGPLMVTEALKPYGKGLHSHFVSNIDGTHLAEVL
KKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKHFVAL
STNKEKVTEFGIDSTNMFGFWDWVGGRYSLWSAIGLSICLSIGFENFEQL
LDGAHFMDNHFKTTPFEKNAPVILALLGVWYSNFFKAETHALLPYDQYLH
RFAAYFQQGDMESNGKFVSKSGKPVKYSTGPIVWGEPGTNGQHAFYQLIH
QGTRLIPCDFIAPAQTHNPIAGGKHHKILLSNFLAQTEALMAGKTVDEAR
TELSKAGLCGNELDNLLPHKVFVGNRPTNSIVVKKVSPFTLGALIALYEH
KIFVQGIIWDINSFDQWGVELGKQLAKAIEPELDHCNEVSTHDSSTNGLI
NFIKANWKASFLDH
BO07720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-PC | 558 | CG8251-PC | 1..558 | 1..558 | 2950 | 100 | Plus |
| Pgi-PB | 558 | CG8251-PB | 1..558 | 1..558 | 2950 | 100 | Plus |
| Pgi-PA | 558 | CG8251-PA | 1..558 | 1..558 | 2950 | 100 | Plus |
