Clone Sequence Records
BO07723.3prime Sequence
990 bp (833 high quality bases) assembled on 2006-01-06
> BO07723.3prime
ATGGTCTAGAAAGCTTGCGCCCTTGAGGCTCGTCATGCCCGCACGCATCA
CCTCGTCGACGAGAAGCAGGTTGCTGGCAATGATCGAACAGGAGTTGAGG
ATCTGCTTCTTAACGATGTAGTTGTCGTAGACGCCCAGATCCACGGGCTT
CATGGGCTCCCCGGTGGCCAGATCCAGGCCGACCAGTTCGGGACTCAGGC
GATCCTCAACAGTCAGCTTGACGATTGTGTCCTGGGCATCGTAGCCGCTG
TTCACGGCCAGCGTCTTGGGAATGACCAGCAGGGCATCGGCAAAGGCCTG
CACTGCCAGGCGGGACTTGCCCTTGATGGTGTCCTTGAAGGCGACCAGCT
CGTTGTACGCGCGCACCTCGAATGCTCCAGCTCCGGGCACCAGAGCCTTA
TCGGCAATGGTGTTGTTGATGGCACGCAGACCGTCCCTGATGGCGTCCTT
GATCTGGGTGATCGTGTGCTTGTTGGGACCCTTGATCAGGATCGTGACGG
ACAGCGGGTTCTTGCAGTCCTCAACGAAAGTGTACTTGTTCTCGCCCAGA
ACATGCTCGTACACCACACCGGCGTATCCCAAGTGCTCCTCCTGCAGATC
GTCAAAGGAGTTCATTGCAGTGCCACCGCAGGCCAAAGACAGACGCTCCA
TGTTGCGGCGCTTGGCGCGACGCAAGGCCAGGATGCCCTCCTTGGCCAGG
GCGTCCAGCGAGATGGGGTCGATGCCCTTCTGGTTGATCAGGACGAAGGT
TTTGTCGGTGCCATCGCACACGGAGCGCTTCAATTCGATCACCTTCTTCA
CACGCTGGTCGATGAATTCGCGCTCGGCGCGCACAAAGGCCTCACGCTCC
TCGGCGGTCTTGTAGAAGAAGCCAGAGTTGACCTCGGCCCTCTCGTACTC
CAGCGAGACATTGGCCGTAAGGATGTAGGCATTCTCCAAACGCTTCGGCA
TGTCCCGGGTGGCGAGCACCATGGTCCATGACTAGTCCCC
BO07723.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8231-PA | 1602 | l(1)G0022-RA | 663..1599 | 955..19 | 4660 | 99.8 | Minus |
CG8231-PA | 1602 | l(1)G0022-RA | 631..664 | 988..955 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tcp-1zeta-RA | 1924 | CG8231-RA | 754..1722 | 988..19 | 4810 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15747801..15748769 | 988..19 | 4785 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:59 has no hits.
BO07723.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:15 Download gff for
BO07723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8231-PA | 629..1602 | 18..990 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:58 Download gff for
BO07723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8231-PA | 629..1602 | 18..990 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:28 Download gff for
BO07723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 752..1722 | 19..990 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:36 Download gff for
BO07723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 752..1722 | 19..990 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:36 Download gff for
BO07723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15747799..15748769 | 19..990 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:28 Download gff for
BO07723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15641832..15642802 | 19..990 | 99 | | Minus |
BO07723.5prime Sequence
857 bp (741 high quality bases) assembled on 2006-01-06
> BO07723.5prime
GAAGTTATCAGTCGACATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCG
AGTTTGCCCGCGCCGCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAG
GGACTGCAGGATGTGATGCGCACCAATTTGGGACCCAAGGGCACCGTTAA
GATGTTGGTTTCTGGCGCCGGCGACATCAAGATCACCAAGGATGGCAATG
TCCTGCTGCACGAAATGCAGATCCAACATCCGACTGCCTCTATGATTGCC
AGGGCCAGCACGGCCCAGGATGATTCCACCGGCGATGGAACCACCACCAC
TGTGATGCTTATTGGCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCG
AGGGACTGCATCCTCGCATCATGACCGATGGATTCGAGAAGGCACGCGAC
AAGGCATTGGAGGTGCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAA
GAAGAACCTGGTGGAGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATC
CCGCCCTTGCCGATCTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACC
ATTGCCAGTGCCGATAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCT
GATGGAGATGCAGCACAAATCCGATACCGATACACAGCTGGTGCGTGGAC
TAGTCATGGACCATGGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAG
AATGCCTACATCCTTACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGA
GGTCAACTCTGGCTTCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTG
TGCGCGCCGAGCGCGAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAA
TTGAAGC
BO07723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8231-PA | 1602 | l(1)G0022-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tcp-1zeta-RA | 1924 | CG8231-RA | 124..964 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15747308..15748011 | 154..857 | 3520 | 100 | Plus |
X | 23542271 | X | 15746771..15746909 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:35:10 has no hits.
BO07723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:16 Download gff for
BO07723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8231-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:00 Download gff for
BO07723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8231-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:43 Download gff for
BO07723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 120..964 | 13..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:50 Download gff for
BO07723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 120..964 | 13..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:50 Download gff for
BO07723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15746767..15746907 | 13..153 | 98 | -> | Plus |
X | 15747308..15748011 | 154..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:43 Download gff for
BO07723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15640800..15640940 | 13..153 | 98 | -> | Plus |
arm_X | 15641341..15642044 | 154..857 | 100 | | Plus |
BO07723.complete Sequence
1633 bp (1633 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630908
> BO07723.complete
GAAGTTATCAGTCGACATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCG
AGTTTGCCCGCGCCGCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAG
GGACTGCAGGATGTGATGCGCACCAATTTGGGACCCAAGGGCACCGTTAA
GATGTTGGTTTCTGGCGCCGGCGACATCAAGATCACCAAGGATGGCAATG
TCCTGCTGCACGAAATGCAGATCCAACATCCGACTGCCTCTATGATTGCC
AGGGCCAGCACGGCCCAGGATGATTCCACCGGCGATGGAACCACCACCAC
TGTGATGCTTATTGGCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCG
AGGGACTGCATCCTCGCATCATGACCGATGGATTCGAGAAGGCACGCGAC
AAGGCATTGGAGGTGCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAA
GAAGAACCTGGTGGAGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATC
CCGCCCTTGCCGATCTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACC
ATTGCCAGTGCCGATAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCT
GATGGAGATGCAGCACAAATCCGATACCGATACACAGCTGGTGCGTGGAC
TAGTCATGGACCATGGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAG
AATGCCTACATCCTTACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGA
GGTCAACTCTGGCTTCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTG
TGCGCGCCGAGCGCGAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAA
TTGAAGCGCTCCGTGTGCGATGGCACCGACAAAACCTTCGTCCTGATCAA
CCAGAAGGGCATCGACCCCATCTCGCTGGACGCCCTGGCCAAGGAGGGCA
TCCTGGCCTTGCGTCGCGCCAAGCGCCGCAACATGGAGCGTCTGTCTTTG
GCCTGCGGTGGCACTGCAATGAACTCCTTTGACGATCTGCAGGAGGAGCA
CTTGGGATACGCCGGTGTGGTGTACGAGCATGTTCTGGGCGAGAACAAGT
ACACTTTCGTTGAGGACTGCAAGAACCCGCTGTCCGTCACGATCCTGATC
AAGGGTCCCAACAAGCACACGATCACCCAGATCAAGGACGCCATCAGGGA
CGGTCTGCGTGCCATCAACAACACCATTGCCGATAAGGCTCTGGTGCCCG
GAGCTGGAGCATTCGAGGTGCGCGCGTACAACGAGCTGGTCGCCTTCAAG
GACACCATCAAGGGCAAGTCCCGCCTGGCAGTGCAGGCCTTTGCCGATGC
CCTGCTGGTCATTCCCAAGACGCTGGCCGTGAACAGCGGCTACGATGCCC
AGGACACAATCGTCAAGCTGACTGTTGAGGATCGCCTGAGTCCCGAACTG
GTCGGCCTGGATCTGGCCACCGGGGAGCCCATGAAGCCCGTGGATCTGGG
CGTCTACGACAACTACATCGTTAAGAAGCAGATCCTCAACTCCTGTTCGA
TCATTGCCAGCAACCTGCTTCTCGTCGACGAGGTGATGCGTGCGGGCATG
ACGAGCCTCAAGGGCGCAAGCTTTCTAGACCAT
BO07723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tcp-1zeta-RA | 1602 | CG8231-PA | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tcp-1zeta-RA | 1924 | CG8231-RA | 124..1722 | 17..1615 | 7995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15747308..15748769 | 154..1615 | 7310 | 100 | Plus |
X | 23542271 | X | 15746771..15746909 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:03:41 has no hits.
BO07723.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:21 Download gff for
BO07723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 1..1602 | 17..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:06 Download gff for
BO07723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 142..1744 | 13..1615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:01 Download gff for
BO07723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 124..1722 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:21 Download gff for
BO07723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 142..1744 | 13..1615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:32 Download gff for
BO07723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tcp-1zeta-RA | 124..1722 | 17..1617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:32 Download gff for
BO07723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15746771..15746907 | 17..153 | 100 | -> | Plus |
X | 15747308..15748769 | 154..1617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:01 Download gff for
BO07723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15640804..15640940 | 17..153 | 100 | -> | Plus |
arm_X | 15641341..15642802 | 154..1617 | 99 | | Plus |
BO07723.pep Sequence
Translation from 16 to 1633
> BO07723.pep
MASISLLNPKAEFARAAQALAINISAAKGLQDVMRTNLGPKGTVKMLVSG
AGDIKITKDGNVLLHEMQIQHPTASMIARASTAQDDSTGDGTTTTVMLIG
ELLKQADIYLSEGLHPRIMTDGFEKARDKALEVLDQVKVPVEINKKNLVE
VANTSLKTKVHPALADLLTDVCVNAVLTIASADKTKPVDLHMVELMEMQH
KSDTDTQLVRGLVMDHGARHPDMPKRLENAYILTANVSLEYEKAEVNSGF
FYKTAEEREAFVRAEREFIDQRVKKVIELKRSVCDGTDKTFVLINQKGID
PISLDALAKEGILALRRAKRRNMERLSLACGGTAMNSFDDLQEEHLGYAG
VVYEHVLGENKYTFVEDCKNPLSVTILIKGPNKHTITQIKDAIRDGLRAI
NNTIADKALVPGAGAFEVRAYNELVAFKDTIKGKSRLAVQAFADALLVIP
KTLAVNSGYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNY
IVKKQILNSCSIIASNLLLVDEVMRAGMTSLKGASFLDH
BO07723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tcp-1zeta-PA | 533 | CG8231-PA | 1..533 | 1..533 | 2665 | 100 | Plus |
CG5525-PA | 533 | CG5525-PA | 30..529 | 23..524 | 591 | 29.5 | Plus |
Cct5-PA | 542 | CG8439-PA | 34..534 | 19..523 | 587 | 30.6 | Plus |
Cct5-PB | 512 | CG8439-PB | 8..504 | 23..523 | 583 | 30.6 | Plus |
Cctgamma-PD | 544 | CG8977-PD | 14..522 | 8..524 | 557 | 27.8 | Plus |