Clone BO07723 Report

Search the DGRC for BO07723

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptTcp-1zeta-RA
Protein status:BO07723.pep: validated full length
Sequenced Size:1633

Clone Sequence Records

BO07723.3prime Sequence

990 bp (833 high quality bases) assembled on 2006-01-06

> BO07723.3prime
ATGGTCTAGAAAGCTTGCGCCCTTGAGGCTCGTCATGCCCGCACGCATCA
CCTCGTCGACGAGAAGCAGGTTGCTGGCAATGATCGAACAGGAGTTGAGG
ATCTGCTTCTTAACGATGTAGTTGTCGTAGACGCCCAGATCCACGGGCTT
CATGGGCTCCCCGGTGGCCAGATCCAGGCCGACCAGTTCGGGACTCAGGC
GATCCTCAACAGTCAGCTTGACGATTGTGTCCTGGGCATCGTAGCCGCTG
TTCACGGCCAGCGTCTTGGGAATGACCAGCAGGGCATCGGCAAAGGCCTG
CACTGCCAGGCGGGACTTGCCCTTGATGGTGTCCTTGAAGGCGACCAGCT
CGTTGTACGCGCGCACCTCGAATGCTCCAGCTCCGGGCACCAGAGCCTTA
TCGGCAATGGTGTTGTTGATGGCACGCAGACCGTCCCTGATGGCGTCCTT
GATCTGGGTGATCGTGTGCTTGTTGGGACCCTTGATCAGGATCGTGACGG
ACAGCGGGTTCTTGCAGTCCTCAACGAAAGTGTACTTGTTCTCGCCCAGA
ACATGCTCGTACACCACACCGGCGTATCCCAAGTGCTCCTCCTGCAGATC
GTCAAAGGAGTTCATTGCAGTGCCACCGCAGGCCAAAGACAGACGCTCCA
TGTTGCGGCGCTTGGCGCGACGCAAGGCCAGGATGCCCTCCTTGGCCAGG
GCGTCCAGCGAGATGGGGTCGATGCCCTTCTGGTTGATCAGGACGAAGGT
TTTGTCGGTGCCATCGCACACGGAGCGCTTCAATTCGATCACCTTCTTCA
CACGCTGGTCGATGAATTCGCGCTCGGCGCGCACAAAGGCCTCACGCTCC
TCGGCGGTCTTGTAGAAGAAGCCAGAGTTGACCTCGGCCCTCTCGTACTC
CAGCGAGACATTGGCCGTAAGGATGTAGGCATTCTCCAAACGCTTCGGCA
TGTCCCGGGTGGCGAGCACCATGGTCCATGACTAGTCCCC

BO07723.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8231-PA 1602 l(1)G0022-RA 663..1599 955..19 4660 99.8 Minus
CG8231-PA 1602 l(1)G0022-RA 631..664 988..955 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tcp-1zeta-RA 1924 CG8231-RA 754..1722 988..19 4810 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15747801..15748769 988..19 4785 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 17:35:59 has no hits.

BO07723.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:15 Download gff for BO07723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8231-PA 629..1602 18..990 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:12:58 Download gff for BO07723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8231-PA 629..1602 18..990 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:28 Download gff for BO07723.3prime
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 752..1722 19..990 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:36 Download gff for BO07723.3prime
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 752..1722 19..990 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:36 Download gff for BO07723.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15747799..15748769 19..990 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:28 Download gff for BO07723.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15641832..15642802 19..990 99   Minus

BO07723.5prime Sequence

857 bp (741 high quality bases) assembled on 2006-01-06

> BO07723.5prime
GAAGTTATCAGTCGACATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCG
AGTTTGCCCGCGCCGCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAG
GGACTGCAGGATGTGATGCGCACCAATTTGGGACCCAAGGGCACCGTTAA
GATGTTGGTTTCTGGCGCCGGCGACATCAAGATCACCAAGGATGGCAATG
TCCTGCTGCACGAAATGCAGATCCAACATCCGACTGCCTCTATGATTGCC
AGGGCCAGCACGGCCCAGGATGATTCCACCGGCGATGGAACCACCACCAC
TGTGATGCTTATTGGCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCG
AGGGACTGCATCCTCGCATCATGACCGATGGATTCGAGAAGGCACGCGAC
AAGGCATTGGAGGTGCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAA
GAAGAACCTGGTGGAGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATC
CCGCCCTTGCCGATCTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACC
ATTGCCAGTGCCGATAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCT
GATGGAGATGCAGCACAAATCCGATACCGATACACAGCTGGTGCGTGGAC
TAGTCATGGACCATGGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAG
AATGCCTACATCCTTACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGA
GGTCAACTCTGGCTTCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTG
TGCGCGCCGAGCGCGAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAA
TTGAAGC

BO07723.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8231-PA 1602 l(1)G0022-RA 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tcp-1zeta-RA 1924 CG8231-RA 124..964 17..857 4205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15747308..15748011 154..857 3520 100 Plus
X 23542271 X 15746771..15746909 17..155 695 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:35:10 has no hits.

BO07723.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:16 Download gff for BO07723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8231-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:00 Download gff for BO07723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8231-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:43 Download gff for BO07723.5prime
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 120..964 13..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:50 Download gff for BO07723.5prime
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 120..964 13..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:50 Download gff for BO07723.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15746767..15746907 13..153 98 -> Plus
X 15747308..15748011 154..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:43 Download gff for BO07723.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15640800..15640940 13..153 98 -> Plus
arm_X 15641341..15642044 154..857 100   Plus

BO07723.complete Sequence

1633 bp (1633 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630908

> BO07723.complete
GAAGTTATCAGTCGACATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCG
AGTTTGCCCGCGCCGCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAG
GGACTGCAGGATGTGATGCGCACCAATTTGGGACCCAAGGGCACCGTTAA
GATGTTGGTTTCTGGCGCCGGCGACATCAAGATCACCAAGGATGGCAATG
TCCTGCTGCACGAAATGCAGATCCAACATCCGACTGCCTCTATGATTGCC
AGGGCCAGCACGGCCCAGGATGATTCCACCGGCGATGGAACCACCACCAC
TGTGATGCTTATTGGCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCG
AGGGACTGCATCCTCGCATCATGACCGATGGATTCGAGAAGGCACGCGAC
AAGGCATTGGAGGTGCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAA
GAAGAACCTGGTGGAGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATC
CCGCCCTTGCCGATCTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACC
ATTGCCAGTGCCGATAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCT
GATGGAGATGCAGCACAAATCCGATACCGATACACAGCTGGTGCGTGGAC
TAGTCATGGACCATGGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAG
AATGCCTACATCCTTACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGA
GGTCAACTCTGGCTTCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTG
TGCGCGCCGAGCGCGAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAA
TTGAAGCGCTCCGTGTGCGATGGCACCGACAAAACCTTCGTCCTGATCAA
CCAGAAGGGCATCGACCCCATCTCGCTGGACGCCCTGGCCAAGGAGGGCA
TCCTGGCCTTGCGTCGCGCCAAGCGCCGCAACATGGAGCGTCTGTCTTTG
GCCTGCGGTGGCACTGCAATGAACTCCTTTGACGATCTGCAGGAGGAGCA
CTTGGGATACGCCGGTGTGGTGTACGAGCATGTTCTGGGCGAGAACAAGT
ACACTTTCGTTGAGGACTGCAAGAACCCGCTGTCCGTCACGATCCTGATC
AAGGGTCCCAACAAGCACACGATCACCCAGATCAAGGACGCCATCAGGGA
CGGTCTGCGTGCCATCAACAACACCATTGCCGATAAGGCTCTGGTGCCCG
GAGCTGGAGCATTCGAGGTGCGCGCGTACAACGAGCTGGTCGCCTTCAAG
GACACCATCAAGGGCAAGTCCCGCCTGGCAGTGCAGGCCTTTGCCGATGC
CCTGCTGGTCATTCCCAAGACGCTGGCCGTGAACAGCGGCTACGATGCCC
AGGACACAATCGTCAAGCTGACTGTTGAGGATCGCCTGAGTCCCGAACTG
GTCGGCCTGGATCTGGCCACCGGGGAGCCCATGAAGCCCGTGGATCTGGG
CGTCTACGACAACTACATCGTTAAGAAGCAGATCCTCAACTCCTGTTCGA
TCATTGCCAGCAACCTGCTTCTCGTCGACGAGGTGATGCGTGCGGGCATG
ACGAGCCTCAAGGGCGCAAGCTTTCTAGACCAT

BO07723.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tcp-1zeta-RA 1602 CG8231-PA 1..1599 17..1615 7995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tcp-1zeta-RA 1924 CG8231-RA 124..1722 17..1615 7995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15747308..15748769 154..1615 7310 100 Plus
X 23542271 X 15746771..15746909 17..155 695 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:03:41 has no hits.

BO07723.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:21 Download gff for BO07723.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 1..1602 17..1616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:06 Download gff for BO07723.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 142..1744 13..1615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:01 Download gff for BO07723.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 124..1722 17..1617 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:21 Download gff for BO07723.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 142..1744 13..1615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:32 Download gff for BO07723.complete
Subject Subject Range Query Range Percent Splice Strand
Tcp-1zeta-RA 124..1722 17..1617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:32 Download gff for BO07723.complete
Subject Subject Range Query Range Percent Splice Strand
X 15746771..15746907 17..153 100 -> Plus
X 15747308..15748769 154..1617 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:01 Download gff for BO07723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15640804..15640940 17..153 100 -> Plus
arm_X 15641341..15642802 154..1617 99   Plus

BO07723.pep Sequence

Translation from 16 to 1633

> BO07723.pep
MASISLLNPKAEFARAAQALAINISAAKGLQDVMRTNLGPKGTVKMLVSG
AGDIKITKDGNVLLHEMQIQHPTASMIARASTAQDDSTGDGTTTTVMLIG
ELLKQADIYLSEGLHPRIMTDGFEKARDKALEVLDQVKVPVEINKKNLVE
VANTSLKTKVHPALADLLTDVCVNAVLTIASADKTKPVDLHMVELMEMQH
KSDTDTQLVRGLVMDHGARHPDMPKRLENAYILTANVSLEYEKAEVNSGF
FYKTAEEREAFVRAEREFIDQRVKKVIELKRSVCDGTDKTFVLINQKGID
PISLDALAKEGILALRRAKRRNMERLSLACGGTAMNSFDDLQEEHLGYAG
VVYEHVLGENKYTFVEDCKNPLSVTILIKGPNKHTITQIKDAIRDGLRAI
NNTIADKALVPGAGAFEVRAYNELVAFKDTIKGKSRLAVQAFADALLVIP
KTLAVNSGYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNY
IVKKQILNSCSIIASNLLLVDEVMRAGMTSLKGASFLDH

BO07723.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tcp-1zeta-PA 533 CG8231-PA 1..533 1..533 2665 100 Plus
CG5525-PA 533 CG5525-PA 30..529 23..524 591 29.5 Plus
Cct5-PA 542 CG8439-PA 34..534 19..523 587 30.6 Plus
Cct5-PB 512 CG8439-PB 8..504 23..523 583 30.6 Plus
Cctgamma-PD 544 CG8977-PD 14..522 8..524 557 27.8 Plus