Clone BO07729 Report

Search the DGRC for BO07729

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptOrc2-RA
Protein status:BO07729.pep: validated full length
Sequenced Size:1888

Clone Sequence Records

BO07729.3prime Sequence

924 bp (760 high quality bases) assembled on 2006-01-06

> BO07729.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTCCTGCTCCTCGAGAAACTGCTGCA
GCAGTGCGCCATCAATGGGAATGGTTAGCTGTTCGGAGCCATCAACGCTC
CGTTTCGATTTGACCAGCTTGTGGTCGAGGAACTCGGTGAGCTGGGCACG
CAGTGCCAGATCTGAGCTGACCAAAAATGCTTCGCGACAACTCGAATAGA
GATCCCTGAACGGCATGCCCTGGTATGTGGCATTGCCCTTGTTCTTCAAT
TGATACTTAACAATCAGCATGTAAATGCCACGCGAATTGGTCGTTAGCGA
TGAGAAGACACTGCGCATCGAGGAGAGGGCCAATTCGCCGGAATTCTGCA
CCAGCAGCGAGTTCTCGAACGCAGTTTCGTTCGTATATGGCAGCATTGTT
GTGCAGTCCCACCACGAGAAGTTGAAGCTGCACAGCTTTCCCTGGTCCCA
CAAAAGTGGGGTATTTATGTGATCAATGGAGGCCAGTAGATGAATGTTCG
GTATGCGCGCCAGGCGCGAAAGAATCGCCTGTGCCTTCACATTGCGAAGC
ATGGCTCCATCCAGATTATGGACGATTAAGAACAAATGTGTTTCCGGTAT
CAGTGCGAACTCCTCCTCGATCATATCCACTGCTTCATGTGGATTAGCCG
GACTAATGCCCGCATCTAATATGTCGCTTGTGATGCTATCCAGCATATCC
TTGATGGTCAGACTGGGAAAGAAGCCATTCACCACCAATACCGTTTGCTT
ATGCAAAACTTCCCGATGGAATGACTGCAGCAGCTGGTGCTTGGAGCCCA
ATCCATATAGAAGTATATTGAAGCCTTCGTTCAGAATACACATCCACTTG
GGAAAGTACGATCGATACTCCTCCATAATGGCATTAATAGAACCCTCATG
CTCCGCCGATGTCTTGATTCCGAC

BO07729.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3041-PA 1857 Orc2-RA 954..1854 919..19 4480 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-RA 1995 CG3041-RA 1013..1919 924..19 4495 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13966029..13966493 919..455 2325 100 Minus
3R 32079331 3R 13966566..13966999 452..19 2170 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:59:03 has no hits.

BO07729.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:26 Download gff for BO07729.3prime
Subject Subject Range Query Range Percent Splice Strand
Orc2-PA 948..1857 18..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:14 Download gff for BO07729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3041-PA 948..1857 18..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:31 Download gff for BO07729.3prime
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1013..1924 13..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:32 Download gff for BO07729.3prime
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1013..1924 13..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:32 Download gff for BO07729.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13966023..13966495 453..924 99 -> Minus
3R 13966566..13967004 13..452 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:31 Download gff for BO07729.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9791745..9792217 453..924 99 -> Minus
arm_3R 9792288..9792726 13..452 99   Minus

BO07729.5prime Sequence

905 bp (850 high quality bases) assembled on 2006-01-06

> BO07729.5prime
GAAGTTATCAGTCGACATGAGTGCCAGCAACAAAGGCGGTTACAAGACGC
CGCGGAAGGAGAACCTCATGTCCATTGAGAACCTCACCAATTCGGAGGAG
GAATCCGAGGACTTGAACACGGCAATGGTTGGGAATGCAGTGGAATCTCA
GCCCAAGGTCACCAGTCGGCGTTCCACCCGACGTCCAAGTCCCACCAAGA
AATACCAGGCGTACCAGAAGGAAAGCAATGGAAAAGGCCAGGAAGAGCGA
ATTGTTGTGAACTATGTGGAAATGTCCGATGAACGGAGCAGCGATGCGGA
GGATCAGGAAGAAGAAGAAAGCATCGAGGAGTCGGAAAATGCTGCCCGTC
CCGCTGCCAAGGATCTGCATCTCATCCAATCCGAGTACAATGTGGCCGGC
ACCAGCATGTTTGGCTTCAATACGCCCAAGAAACGCGATGCCATGGCACT
GGCCGCCCTAAATGCCACGCCCTGCACGCCCAAGACCCCAAAAACGCCGC
GTTTGGGTGTCAAGACGCCGGATACGAAGCGCAAGAAGTCCATGGATCAG
CCAAAGACTCCCGCCCATGTGCGCACCCGCGTCAAGAAGCAGATTGCCAA
AATAGTGGCCGACTCAGATGAGGATTTTTCTGGAGATGAAAGCGATTTCC
GGCCCAGTGACGAGGAATCCTCCTCCAGCAGCAGTAGCAGCGATGCTGGC
AACTCCTCTGACAACGACGCCGCCGATGATGAGCCCAAAACGCCCAGTAG
AGCCCGCCGTGCCATTGTAGTCCCCGTTCTGCCGAAAACTCCATCGGCAG
CCCGCCTGCGACAATCGGCGAGGGCGAAAAAATCGAATGAGTTTGTGCCC
GAGAGCGATGGTTACTTTCACTCGCATGCCAGCAGCAAGATCCTCACTTC
NGATC

BO07729.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3041-PA 1857 Orc2-RA 1..889 17..905 4426 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-RA 1995 CG3041-RA 65..954 16..905 4439 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13965007..13965581 16..590 2875 100 Plus
3R 32079331 3R 13965650..13965964 591..905 1564 99.7 Plus
Blast to na_te.dros performed on 2015-02-11 17:36:27 has no hits.

BO07729.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:27 Download gff for BO07729.5prime
Subject Subject Range Query Range Percent Splice Strand
Orc2-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:15 Download gff for BO07729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3041-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:31 Download gff for BO07729.5prime
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 60..954 10..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:27 Download gff for BO07729.5prime
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 60..954 10..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:27 Download gff for BO07729.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13965650..13965964 591..905 99   Plus
3R 13965002..13965581 10..590 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:31 Download gff for BO07729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9790724..9791303 10..590 99 -> Plus
arm_3R 9791372..9791686 591..905 99   Plus

BO07729.complete Sequence

1888 bp (1888 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630909

> BO07729.complete
GAAGTTATCAGTCGACATGAGTGCCAGCAACAAAGGCGGTTACAAGACGC
CGCGGAAGGAGAACCTCATGTCCATTGAGAACCTCACCAATTCGGAGGAG
GAATCCGAGGACTTGAACACGGCAATGGTTGGGAATGCAGTGGAATCTCA
GCCCAAGGTCACCAGTCGGCGTTCCACCCGACGTCCAAGTCCCACCAAGA
AATACCAGGCGTACCAGAAGGAAAGCAATGGAAAAGGCCAGGAAGAGCGA
ATTGTTGTGAACTATGTGGAAATGTCCGATGAACGGAGCAGCGATGCGGA
GGATCAGGAAGAAGAAGAAAGCATCGAGGAGTCGGAAAATGCTGCCCGTC
CCGCTGCCAAGGATCTGCATCTCATCCAATCCGAGTACAATGTGGCCGGC
ACCAGCATGTTTGGCTTCAATACGCCCAAGAAACGCGATGCCATGGCACT
GGCCGCCCTAAATGCCACGCCCTGCACGCCCAAGACCCCAAAAACGCCGC
GTTTGGGTGTCAAGACGCCGGATACGAAGCGCAAGAAGTCCATGGATCAG
CCAAAGACTCCCGCCCATGTGCGCACCCGCGTCAAGAAGCAGATTGCCAA
AATAGTGGCCGACTCAGATGAGGATTTTTCTGGAGATGAAAGCGATTTCC
GGCCCAGTGACGAGGAATCCTCCTCCAGCAGCAGTAGCAGCGATGCTGGC
AACTCCTCTGACAACGACGCCGCCGATGATGAGCCCAAAACGCCCAGTAG
AGCCCGCCGTGCCATTGTAGTCCCCGTTCTGCCGAAAACTCCATCGGCAG
CCCGCCTGCGACAATCGGCGAGGGCGAAAAAATCGAATGAGTTTGTGCCC
GAGAGCGATGGTTACTTTCACTCGCATGCCAGCAGCAAGATCCTCACTTC
GGATCACACCTTGGATCGCCTAAAGAATCCTCGCCTGGCCGCCGATCGTG
TTTTCAGTTTGCTGTCGGAAATCAAGACATCGGCGGAGCATGAGGGTTCT
ATTAATGCCATTATGGAGGAGTATCGATCGTACTTTCCCAAGTGGATGTG
TATTCTGAACGAAGGCTTCAATATACTTCTATATGGATTGGGCTCCAAGC
ACCAGCTGCTGCAGTCATTCCATCGGGAAGTTTTGCATAAGCAAACGGTA
TTGGTGGTGAATGGCTTCTTTCCCAGTCTGACCATCAAGGATATGCTGGA
TAGCATCACAAGCGACATATTAGATGCGGGCATTAGTCCGGCTAATCCAC
ATGAAGCAGTGGATATGATCGAGGAGGAGTTCGCACTGATACCGGAAACA
CATTTGTTCTTAATCGTCCATAATCTGGATGGAGCCATGCTTCGCAATGT
GAAGGCACAGGCGATTCTTTCGCGCCTGGCGCGCATACCGAACATTCATC
TACTGGCCTCCATTGATCACATAAATACCCCACTTTTGTGGGACCAGGGA
AAGCTGTGCAGCTTCAACTTCTCGTGGTGGGACTGCACAACAATGCTGCC
ATATACGAACGAAACTGCGTTCGAGAACTCGCTGCTGGTGCAGAATTCCG
GCGAATTGGCCCTCTCCTCGATGCGCAGTGTCTTCTCATCGCTAACGACC
AATTCGCGTGGCATTTACATGCTGATTGTTAAGTATCAATTGAAGAACAA
GGGCAATGCCACATACCAGGGCATGCCGTTCAGGGATCTCTATTCGAGTT
GTCGCGAAGCATTTTTGGTCAGCTCAGATCTGGCACTGCGTGCCCAGCTC
ACCGAGTTCCTCGACCACAAGCTGGTCAAATCGAAACGGAGCGTTGATGG
CTCCGAACAGCTAACCATTCCCATTGATGGCGCACTGCTGCAGCAGTTTC
TCGAGGAGCAGGAGAAGAAAGCAAGCTTTCTAGACCAT

BO07729.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-RA 1857 CG3041-PA 1..1854 17..1870 9255 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-RA 1995 CG3041-RA 65..1919 16..1870 9260 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13965650..13966493 591..1434 4220 100 Plus
3R 32079331 3R 13965007..13965581 16..590 2875 100 Plus
3R 32079331 3R 13966566..13966999 1437..1870 2170 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:29:50 has no hits.

BO07729.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:22 Download gff for BO07729.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 1..1857 17..1871 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:07 Download gff for BO07729.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 28..1892 10..1876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:32 Download gff for BO07729.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 66..1919 17..1872 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:22 Download gff for BO07729.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 28..1892 10..1876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:53 Download gff for BO07729.complete
Subject Subject Range Query Range Percent Splice Strand
Orc2-RA 66..1919 17..1872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:53 Download gff for BO07729.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13966566..13966999 1437..1872 99   Plus
3R 13965008..13965581 17..590 100 -> Plus
3R 13965650..13966495 591..1436 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:32 Download gff for BO07729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9790730..9791303 17..590 100 -> Plus
arm_3R 9791372..9792217 591..1436 99 -> Plus
arm_3R 9792288..9792721 1437..1872 99   Plus

BO07729.pep Sequence

Translation from 16 to 1888

> BO07729.pep
MSASNKGGYKTPRKENLMSIENLTNSEEESEDLNTAMVGNAVESQPKVTS
RRSTRRPSPTKKYQAYQKESNGKGQEERIVVNYVEMSDERSSDAEDQEEE
ESIEESENAARPAAKDLHLIQSEYNVAGTSMFGFNTPKKRDAMALAALNA
TPCTPKTPKTPRLGVKTPDTKRKKSMDQPKTPAHVRTRVKKQIAKIVADS
DEDFSGDESDFRPSDEESSSSSSSSDAGNSSDNDAADDEPKTPSRARRAI
VVPVLPKTPSAARLRQSARAKKSNEFVPESDGYFHSHASSKILTSDHTLD
RLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWMCILNEG
FNILLYGLGSKHQLLQSFHREVLHKQTVLVVNGFFPSLTIKDMLDSITSD
ILDAGISPANPHEAVDMIEEEFALIPETHLFLIVHNLDGAMLRNVKAQAI
LSRLARIPNIHLLASIDHINTPLLWDQGKLCSFNFSWWDCTTMLPYTNET
AFENSLLVQNSGELALSSMRSVFSSLTTNSRGIYMLIVKYQLKNKGNATY
QGMPFRDLYSSCREAFLVSSDLALRAQLTEFLDHKLVKSKRSVDGSEQLT
IPIDGALLQQFLEEQEKKASFLDH

BO07729.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Orc2-PA 618 CG3041-PA 1..618 1..618 3150 100 Plus