Clone Sequence Records
BO07732.3prime Sequence
903 bp (782 high quality bases) assembled on 2006-01-06
> BO07732.3prime
ATGGTCTAGAAAGCTTGCCATTTGCGTCTGTTTAACTGGACCCATCCATG
GAGTGGGATTCACATAGAGTTGAGATATGGTGCCTCGCAGTGAGTCCATG
CCCTGATTGAGGGGCACCGGCTTGGGCTTGGCGTCCACATTGCTCATCCA
CTTCGACCAGGCATCCTGGGCCAGTTGCCGGCGCTGTTCCTCTTTCAAGG
CCTTGGACAACATGGCGCGTCGCTTCTCCTCGCGCTGCGCCTGCTGCTGA
CTCTGCTTTTTTAGCCACCAGTCCTCAACGACCCTGCGAATCTCGTCCTT
GGACACCTTGCGAATGCGTCTGGGTGCCGTCGATGAGCTCGGCCCGGATC
CCAGCGATCCCAGTCCGGATAAGGACGATACGACGGGATTCTTGCGCAGT
GACTCCAACGGATTCTTGCGCAGAGCTATGCTGGCCTTCATGGCCGCGTC
TTGGATGTGGCTCTCCAGCTGCAAGTTTGCCGCCTGGCGGGCCTTGTCCT
TTAGCCACTGCTCGTAGCACATCCTGGCCAGCTGCTTGCGCTCCTCCGTC
CGCTGCTGCTTGAACTCCTGCTCCTCCTTGATTCGCCGCTGCTTCTCTAG
TAATTGCTGCTGCTTGGCTGAGTACCAGTTCTGATAGGCGGCCTCTGGTT
GGCGGTCCACCTTAATTCCCTTGCAGTGGCTGAGATAGTTGAGGGAGCTT
TCCTGCGAGCTGAGACACAGCGAGGGCACCAAGTTGCTCTGGATCTCCGA
TCGCTTGAGTCCGCCGAGCGACCAGTTGTCCGTAGATTGGGGCGAAGGAT
TTCACCGTCGTCCTTGAAGAAGTATGTGCGTGTGGTGTTCTGGGCGAGCG
AGCTCGGCGAAGACATGGAGTTTAGTGAGCCTCCGGATGACGGGGAGCGC
GCA
BO07732.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-PA | 966 | CG7251-RA | 179..963 | 803..19 | 3925 | 100 | Minus |
CG7251-PA | 966 | CG7251-RA | 78..178 | 903..803 | 505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 1243 | CG7251-RB | 201..1086 | 903..19 | 4405 | 99.9 | Minus |
CG7251-RA | 1209 | CG7251-RA | 201..1086 | 903..19 | 4405 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5587272..5587915 | 19..662 | 3220 | 100 | Plus |
2L | 23513712 | 2L | 5587969..5588214 | 659..903 | 1180 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-11 22:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 620..484 | 139 | 58.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 614..531 | 123 | 60.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 614..531 | 123 | 60.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 614..552 | 117 | 65.1 | Minus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 616..548 | 111 | 62.3 | Minus |
BO07732.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:32 Download gff for
BO07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 79..966 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:22 Download gff for
BO07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 79..966 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:21 Download gff for
BO07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 202..1086 | 19..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:04 Download gff for
BO07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 202..1086 | 19..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:04 Download gff for
BO07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5587272..5587913 | 19..660 | 100 | <- | Plus |
2L | 5587971..5588213 | 661..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:21 Download gff for
BO07732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5587272..5587913 | 19..660 | 100 | <- | Plus |
arm_2L | 5587971..5588213 | 661..902 | 99 | | Plus |
BO07732.5prime Sequence
860 bp (801 high quality bases) assembled on 2006-01-06
> BO07732.5prime
GAAGTTATCAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGAC
AAATAGTCCTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGC
TCCCCGTCATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCT
CGCCCAGAACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATC
CTTCGCCCCAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCG
GAGATCCAGAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAG
CTCCCTCAACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAAC
CAGAGGCCGCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTA
GAGAAGCAGCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGAC
GGAGGAGCGCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGG
ACAAGGCCCGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGAC
GCGGCCATGAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACT
GCGCAAGAATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGAT
CCGGGCCGAGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAG
GACGAGATTCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCA
GCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAGGCCT
TGAAAGAGGAACAGCGCCGGCAACTGGCCCAGGATGCCTGGTCGAAGTGG
ATGAGCAATG
BO07732.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-PA | 966 | CG7251-RA | 1..844 | 17..860 | 4195 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 1243 | CG7251-RB | 124..967 | 17..860 | 4205 | 99.9 | Plus |
CG7251-RA | 1209 | CG7251-RA | 124..967 | 17..860 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5587391..5587915 | 860..336 | 2625 | 100 | Minus |
2L | 23513712 | 2L | 5587969..5588291 | 339..17 | 1600 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 23:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 378..514 | 139 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 384..446 | 117 | 65.1 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 382..450 | 111 | 62.3 | Plus |
BO07732.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:33 Download gff for
BO07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:23 Download gff for
BO07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:24 Download gff for
BO07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..967 | 4..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:17 Download gff for
BO07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..967 | 4..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:17 Download gff for
BO07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5587971..5588300 | 4..337 | 98 | | Minus |
2L | 5587391..5587913 | 338..860 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:24 Download gff for
BO07732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5587391..5587913 | 338..860 | 100 | <- | Minus |
arm_2L | 5587971..5588300 | 4..337 | 98 | | Minus |
BO07732.complete Sequence
997 bp (997 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630910
> BO07732.complete
GAAGTTATCAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGAC
AAATAGTCCTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGC
TCCCCGTCATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCT
CGCCCAGAACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATC
CTTCGCCCCAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCG
GAGATCCAGAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAG
CTCCCTCAACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAAC
CAGAGGCCGCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTA
GAGAAGCAGCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGAC
GGAGGAGCGCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGG
ACAAGGCCCGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGAC
GCGGCCATGAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACT
GCGCAAGAATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGAT
CCGGGCCGAGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAG
GACGAGATTCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCA
GCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAGGCCT
TGAAAGAGGAACAGCGCCGGCAACTGGCCCAGGATGCCTGGTCGAAGTGG
ATGAGCAATGTGGACGCCAAGCCCAAGCCGGTGCCCCTCAATCAGGGCAT
GGACTCACTGCGAGGCACCATATCTCAACTCTATGTGAATCCCACTCCAT
GGATGGGTCCAGTTAAACAGACGCAAATGGCAAGCTTTCTAGACCAT
BO07732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 966 | CG7251-PB | 1..963 | 17..979 | 4800 | 99.9 | Plus |
CG7251-RA | 966 | CG7251-PA | 1..963 | 17..979 | 4800 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-RB | 1243 | CG7251-RB | 124..1086 | 17..979 | 4800 | 99.9 | Plus |
CG7251-RA | 1209 | CG7251-RA | 124..1086 | 17..979 | 4800 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5587272..5587915 | 979..336 | 3220 | 100 | Minus |
2L | 23513712 | 2L | 5587969..5588291 | 339..17 | 1600 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 00:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 378..514 | 139 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 384..467 | 123 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 384..446 | 117 | 65.1 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 382..450 | 111 | 62.3 | Plus |
BO07732.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:00 Download gff for
BO07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 1..966 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:40 Download gff for
BO07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..1086 | 4..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:18 Download gff for
BO07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 124..1086 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:00 Download gff for
BO07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 115..1086 | 4..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:56 Download gff for
BO07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7251-RA | 124..1086 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:56 Download gff for
BO07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5587270..5587913 | 338..981 | 99 | <- | Minus |
2L | 5587971..5588291 | 17..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:18 Download gff for
BO07732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5587270..5587913 | 338..981 | 99 | <- | Minus |
arm_2L | 5587971..5588291 | 17..337 | 99 | | Minus |
BO07732.pep Sequence
Translation from 16 to 997
> BO07732.pep
MAFCGHVTSSGQIVLRDEIFSSRTCIARSPSSGGSLNSMSSPSSLAQNTT
RTYFFKDDGGNPSPQSTDNWSLGGLKRSEIQSNLVPSLCLSSQESSLNYL
SHCKGIKVDRQPEAAYQNWYSAKQQQLLEKQRRIKEEQEFKQQRTEERKQ
LARMCYEQWLKDKARQAANLQLESHIQDAAMKASIALRKNPLESLRKNPV
VSSLSGLGSLGSGPSSSTAPRRIRKVSKDEIRRVVEDWWLKKQSQQQAQR
EEKRRAMLSKALKEEQRRQLAQDAWSKWMSNVDAKPKPVPLNQGMDSLRG
TISQLYVNPTPWMGPVKQTQMASFLDH
BO07732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7251-PB | 321 | CG7251-PB | 1..321 | 1..321 | 1655 | 100 | Plus |
CG7251-PA | 321 | CG7251-PA | 1..321 | 1..321 | 1655 | 100 | Plus |
CG18266-PA | 486 | CG18266-PA | 230..477 | 47..316 | 311 | 31.7 | Plus |
CG14011-PC | 388 | CG14011-PC | 137..387 | 29..313 | 290 | 31.1 | Plus |
CG14011-PB | 388 | CG14011-PB | 137..387 | 29..313 | 290 | 31.1 | Plus |