Clone Sequence Records
BO07736.5prime Sequence
814 bp (780 high quality bases) assembled on 2006-01-06
> BO07736.5prime
GAAGTTATCAGTCGACATGAGCGCCTATTATCGGCGCGCGGCGTTGCGGA
AGAAGAGCCCAAGCCGAGGGTCATCCTTCGAGTTGGAGATGAACGAGTCT
GGCTACACATCCTTCCTGGCGCTGCACAATTCCACCGCGGAGACGCCATT
TTTATTGGAGGACGCTGAGGGCGAAAACTGTCGCAATGCATCGAATACCA
CAACATTCTTTCGGGGGCTGAACACGCCCAGTGGCCACCAGGAGCAGGAC
CTTTACTGGGGCAAGCCCTATCCCAGAACACAGCCCCAAAAGAAATTTTC
CGCGGAGGAGGAGCCTTTCTCTATGACTCCGCGTCTGCAGGATGAGCATA
GTCTGCCCAAGCGACGCAAGAAACACTTTCAATCGCCACACAGTAGCCCC
AAGAAGTCCAAAAAGCTGCTCTTTCCCCACATAGAAGAACCGCCCAAGAA
TCGCTTCTACGGCGGTGTCGAAAAGCTGGATATCGTGGCCAAGCTGGCGC
AATGGCAACCGGCACTGCAGTGCATACTGCGTCATGTGGGCGCCCACACG
CTGGACGTGATGACCAAGGTATCGCCGGCCTGGAAGCAGGCTGTTTATCG
CAGCCAACGCGACTTGGAGCGCCTACAGAACCACCGACTCAAATTGAATC
TAACCAAAGAGAATCCTCACGTGCCCAAGCGGTGCAGCCATGTGCCCAAG
GCAAACCACACAGTGCCATTGCAGACCTCGAACCATAGCAGCCTGGCCAA
CAGCGCCGCCTCGCTAATGGACTCGGGGCACTCGAGCATCCACCTGATGG
ACGTGGATGCCGGG
BO07736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10800-PA | 1236 | Rca1-RA | 1..797 | 17..813 | 3935 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1552 | CG10800-RA | 108..904 | 17..813 | 3955 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6852422..6853218 | 17..813 | 3955 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:20:13 has no hits.
BO07736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:40 Download gff for
BO07736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-PA | 1..797 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:35 Download gff for
BO07736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10800-PA | 1..797 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:07:54 Download gff for
BO07736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 99..904 | 8..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:10 Download gff for
BO07736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 99..904 | 8..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:10 Download gff for
BO07736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6852413..6853218 | 8..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:07:54 Download gff for
BO07736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6852413..6853218 | 8..814 | 99 | | Plus |
BO07736.3prime Sequence
888 bp (814 high quality bases) assembled on 2006-01-06
> BO07736.3prime
ATGGTCTAGAAAGCTTGCAAAGCAGAGCCGCTTGAGCGAGTTCTTCCTTG
TGATTTTCGGATCACGGTTCTGGGCACGTTGTGGCGGCGTCAGTCGCTCC
CGTGGCATCATCAGTTTGGATGGTGTGTCCAGTTCGGTGACCAGGCAACG
CTCGCCGGGATGCGACTTGCACAGACAGTTGACGCAGAACCGAAACTGGC
AGATGACACTGGTGCATTCGGCGAAGTTATATGGCGGTCCTTGCGGTGAA
GTCCTGACCTCGTCAAGATCCAGGGACAGGAAGCGTTTGAGAGGCGGACC
CGTCATGCAGGGGAATGTGCTGGTTGTACGTCCAATAGGCAGAGTTTGCG
ACAATAGGTTTTCGCCACACTTGGCCGCCTCGCTTATGAAAACCCGGCTG
CCTCGACCGCATCGCGGACACTTGACGCGCTGCGTCTGCTCGCGCAGCAC
CCTTCCGGCATCCACGTCCATCAGGTGGATGCTCGAGTTGCCCGAGTCCA
TTAGCGAGGCGGCGCTGTTGGCCAGGCTGCTATGGTTCGAGGTCTGCAAT
GGCACTGTGTGGTTTGCCTTGGGCACATGGCTGCACCGCTTGGGCACGTG
AGGATTCTCTTTGGTTAGATTCAATTTGAGTCGGTGGTTCTGTAGGCGCT
CCAAGTCGCGTTGGCTGCGATAAACAGCCTGCTTCCAGGCCGGCGATACC
TTGGTCATCACGTCCAGCGTGTGGGCGCCCACATGACGCAGTATGCACTG
CAGTGCCGGTTGCCATTGCGCCAGCTTGGCCACGATATCCAGCTTTTCGA
CACCGCCGTAGAAGCGATTCTTGGGCGGTTCTTCTATGTGGGGAAAGAGC
AGCTTTTTGGACTTCTTGGGGCTACTGTGTGGCGATTG
BO07736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10800-PA | 1236 | Rca1-RA | 364..1233 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1552 | CG10800-RA | 471..1340 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6852785..6853654 | 888..19 | 4350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:58:09 has no hits.
BO07736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:39 Download gff for
BO07736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-PA | 364..1236 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:34 Download gff for
BO07736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10800-PA | 364..1236 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:03 Download gff for
BO07736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 471..1347 | 10..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:19 Download gff for
BO07736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 471..1347 | 10..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:19 Download gff for
BO07736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6852785..6853661 | 10..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:03 Download gff for
BO07736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6852785..6853661 | 10..888 | 99 | | Minus |
BO07736.complete Sequence
1267 bp (1267 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630912
> BO07736.complete
GAAGTTATCAGTCGACATGAGCGCCTATTATCGGCGCGCGGCGTTGCGGA
AGAAGAGCCCAAGCCGAGGGTCATCCTTCGAGTTGGAGATGAACGAGTCT
GGCTACACATCCTTCCTGGCGCTGCACAATTCCACCGCGGAGACGCCATT
TTTATTGGAGGACGCTGAGGGCGAAAACTGTCGCAATGCATCGAATACCA
CAACATTCTTTCGGGGGCTGAACACGCCCAGTGGCCACCAGGAGCAGGAC
CTTTACTGGGGCAAGCCCTATCCCAGAACACAGCCCCAAAAGAAATTTTC
CGCGGAGGAGGAGCCTTTCTCTATGACTCCGCGTCTGCAGGATGAGCATA
GTCTGCCCAAGCGACGCAAGAAACACTTTCAATCGCCACACAGTAGCCCC
AAGAAGTCCAAAAAGCTGCTCTTTCCCCACATAGAAGAACCGCCCAAGAA
TCGCTTCTACGGCGGTGTCGAAAAGCTGGATATCGTGGCCAAGCTGGCGC
AATGGCAACCGGCACTGCAGTGCATACTGCGTCATGTGGGCGCCCACACG
CTGGACGTGATGACCAAGGTATCGCCGGCCTGGAAGCAGGCTGTTTATCG
CAGCCAACGCGACTTGGAGCGCCTACAGAACCACCGACTCAAATTGAATC
TAACCAAAGAGAATCCTCACGTGCCCAAGCGGTGCAGCCATGTGCCCAAG
GCAAACCACACAGTGCCATTGCAGACCTCGAACCATAGCAGCCTGGCCAA
CAGCGCCGCCTCGCTAATGGACTCGGGCAACTCGAGCATCCACCTGATGG
ACGTGGATGCCGGAAGGGTGCTGCGCGAGCAGACGCAGCGCGTCAAGTGT
CCGCGATGCGGTCGAGGCAGCCGGGTTTTCATAAGCGAGGCGGCCAAGTG
TGGCGAAAACCTATTGTCGCAAACTCTGCCTATTGGACGTACAACCAGCA
CATTCCCCTGCATGACGGGTCCGCCTCTCAAACGCTTCCTGTCCCTGGAT
CTTGACGAGGTCAGGACTTCACCGCAAGGACCGCCATATAACTTCGCCGA
ATGCACCAGTGTCATCTGCCAGTTTCGGTTCTGCGTCAACTGTCTGTGCA
AGTCGCATCCCGGCGAGCGTTGCCTGGTCACCGAACTGGACACACCATCC
AAACTGATGATGCCACGGGAGCGACTGACGCCGCCACAACGTGCCCAGAA
CCGTGATCCGAAAATCACAAGGAAGAACTCGCTCAAGCGGCTCTGCTTTG
CAAGCTTTCTAGACCAT
BO07736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1236 | CG10800-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1552 | CG10800-RA | 108..1340 | 17..1249 | 6165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6852422..6853654 | 17..1249 | 6165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:22:22 has no hits.
BO07736.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:47 Download gff for
BO07736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 1..1236 | 17..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:25 Download gff for
BO07736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 90..1338 | 8..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:51 Download gff for
BO07736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 108..1340 | 17..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:47 Download gff for
BO07736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 90..1338 | 8..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:18 Download gff for
BO07736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 108..1340 | 17..1251 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:18 Download gff for
BO07736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6852422..6853654 | 17..1251 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:51 Download gff for
BO07736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6852422..6853654 | 17..1251 | 99 | | Plus |
BO07736.pep Sequence
Translation from 16 to 1267
> BO07736.pep
MSAYYRRAALRKKSPSRGSSFELEMNESGYTSFLALHNSTAETPFLLEDA
EGENCRNASNTTTFFRGLNTPSGHQEQDLYWGKPYPRTQPQKKFSAEEEP
FSMTPRLQDEHSLPKRRKKHFQSPHSSPKKSKKLLFPHIEEPPKNRFYGG
VEKLDIVAKLAQWQPALQCILRHVGAHTLDVMTKVSPAWKQAVYRSQRDL
ERLQNHRLKLNLTKENPHVPKRCSHVPKANHTVPLQTSNHSSLANSAASL
MDSGNSSIHLMDVDAGRVLREQTQRVKCPRCGRGSRVFISEAAKCGENLL
SQTLPIGRTTSTFPCMTGPPLKRFLSLDLDEVRTSPQGPPYNFAECTSVI
CQFRFCVNCLCKSHPGERCLVTELDTPSKLMMPRERLTPPQRAQNRDPKI
TRKNSLKRLCFASFLDH
BO07736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-PA | 411 | CG10800-PA | 1..411 | 1..411 | 2198 | 100 | Plus |
