Clone BO07738 Report

Search the DGRC for BO07738

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptSer7-RA
Protein status:BO07738.pep: validated full length
Sequenced Size:1225

Clone Sequence Records

BO07738.3prime Sequence

886 bp (787 high quality bases) assembled on 2006-01-06

> BO07738.3prime
ATGGTCTAGAAAGCTTGCAATGCGATTGGCTCGAATGGTGCTTTCTATCC
AGTCCATGTAGCTGCTGACCCGGGTGTAAATTCCGGAAAACAACGCTGTG
CCACAGTGTTTCCGTCCAATGGAGACCACGCCGGCCAGATAGACATATCG
ATTGCCGCTCGCCGTGTTTGCCTCTACGGTCAGTGGTCCGCCGGAGTCGC
CACTGCAGGAATCAACGCCAATCTCGCCGCCGGCACACATCTGACTATCG
GCGAGCGTAATCTTGGTGTCCTTGTAAAACGCCTCCTGGCACTGATCCTG
CGGCTGGATGTGCAGCATCGCCTTTTGCTTGATCTTGCTGCTGCCGCTGG
ACTCGGTCTTGCCCCAGCCGGAAACATCGGCGGCTGAGCCGGCCAGCTGA
TTGGCATACCTGCCCCTCTGCGGTGGCAAACAGACGGGCTCCAGATTCTG
CATCTGCAGCCAGTTCACCGGACGTGATAAACGCAGCAGGGCTATATCGT
TTCTATAGTTCAATTCCGAGTACTGCGCATGCGGCAATATTCGATCGATG
GTCACCCGGATATGCGGCGGAGCACATTCGCGTACGCCATTCAAATCATT
CTCGCAATCCGGATCGGTGTCCCGATTCCATTCACCCAAAATGGCTGCGG
TGAGATTCCTGCCCATTGTGTGAATGCAGTGGGCGGCCGTTAAGAGCCAT
CTCTGGGCGATAAAGGATGCGCCGCACGCATAGTCCTTGCCACCGCTCAC
TGTCTCGTACTCCAGCAGAGTGGTCCACGGGAACTCGAAGAGTCCGGTAT
TATGACCACCGACCAAGCGAAACGAANAGGCGGAGCCGCAGTACGGATGC
TCGGGCAGTTGGTCGATACCGCTGGGTGGGCGTGGC

BO07738.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2045-PA 1194 Ser7-RA 324..1191 886..19 4321 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1413 CG2045-RA 428..1295 886..19 4329 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9866085..9866952 886..19 4329 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 22:01:38 has no hits.

BO07738.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:43 Download gff for BO07738.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-PA 324..1194 15..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:39 Download gff for BO07738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2045-PA 324..1194 15..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:22 Download gff for BO07738.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 428..1304 8..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:34 Download gff for BO07738.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 428..1304 8..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:34 Download gff for BO07738.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9866085..9866955 14..886 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:22 Download gff for BO07738.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9760118..9760988 14..886 99 -> Minus

BO07738.5prime Sequence

924 bp (805 high quality bases) assembled on 2006-01-06

> BO07738.5prime
GAAGTTATCAGTCGACATGCTCCTGCTGATACCGCTTTTCCTGACCCTTT
TGGGGGCTGAGGCCCAGCAATTTGGCAAAGCTATCATGCATTTTGGCAAC
TGCAACTCGGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTG
CGACTTTTATGCCGTAGATAAACTTATGGAATTGGCCAGCAAACAACAGT
GCTTCTCCCGCCAGCGACCCGATCTGGTTTGCTGCCCCCGCGAGACGAAT
ATTATACCGCCATTGGCACCCAGGATCAGTAATGGGACCACTAATGCCAC
GAGCAGCACCACAACGCTGAAACTGCTGCCTCGCACCACGCCACGCCCAC
CCAGCGGTATCGACCAACTGCCCGAGCATCCGTACTGCGGCTCCGCCTTT
TCGTTTCGCTTGGTCGGTGGTCATAATACCGGACTCTTCGAGTTCCCGTG
GACCACTCTGCTGGAGTACGAGACAGTGAGCGGTGGCAAGGACTATGCGT
GCGGCGCATCCTTTATCGCCCAGAGATGGCTCTTAACGGCCGCCCACTGC
ATTCACACAATGGGCAGGAATCTCACCGCAGCCATTTTGGGTGAATGGAA
TCGGGACACCGATCCGGATTGCGAGAATGATTTGAATGGCGTACGCGAAT
GTGCTCCGCCGCATATCCGGGTGACCATCGATCGAATATTGCCGCATGCG
CAGTACTCGGAATTGAACTATAGAAACGATATAGCCCTGCTGCGTTTATC
ACGTCCGGTGAACTGGCTGCAGATGCAGAATCTGGAGCCCGTCTGTTTGC
CACCGCAGAGGGGCAGGTATGCCAATCAGCTGGCCGGCTCAGCCGCCGAT
GTTTTCGGCTGGGGCAAGACCGAGTCCAGCGGCAGCAGCAAGATCAAGCA
AAAGGCGATGCTGCACATCCAGCC

BO07738.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2045-PA 1194 Ser7-RA 1..908 17..924 4515 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1413 CG2045-RA 105..1012 17..924 4525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9865971..9866669 226..924 3480 99.9 Plus
X 23542271 X 9865459..9865609 78..228 755 100 Plus
X 23542271 X 9865337..9865397 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:43:27 has no hits.

BO07738.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:44 Download gff for BO07738.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:41 Download gff for BO07738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2045-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:33 Download gff for BO07738.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 98..1012 8..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:19 Download gff for BO07738.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 98..1012 8..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:19 Download gff for BO07738.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9865330..9865397 8..77 94 -> Plus
X 9865459..9865607 78..226 100 -> Plus
X 9865972..9866669 227..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:33 Download gff for BO07738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9759363..9759430 8..77 94 -> Plus
arm_X 9759492..9759640 78..226 100 -> Plus
arm_X 9760005..9760702 227..924 99   Plus

BO07738.complete Sequence

1225 bp (1225 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630914

> BO07738.complete
GAAGTTATCAGTCGACATGCTCCTGCTGATACCGCTTTTCCTGACCCTTT
TGGGGGCTGAGGCCCAGCAATTTGGCAAAGCTATCATGCATTTTGGCAAC
TGCAACTCGGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTG
CGACTTTTATGCCGTAGATAAACTTATGGAATTGGCCAGCAAACAACAGT
GCTTCTCCCGCCAGCGACCCGATCTGGTTTGCTGCCCCCGCGAGACGAAT
ATTATACCGCCATTGGCACCCAGGATCAGTAATGGGACCACTAATGCCAC
GAGCAGCACCACAACGCTGAAACTGCTGCCTCGCACCACGCCACGCCCAC
CCAGCGGTATCGACCAACTGCCCGAGCATCCGTACTGCGGCTCCGCCTTT
TCGTTTCGCTTGGTCGGTGGTCATAATACCGGACTCTTCGAGTTCCCGTG
GACCACTCTGCTGGAGTACGAGACAGTGAGCGGTGGCAAGGACTATGCGT
GCGGCGCATCCTTTATCGCCCAGAGATGGCTCTTAACGGCCGCCCACTGC
ATTCACACAATGGGCAGGAATCTCACCGCAGCCATTTTGGGTGAATGGAA
TCGGGACACCGATCCGGATTGCGAGAATGATTTGAATGGCGTACGCGAAT
GTGCTCCGCCGCATATCCGGGTGACCATCGATCGAATATTGCCGCATGCG
CAGTACTCGGAATTGAACTATAGAAACGATATAGCCCTGCTGCGTTTATC
ACGTCCGGTGAACTGGCTGCAGATGCAGAATCTGGAGCCCGTCTGTTTGC
CACCGCAGAGGGGCAGGTATGCCAATCAGCTGGCCGGCTCAGCCGCCGAT
GTTTCCGGCTGGGGCAAGACCGAGTCCAGCGGCAGCAGCAAGATCAAGCA
AAAGGCGATGCTGCACATCCAGCCGCAGGATCAGTGCCAGGAGGCGTTTT
ACAAGGACACCAAGATTACGCTCGCCGATAGTCAGATGTGTGCCGGCGGC
GAGATTGGCGTTGATTCCTGCAGTGGCGACTCCGGCGGACCACTGACCGT
AGAGGCAAACACGGCGAGCGGCAATCGATATGTCTATCTGGCCGGCGTGG
TCTCCATTGGACGGAAACACTGTGGCACAGCGTTGTTTTCCGGAATTTAC
ACCCGGGTCAGCAGCTACATGGACTGGATAGAAAGCACCATTCGAGCCAA
TCGCATTGCAAGCTTTCTAGACCAT

BO07738.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1194 CG2045-PA 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-RA 1413 CG2045-RA 105..1295 17..1207 5955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9865971..9866952 226..1207 4910 100 Plus
X 23542271 X 9865459..9865609 78..228 755 100 Plus
X 23542271 X 9865337..9865397 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:06:08 has no hits.

BO07738.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:48 Download gff for BO07738.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 1..1194 17..1211 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:27 Download gff for BO07738.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 113..1319 8..1218 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:59 Download gff for BO07738.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 105..1295 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:48 Download gff for BO07738.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 113..1319 8..1218 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:04 Download gff for BO07738.complete
Subject Subject Range Query Range Percent Splice Strand
Ser7-RA 105..1295 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:04 Download gff for BO07738.complete
Subject Subject Range Query Range Percent Splice Strand
X 9865337..9865397 17..77 100 -> Plus
X 9865459..9865607 78..226 100 -> Plus
X 9865972..9866952 227..1209 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:59 Download gff for BO07738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9759370..9759430 17..77 100 -> Plus
arm_X 9759492..9759640 78..226 100 -> Plus
arm_X 9760005..9760985 227..1209 99   Plus

BO07738.pep Sequence

Translation from 16 to 1225

> BO07738.pep
MLLLIPLFLTLLGAEAQQFGKAIMHFGNCNSVEFGRGTCIEKKDCDFYAV
DKLMELASKQQCFSRQRPDLVCCPRETNIIPPLAPRISNGTTNATSSTTT
LKLLPRTTPRPPSGIDQLPEHPYCGSAFSFRLVGGHNTGLFEFPWTTLLE
YETVSGGKDYACGASFIAQRWLLTAAHCIHTMGRNLTAAILGEWNRDTDP
DCENDLNGVRECAPPHIRVTIDRILPHAQYSELNYRNDIALLRLSRPVNW
LQMQNLEPVCLPPQRGRYANQLAGSAADVSGWGKTESSGSSKIKQKAMLH
IQPQDQCQEAFYKDTKITLADSQMCAGGEIGVDSCSGDSGGPLTVEANTA
SGNRYVYLAGVVSIGRKHCGTALFSGIYTRVSSYMDWIESTIRANRIASF
LDH

BO07738.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ser7-PA 397 CG2045-PA 1..397 1..397 2128 100 Plus
ea-PA 392 CG4920-PA 6..392 4..394 643 37.3 Plus
MP1-PA 390 CG1102-PA 26..390 26..394 621 38.6 Plus
MP1-PC 399 CG1102-PC 26..399 26..394 616 38.5 Plus
SPE-PA 400 CG16705-PA 9..398 3..392 608 36.3 Plus