Clone Sequence Records
BO07740.3prime Sequence
909 bp (759 high quality bases) assembled on 2006-01-06
> BO07740.3prime
ATGGTCTAGAAAGCTTGCTAGCTTCATCTTCATCTCCTCCAACATGCGAT
AGACCTTGACGAACTTCTTCTCCACCAACTCGGTGAATGTCTTGATCTCA
TTTCGCACCACCGAGAGTTCCATGGCAGCATCCGAGCCACCAGACTCACA
CTTCTTCGACTGCTTGTCGCTCTCATACCAACAGGCAATGCCATCCACAT
AATCGTCCACCAATTCGGGTGCTGTTATATCCTCCATGAAGGAAATGTCC
TTGCGTTTCACAAACGAACTCATTAGAAGTTGCAGGAAATCGCAGTTCCA
GTTGTTCTGCTGAAAGTAGAAATACTGCAGCGCCTTCAAACTGTCGAAGA
TGGTGATCTTCAACGAGTATATAGAGTTTCCTGATATATCCAACATTTGC
AGATGGCTCTGTTTCTTGAACAATCCCTCTGGCAACTCGTGGGCACCGGT
GGCAGAAAGATTCAACCGCAATAGCGATGTGAATCTACGCAACGGATTAC
CCTGAAGGTTTCCCAATGGATTGTGCGACAAATCCAGACTGCTCACATTG
GCGGCCAGTGGAATGTGTGGCATTTCCCTCAGCGAGTTGTTGTGCAAATC
CAGTTCATGGATCACTCCGTAGACGGTCAACCTCCTCAAATCGCAACTAT
GAGCTATAGCCACATCCAGCATGGTAAAGTTGAGTGTTAACTCCTGGAAG
ATATTTCCAGAAATATCCAACTGCGTAAATACTGGCTGCAGCTTCAACAG
TTCCGATTCGAAGGCGGTGAACCGGTTTCTGGCCAGATTTAGTTTGGTAA
GGTTTAAATTCCGATCGAAGACGCCTCTTGGTAGAGCATCTAATCGATTG
CCAGCCCAATTTANGTCCATTAGTTTCCTCATGCCGCTAAAAACTCCTAG
AGAAATTTG
BO07740.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11910-PA | 1416 | CG11910-RA | 523..1413 | 909..19 | 4411 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1717 | CG11910-RA | 632..1522 | 909..19 | 4429 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25381260..25382150 | 19..909 | 4429 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:56:33 has no hits.
BO07740.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:47 Download gff for
BO07740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 523..1416 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:44 Download gff for
BO07740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 523..1416 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:33 Download gff for
BO07740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 632..1526 | 13..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:31 Download gff for
BO07740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 632..1526 | 13..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:31 Download gff for
BO07740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25381256..25382150 | 13..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:33 Download gff for
BO07740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21206978..21207872 | 13..909 | 99 | | Plus |
BO07740.5prime Sequence
930 bp (843 high quality bases) assembled on 2006-01-06
> BO07740.5prime
GAAGTTATCAGTCGACATGGCGGTACTCTGGTGGTTGCTCTCGTTGCAGG
TGGTGCTGATCTTACCGCCCAGTTACCACCTGGCCACGCCCTCCTCCGGG
AGCGGTCAATTGCGTCGTCTTTGGCTGCAGGATCATTGCAGTGCGGGAAT
TTGCACGAATGTCGTGATTGGTCGCAGTGATTATGTGATCCTATCACAGG
CCCCCATTGGGGGCACCACCATGCTCACCTTTCTGAACTCGAGCATTGCC
AAGATACCGCATTTGTTGTTCGACACCTTTCCGGATCTACAGGTTCTGCG
CATGGAAAACTGTTCGCTGGAAACTTTCGAAAAACCGCAGTTTGAAGGTG
CCAGCAATCTGATGAGCTTGTTCTTGGGATATAATCGCCTGAAGGATATA
CCTAAGAATATATTCTTGGGCGCAGACAATCTGGCCACATTGCATCTGCA
AGGAAATCAGTTGAAGCAGCTGGGAAATCATAGTTTCCATGCCTTGAAAG
AAGTGAAGGAACTTTCGCTGGCGGAAAATCAACTTGAGCAAATTTCTCTA
GGAGTTTTTAGCGGCATGAGGAAACTAATGGACCTAAATTTGGCTGGCAA
TCGATTAGATGCTCTACCAAGAGGCGTCTTCGATCGGAATTTAAACCTTA
CCAAACTAAATCTGGCCAGAAACCGGTTCACCGCCTTCGAATCGGAACTG
TTGAAGCTGCAGCCAGTATTTACGCAGTTGGATATTTCTGGAAATATCTT
CCAGGAGTTAACACTCAACTTTACCATGCTGGATGTGGCTATAGCTCATA
GTTGCGATTTGAGGAGGTTGACCGTCTACGGAGTGATCCATGAACTGGAT
TTGCACAACAACTCGCTGAGGGAAATGCCACACATTCCACTGGGCGCCAA
TGTGAGCAGTCTGGATTTGTCGCACAATCA
BO07740.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11910-PA | 1416 | CG11910-RA | 1..913 | 17..929 | 4540 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1717 | CG11910-RA | 109..1022 | 16..929 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25381760..25382673 | 929..16 | 4555 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:01:51 has no hits.
BO07740.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:48 Download gff for
BO07740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:46 Download gff for
BO07740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:23 Download gff for
BO07740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 99..1022 | 7..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:14 Download gff for
BO07740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 99..1022 | 7..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:14 Download gff for
BO07740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25381760..25382683 | 7..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:23 Download gff for
BO07740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21207482..21208405 | 7..929 | 99 | | Minus |
BO07740.complete Sequence
1447 bp (1447 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630915
> BO07740.complete
GAAGTTATCAGTCGACATGGCGGTACTCTGGTGGTTGCTCTCGTTGCAGG
TGGTGCTGATCTTACCGCCCAGTTACCACCTGGCCACGCCCTCCTCCGGG
AGCGGTCAATTGCGTCGTCTTTGGCTGCAGGATCATTGCAGTGCGGGAAT
TTGCACGAATGTCGTGATTGGTCGCAGTGATTATGTGATCCTATCACAGG
CCCCCATTGGGGGCACCACCATGCTCACCTTTCTGAACTCGAGCATTGCC
AAGATACCGCATTTGTTGTTCGACACCTTTCCGGATCTACAGGTTCTGCG
CATGGAAAACTGTTCGCTGGAAACTTTCGAAAAACCGCAGTTTGAAGGTG
CCAGCAATCTGATGAGCTTGTTCTTGGGATATAATCGCCTGAAGGATATA
CCTAAGAATATATTCTTGGGCGCAGACAATCTGGCCACATTGCATCTGCA
AGGAAATCAGTTGAAGCAGCTGGGAAATCATAGTTTCCATGCCTTGAAAG
AAGTGAAGGAACTTTCGCTGGCGGAAAATCAACTTGAGCAAATTTCTCTA
GGAGTTTTTAGCGGCATGAGGAAACTAATGGACCTAAATTTGGCTGGCAA
TCGATTAGATGCTCTACCAAGAGGCGTCTTCGATCGGAATTTAAACCTTA
CCAAACTAAATCTGGCCAGAAACCGGTTCACCGCCTTCGAATCGGAACTG
TTGAAGCTGCAGCCAGTATTTACGCAGTTGGATATTTCTGGAAATATCTT
CCAGGAGTTAACACTCAACTTTACCATGCTGGATGTGGCTATAGCTCATA
GTTGCGATTTGAGGAGGTTGACCGTCTACGGAGTGATCCATGAACTGGAT
TTGCACAACAACTCGCTGAGGGAAATGCCACACATTCCACTGGCCGCCAA
TGTGAGCAGTCTGGATTTGTCGCACAATCCATTGGGAAACCTTCAGGGTA
ATCCGTTGCGTAGATTCACATCGCTATTGCGGTTGAATCTTTCTGCCACC
GGTGCCCACGAGTTGCCAGAGGGATTGTTCAAGAAACAGAGCCATCTGCA
AATGTTGGATATATCAGGAAACTCTATATACTCGTTGAAGATCACCATCT
TCGACAGTTTGAAGGCGCTGCAGTATTTCTACTTTCAGCAGAACAACTGG
AACTGCGATTTCCTGCAACTTCTAATGAGTTCGTTTGTGAAACGCAAGGA
CATTTCCTTCATGGAGGATATAACAGCACCCGAATTGGTGGACGATTATG
TGGATGGCATTGCCTGTTGGTATGAGAGCGACAAGCAGTCGAAGAAGTGT
GAGTCTGGTGGCTCGGATGCTGCCATGGAACTCTCGGTGGTGCGAAATGA
GATCAAGACATTCACCGAGTTGGTGGAGAAGAAGTTCGTCAAGGTCTATC
GCATGTTGGAGGAGATGAAGATGAAGCTAGCAAGCTTTCTAGACCAT
BO07740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1416 | CG11910-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-RA | 1717 | CG11910-RA | 109..1522 | 16..1429 | 7070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25381260..25382673 | 1429..16 | 7070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:03:24 has no hits.
BO07740.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:01 Download gff for
BO07740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-RA | 1..1416 | 17..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:43 Download gff for
BO07740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-RA | 118..1545 | 7..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:41 Download gff for
BO07740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 110..1522 | 17..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:01 Download gff for
BO07740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11910-RA | 118..1545 | 7..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:30 Download gff for
BO07740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alrm-RA | 110..1522 | 17..1431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:30 Download gff for
BO07740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25381256..25382672 | 17..1431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:41 Download gff for
BO07740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21206978..21208394 | 17..1431 | 99 | | Minus |
BO07740.pep Sequence
Translation from 16 to 1447
> BO07740.pep
MAVLWWLLSLQVVLILPPSYHLATPSSGSGQLRRLWLQDHCSAGICTNVV
IGRSDYVILSQAPIGGTTMLTFLNSSIAKIPHLLFDTFPDLQVLRMENCS
LETFEKPQFEGASNLMSLFLGYNRLKDIPKNIFLGADNLATLHLQGNQLK
QLGNHSFHALKEVKELSLAENQLEQISLGVFSGMRKLMDLNLAGNRLDAL
PRGVFDRNLNLTKLNLARNRFTAFESELLKLQPVFTQLDISGNIFQELTL
NFTMLDVAIAHSCDLRRLTVYGVIHELDLHNNSLREMPHIPLAANVSSLD
LSHNPLGNLQGNPLRRFTSLLRLNLSATGAHELPEGLFKKQSHLQMLDIS
GNSIYSLKITIFDSLKALQYFYFQQNNWNCDFLQLLMSSFVKRKDISFME
DITAPELVDDYVDGIACWYESDKQSKKCESGGSDAAMELSVVRNEIKTFT
ELVEKKFVKVYRMLEEMKMKLASFLDH
BO07740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alrm-PA | 471 | CG11910-PA | 1..471 | 1..471 | 2419 | 100 | Plus |
| CG10824-PA | 554 | CG10824-PA | 98..539 | 70..474 | 405 | 29.3 | Plus |
| CG4950-PB | 574 | CG4950-PB | 51..388 | 47..362 | 342 | 29.4 | Plus |
| CG4950-PC | 574 | CG4950-PC | 51..388 | 47..362 | 342 | 29.4 | Plus |
| CG16974-PB | 1257 | CG16974-PB | 258..616 | 51..419 | 276 | 27.8 | Plus |
