Clone BO07742 Report

Search the DGRC for BO07742

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG2493-RA
Protein status:BO07742.pep: validated full length
Sequenced Size:1459

Clone Sequence Records

BO07742.3prime Sequence

899 bp (826 high quality bases) assembled on 2006-01-06

> BO07742.3prime
ATGGTCTAGAAAGCTTGCGAAATCTTGGATCCATCGTGCTATGATGGCTG
CTTCCTTATCGCGGGCATCGCGCACAGAAGGTGGATCGGCCGGATCGCTG
TGGCGCAAGTCCAAGTGATGGGCTCCCTCGGGCAGGATGATGACGAAGAC
CTTGTCGTTGGGAGCCTGAAGCACACCGCCACCGCTCCAGGGATCCAGAA
GACCGTTGCTGAAGATGATGTTGGTCGCAGCCTCCAGGTTTCTGCCGCCA
TAGCGCAGAATGATGTCGTATGGCTTGGGGGTGAGACGGTAGTTCTTGTA
GCACTTTTCCGCGTAATCCTTGAAGTTCCAGCTGGACGTGCGGAACATGG
TTTCGGAGCCATTGGAGCAGATGGGCATCACCATCTGGTTGCAGCTCTGG
ATATTCCAACCGGAGTCATCGGCGTTGGAGTTGACGGATATATCGAGGCA
CTTGGCGGACTGTGTGTAGTTGGTGTAGACAGCCAAAGCGCTGGACATGG
CGTGCAGCAAATCGGCGTCGGTGGAATGCAGCTCCTTCAGGTAGTAGCAC
ACCTGCCTCACGGGATAGGCAGGTAATGGGGCCAGGAAACTGCTGTTGTA
CGGGTAATTGACCATGGCGAGATTGCTGTACACCTCCTCCACGTAGTCCA
GGAACTTCTTCAGATCGTCGTCGTTCTTCAGGGCATTGCATAGGTGGAAT
GCATCCGATATCTGCTTCTTGCCGGCCTCGCTGGCGCCCAGAGTCTCGAA
GAGTTTCCACGACTTGGCAATATTCAAGGTGCAGTTTTCGTTGTAGGCAT
TCTGGAACACCGATGTCACAATCCTGTAGAAGATGTCGCAATCGGGTATC
CCGGGGAACTGCAGAACGGGCGCCGAGGCTGCCAGGGCTCCGTTGACCA

BO07742.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-PA 1428 CG2493-RA 545..1425 899..19 4380 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-RB 1677 CG2493-RB 619..1499 899..19 4390 99.9 Minus
CG2493-RA 1860 CG2493-RA 619..1499 899..19 4390 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20461946..20462826 19..899 4390 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 00:16:10 has no hits.

BO07742.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:50 Download gff for BO07742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-PA 546..1428 16..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:50 Download gff for BO07742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-PA 546..1428 16..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:58 Download gff for BO07742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 620..1505 13..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:23 Download gff for BO07742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 620..1505 13..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:23 Download gff for BO07742.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20461940..20462825 13..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:58 Download gff for BO07742.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20461940..20462825 13..898 99   Plus

BO07742.5prime Sequence

900 bp (818 high quality bases) assembled on 2006-01-06

> BO07742.5prime
GAAGTTATCAGTCGACATGATTCTTCGCGATATGGGAGAAGCCACAGTGA
GAGCTGCACTGTTAGCGGTTTTGGGAATCCTGCTGATCGCGGGCTGTGAT
TGCAGCCAGCGGTTCAAGTACGAGATCAAGGAGTTCCAGGTGCCGCTGGA
CCATTTCAGCTTCCTGATCAACGCCACCTTCAACATCCGGTACTTGTACA
ACGACTCGTTCGTGGACAAGAGCAATGCCCGCACCCCGATTTTCTTCTAC
ACGGGCAACGAGGGGGACATCGAACTCTTCGCCCAGAATACCGGATTCCT
GTGGGAGCAGGCGGAACGACAGCGGGCTCTGGTGATCTTTGCGGAGCATC
GTTACTATGGAAAGTCATTGCCCTTCGGTAGCTCCACGTTCAACACCAGC
CTGCCGGAGCACTTGGCTTACTTCACAGTGGAGCAGACGCTCGAGGACTA
CGCCATGCTGATCACGTTCCTGCGGAACGATCGCCAGATGCCCGTGGTGG
CCTTCGGGGGCTCCTATGGCGGAATGCTGGCCGCCTGGTTCCGGATGAAG
TATCCGCATTTGGTCAACGGAGCCCTGGCAGCCTCGGCGCCCGTTCTGCA
GTTCCCCGGGATAACCGATTGCGACATCTTCTACAGGATTGTGACATCGG
TGTTCCAGAATGCCTACAACGAAAACTGCACCTTGAATATTGCCAAGTCG
TGGAAACTCTTCGAGACTCTGGGCGCCAGCGAGGCCGGCAAGAAGCAGAT
ATCGGATGCATTCCACCTATGCAATGCCCTGAAGAACGACGACGATCTGA
AGAAGTTCCTGGACTACGTGGAGGAGGTGTACAGCAATCTCGCCATGGTC
AATTACCCGTACAACAGCAGTTTCCTGGCCCCCATTACTGCCTATCCCGT

BO07742.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-PA 1428 CG2493-RA 1..866 17..882 4330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-RB 1677 CG2493-RB 75..958 17..900 4375 99.8 Plus
CG2493-RA 1860 CG2493-RA 75..958 17..900 4375 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20462487..20463370 900..17 4360 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 16:28:03 has no hits.

BO07742.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:51 Download gff for BO07742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:52 Download gff for BO07742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:31 Download gff for BO07742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 70..958 11..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:04:14 Download gff for BO07742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 70..958 11..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:04:14 Download gff for BO07742.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20462487..20463375 11..900 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:31 Download gff for BO07742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20462487..20463375 11..900 99   Minus

BO07742.complete Sequence

1459 bp (1459 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630916

> BO07742.complete
GAAGTTATCAGTCGACATGATTCTTCGCGATATGGGAGAAGCCACAGTGA
GAGCTGCACTGTTAGCGGTTTTGGGAATCCTGCTGATCGCGGGCTGTGAT
TGCAGCCAGCGGTTCAAGTACGAGATCAAGGAGTTCCAGGTGCCGCTGGA
CCATTTCAGCTTCCTGATCAACGCCACCTTCAACATCCGGTACTTGTACA
ACGACTCGTTCGTGGACAAGAGCAATGCCCGCACCCCGATTTTCTTCTAC
ACGGGCAACGAGGGGGACATCGAACTCTTCGCCCAGAATACCGGATTCCT
GTGGGAGCAGGCGGAACGACAGCGGGCTCTGGTGATCTTTGCGGAGCATC
GTTACTATGGAAAGTCATTGCCCTTCGGTAGCTCCACGTTCAACACCAGC
CTGCCGGAGCACTTGGCTTACTTCACAGTGGAGCAGACGCTCGAGGACTA
CGCCATGCTGATCACGTTCCTGCGGAACGATCGCCAGATGCCCGTGGTGG
CCTTCGGGGGCTCCTATGGCGGAATGCTGGCCGCCTGGTTCCGGATGAAG
TATCCGCATTTGGTCAACGGAGCCCTGGCAGCCTCGGCGCCCGTTCTGCA
GTTCCCCGGGATAACCGATTGCGACATCTTCTACAGGATTGTGACATCGG
TGTTCCAGAATGCCTACAACGAAAACTGCACCTTGAATATTGCCAAGTCG
TGGAAACTCTTCGAGACTCTGGGCGCCAGCGAGGCCGGCAAGAAGCAGAT
ATCGGATGCATTCCACCTATGCAATGCCCTGAAGAACGACGACGATCTGA
AGAAGTTCCTGGACTACGTGGAGGAGGTGTACAGCAATCTCGCCATGGTC
AATTACCCGTACAACAGCAGTTTCCTGGCCCCATTACCTGCCTATCCCGT
GAGGCAGGTGTGCTACTACCTGAAGGAGCTGCATTCCACCGACGCCGATT
TGCTGCACGCCATGTCCAGCGCTTTGGCTGTCTACACCAACTACACACAG
TCCGCCAAGTGCCTCGATATATCCGTCAACTCCAACGCCGATGACTCCGG
TTGGAATATCCAGAGCTGCAACCAGATGGTGATGCCCATCTGCTCCAATG
GCTCCGAAACCATGTTCCGCACGTCCAGCTGGAACTTCAAGGATTACGCG
GAAAAGTGCTACAAGAACTACCGTCTCACCCCCAAGCCATACGACATCAT
TCTGCGCTATGGCGGCAGAAACCTGGAGGCTGCGACCAACATCATCTTCA
GCAACGGTCTTCTGGATCCCTGGAGCGGTGGCGGTGTGCTTCAGGCTCCC
AACGACAAGGTCTTCGTCATCATCCTGCCCGAGGGAGCCCATCACTTGGA
CTTGCGCCACAGCGATCCGGCCGATCCACCTTCTGTGCGCGATGCCCGCG
ATAAGGAAGCAGCCATCATAGCACGATGGATCCAAGATTTCGCAAGCTTT
CTAGACCAT

BO07742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-RB 1428 CG2493-PB 1..1425 17..1441 7125 100 Plus
CG2493-RA 1428 CG2493-PA 1..1425 17..1441 7125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-RB 1677 CG2493-RB 75..1499 17..1441 7125 100 Plus
CG2493-RA 1860 CG2493-RA 75..1499 17..1441 7125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20461946..20463370 1441..17 7125 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:14:59 has no hits.

BO07742.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:02 Download gff for BO07742.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 1..1428 17..1444 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:44 Download gff for BO07742.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 75..1510 11..1447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:49 Download gff for BO07742.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 75..1499 17..1443 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:03 Download gff for BO07742.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 75..1510 11..1447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:50 Download gff for BO07742.complete
Subject Subject Range Query Range Percent Splice Strand
CG2493-RA 75..1499 17..1443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:50 Download gff for BO07742.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20461943..20463370 17..1443 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:49 Download gff for BO07742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20461943..20463370 17..1443 99   Minus

BO07742.pep Sequence

Translation from 16 to 1459

> BO07742.pep
MILRDMGEATVRAALLAVLGILLIAGCDCSQRFKYEIKEFQVPLDHFSFL
INATFNIRYLYNDSFVDKSNARTPIFFYTGNEGDIELFAQNTGFLWEQAE
RQRALVIFAEHRYYGKSLPFGSSTFNTSLPEHLAYFTVEQTLEDYAMLIT
FLRNDRQMPVVAFGGSYGGMLAAWFRMKYPHLVNGALAASAPVLQFPGIT
DCDIFYRIVTSVFQNAYNENCTLNIAKSWKLFETLGASEAGKKQISDAFH
LCNALKNDDDLKKFLDYVEEVYSNLAMVNYPYNSSFLAPLPAYPVRQVCY
YLKELHSTDADLLHAMSSALAVYTNYTQSAKCLDISVNSNADDSGWNIQS
CNQMVMPICSNGSETMFRTSSWNFKDYAEKCYKNYRLTPKPYDIILRYGG
RNLEAATNIIFSNGLLDPWSGGGVLQAPNDKVFVIILPEGAHHLDLRHSD
PADPPSVRDARDKEAAIIARWIQDFASFLDH

BO07742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2493-PB 475 CG2493-PB 1..475 1..475 2519 100 Plus
CG2493-PA 475 CG2493-PA 1..475 1..475 2519 100 Plus
CG9953-PA 508 CG9953-PA 59..507 40..479 334 25.9 Plus
CG18493-PA 480 CG18493-PA 49..479 30..472 318 24.9 Plus
CG3734-PB 473 CG3734-PB 54..473 44..473 311 23.6 Plus