Clone Sequence Records
BO07742.3prime Sequence
899 bp (826 high quality bases) assembled on 2006-01-06
> BO07742.3prime
ATGGTCTAGAAAGCTTGCGAAATCTTGGATCCATCGTGCTATGATGGCTG
CTTCCTTATCGCGGGCATCGCGCACAGAAGGTGGATCGGCCGGATCGCTG
TGGCGCAAGTCCAAGTGATGGGCTCCCTCGGGCAGGATGATGACGAAGAC
CTTGTCGTTGGGAGCCTGAAGCACACCGCCACCGCTCCAGGGATCCAGAA
GACCGTTGCTGAAGATGATGTTGGTCGCAGCCTCCAGGTTTCTGCCGCCA
TAGCGCAGAATGATGTCGTATGGCTTGGGGGTGAGACGGTAGTTCTTGTA
GCACTTTTCCGCGTAATCCTTGAAGTTCCAGCTGGACGTGCGGAACATGG
TTTCGGAGCCATTGGAGCAGATGGGCATCACCATCTGGTTGCAGCTCTGG
ATATTCCAACCGGAGTCATCGGCGTTGGAGTTGACGGATATATCGAGGCA
CTTGGCGGACTGTGTGTAGTTGGTGTAGACAGCCAAAGCGCTGGACATGG
CGTGCAGCAAATCGGCGTCGGTGGAATGCAGCTCCTTCAGGTAGTAGCAC
ACCTGCCTCACGGGATAGGCAGGTAATGGGGCCAGGAAACTGCTGTTGTA
CGGGTAATTGACCATGGCGAGATTGCTGTACACCTCCTCCACGTAGTCCA
GGAACTTCTTCAGATCGTCGTCGTTCTTCAGGGCATTGCATAGGTGGAAT
GCATCCGATATCTGCTTCTTGCCGGCCTCGCTGGCGCCCAGAGTCTCGAA
GAGTTTCCACGACTTGGCAATATTCAAGGTGCAGTTTTCGTTGTAGGCAT
TCTGGAACACCGATGTCACAATCCTGTAGAAGATGTCGCAATCGGGTATC
CCGGGGAACTGCAGAACGGGCGCCGAGGCTGCCAGGGCTCCGTTGACCA
BO07742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2493-PA | 1428 | CG2493-RA | 545..1425 | 899..19 | 4380 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2493-RB | 1677 | CG2493-RB | 619..1499 | 899..19 | 4390 | 99.9 | Minus |
CG2493-RA | 1860 | CG2493-RA | 619..1499 | 899..19 | 4390 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20461946..20462826 | 19..899 | 4390 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:16:10 has no hits.
BO07742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:50 Download gff for
BO07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-PA | 546..1428 | 16..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:50 Download gff for
BO07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-PA | 546..1428 | 16..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:58 Download gff for
BO07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 620..1505 | 13..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:23 Download gff for
BO07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 620..1505 | 13..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:23 Download gff for
BO07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20461940..20462825 | 13..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:58 Download gff for
BO07742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20461940..20462825 | 13..898 | 99 | | Plus |
BO07742.5prime Sequence
900 bp (818 high quality bases) assembled on 2006-01-06
> BO07742.5prime
GAAGTTATCAGTCGACATGATTCTTCGCGATATGGGAGAAGCCACAGTGA
GAGCTGCACTGTTAGCGGTTTTGGGAATCCTGCTGATCGCGGGCTGTGAT
TGCAGCCAGCGGTTCAAGTACGAGATCAAGGAGTTCCAGGTGCCGCTGGA
CCATTTCAGCTTCCTGATCAACGCCACCTTCAACATCCGGTACTTGTACA
ACGACTCGTTCGTGGACAAGAGCAATGCCCGCACCCCGATTTTCTTCTAC
ACGGGCAACGAGGGGGACATCGAACTCTTCGCCCAGAATACCGGATTCCT
GTGGGAGCAGGCGGAACGACAGCGGGCTCTGGTGATCTTTGCGGAGCATC
GTTACTATGGAAAGTCATTGCCCTTCGGTAGCTCCACGTTCAACACCAGC
CTGCCGGAGCACTTGGCTTACTTCACAGTGGAGCAGACGCTCGAGGACTA
CGCCATGCTGATCACGTTCCTGCGGAACGATCGCCAGATGCCCGTGGTGG
CCTTCGGGGGCTCCTATGGCGGAATGCTGGCCGCCTGGTTCCGGATGAAG
TATCCGCATTTGGTCAACGGAGCCCTGGCAGCCTCGGCGCCCGTTCTGCA
GTTCCCCGGGATAACCGATTGCGACATCTTCTACAGGATTGTGACATCGG
TGTTCCAGAATGCCTACAACGAAAACTGCACCTTGAATATTGCCAAGTCG
TGGAAACTCTTCGAGACTCTGGGCGCCAGCGAGGCCGGCAAGAAGCAGAT
ATCGGATGCATTCCACCTATGCAATGCCCTGAAGAACGACGACGATCTGA
AGAAGTTCCTGGACTACGTGGAGGAGGTGTACAGCAATCTCGCCATGGTC
AATTACCCGTACAACAGCAGTTTCCTGGCCCCCATTACTGCCTATCCCGT
BO07742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2493-PA | 1428 | CG2493-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2493-RB | 1677 | CG2493-RB | 75..958 | 17..900 | 4375 | 99.8 | Plus |
CG2493-RA | 1860 | CG2493-RA | 75..958 | 17..900 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20462487..20463370 | 900..17 | 4360 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:28:03 has no hits.
BO07742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:51 Download gff for
BO07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:13:52 Download gff for
BO07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:31 Download gff for
BO07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 70..958 | 11..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:04:14 Download gff for
BO07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 70..958 | 11..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:04:14 Download gff for
BO07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20462487..20463375 | 11..900 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:31 Download gff for
BO07742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20462487..20463375 | 11..900 | 99 | | Minus |
BO07742.complete Sequence
1459 bp (1459 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630916
> BO07742.complete
GAAGTTATCAGTCGACATGATTCTTCGCGATATGGGAGAAGCCACAGTGA
GAGCTGCACTGTTAGCGGTTTTGGGAATCCTGCTGATCGCGGGCTGTGAT
TGCAGCCAGCGGTTCAAGTACGAGATCAAGGAGTTCCAGGTGCCGCTGGA
CCATTTCAGCTTCCTGATCAACGCCACCTTCAACATCCGGTACTTGTACA
ACGACTCGTTCGTGGACAAGAGCAATGCCCGCACCCCGATTTTCTTCTAC
ACGGGCAACGAGGGGGACATCGAACTCTTCGCCCAGAATACCGGATTCCT
GTGGGAGCAGGCGGAACGACAGCGGGCTCTGGTGATCTTTGCGGAGCATC
GTTACTATGGAAAGTCATTGCCCTTCGGTAGCTCCACGTTCAACACCAGC
CTGCCGGAGCACTTGGCTTACTTCACAGTGGAGCAGACGCTCGAGGACTA
CGCCATGCTGATCACGTTCCTGCGGAACGATCGCCAGATGCCCGTGGTGG
CCTTCGGGGGCTCCTATGGCGGAATGCTGGCCGCCTGGTTCCGGATGAAG
TATCCGCATTTGGTCAACGGAGCCCTGGCAGCCTCGGCGCCCGTTCTGCA
GTTCCCCGGGATAACCGATTGCGACATCTTCTACAGGATTGTGACATCGG
TGTTCCAGAATGCCTACAACGAAAACTGCACCTTGAATATTGCCAAGTCG
TGGAAACTCTTCGAGACTCTGGGCGCCAGCGAGGCCGGCAAGAAGCAGAT
ATCGGATGCATTCCACCTATGCAATGCCCTGAAGAACGACGACGATCTGA
AGAAGTTCCTGGACTACGTGGAGGAGGTGTACAGCAATCTCGCCATGGTC
AATTACCCGTACAACAGCAGTTTCCTGGCCCCATTACCTGCCTATCCCGT
GAGGCAGGTGTGCTACTACCTGAAGGAGCTGCATTCCACCGACGCCGATT
TGCTGCACGCCATGTCCAGCGCTTTGGCTGTCTACACCAACTACACACAG
TCCGCCAAGTGCCTCGATATATCCGTCAACTCCAACGCCGATGACTCCGG
TTGGAATATCCAGAGCTGCAACCAGATGGTGATGCCCATCTGCTCCAATG
GCTCCGAAACCATGTTCCGCACGTCCAGCTGGAACTTCAAGGATTACGCG
GAAAAGTGCTACAAGAACTACCGTCTCACCCCCAAGCCATACGACATCAT
TCTGCGCTATGGCGGCAGAAACCTGGAGGCTGCGACCAACATCATCTTCA
GCAACGGTCTTCTGGATCCCTGGAGCGGTGGCGGTGTGCTTCAGGCTCCC
AACGACAAGGTCTTCGTCATCATCCTGCCCGAGGGAGCCCATCACTTGGA
CTTGCGCCACAGCGATCCGGCCGATCCACCTTCTGTGCGCGATGCCCGCG
ATAAGGAAGCAGCCATCATAGCACGATGGATCCAAGATTTCGCAAGCTTT
CTAGACCAT
BO07742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2493-RB | 1428 | CG2493-PB | 1..1425 | 17..1441 | 7125 | 100 | Plus |
CG2493-RA | 1428 | CG2493-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2493-RB | 1677 | CG2493-RB | 75..1499 | 17..1441 | 7125 | 100 | Plus |
CG2493-RA | 1860 | CG2493-RA | 75..1499 | 17..1441 | 7125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20461946..20463370 | 1441..17 | 7125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:14:59 has no hits.
BO07742.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:02 Download gff for
BO07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 1..1428 | 17..1444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:44 Download gff for
BO07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 75..1510 | 11..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:49 Download gff for
BO07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 75..1499 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:03 Download gff for
BO07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 75..1510 | 11..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:50 Download gff for
BO07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2493-RA | 75..1499 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:50 Download gff for
BO07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20461943..20463370 | 17..1443 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:49 Download gff for
BO07742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20461943..20463370 | 17..1443 | 99 | | Minus |
BO07742.pep Sequence
Translation from 16 to 1459
> BO07742.pep
MILRDMGEATVRAALLAVLGILLIAGCDCSQRFKYEIKEFQVPLDHFSFL
INATFNIRYLYNDSFVDKSNARTPIFFYTGNEGDIELFAQNTGFLWEQAE
RQRALVIFAEHRYYGKSLPFGSSTFNTSLPEHLAYFTVEQTLEDYAMLIT
FLRNDRQMPVVAFGGSYGGMLAAWFRMKYPHLVNGALAASAPVLQFPGIT
DCDIFYRIVTSVFQNAYNENCTLNIAKSWKLFETLGASEAGKKQISDAFH
LCNALKNDDDLKKFLDYVEEVYSNLAMVNYPYNSSFLAPLPAYPVRQVCY
YLKELHSTDADLLHAMSSALAVYTNYTQSAKCLDISVNSNADDSGWNIQS
CNQMVMPICSNGSETMFRTSSWNFKDYAEKCYKNYRLTPKPYDIILRYGG
RNLEAATNIIFSNGLLDPWSGGGVLQAPNDKVFVIILPEGAHHLDLRHSD
PADPPSVRDARDKEAAIIARWIQDFASFLDH
BO07742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2493-PB | 475 | CG2493-PB | 1..475 | 1..475 | 2519 | 100 | Plus |
CG2493-PA | 475 | CG2493-PA | 1..475 | 1..475 | 2519 | 100 | Plus |
CG9953-PA | 508 | CG9953-PA | 59..507 | 40..479 | 334 | 25.9 | Plus |
CG18493-PA | 480 | CG18493-PA | 49..479 | 30..472 | 318 | 24.9 | Plus |
CG3734-PB | 473 | CG3734-PB | 54..473 | 44..473 | 311 | 23.6 | Plus |