Clone Sequence Records
BO07746.3prime Sequence
767 bp (766 high quality bases) assembled on 2006-01-06
> BO07746.3prime
ATGGTCTAGAAAGCTTGCTTTAGTTTTGTTCTGGCGGCGTTCATTCTGTT
TTCGCTCCTCCTTTTGCGTCAGTATAATCAGCAAACGGCGGAACATGCTG
AGTACATCGAAGAACAAATCTAAAGCGTGCTGCACCACATCTCGATTTCC
GTTTCGGCACTTCTCCACAATGTTCTGTGTATCGTAGACGATGAAGGCAG
CCATAACGAAAACGCCGACGTAAAGTTGAGTCACTTGCACGAAGTAGGAC
TTGAAGACCATGTTAAAGAGACTCAGCAGCGCCATGGTGTTGATGACGCT
AACCAGCATCCCACCCAGATAGAGGTACTTGCCCTGCTCGGCCAGAAGGG
CGGACAAGGAGAGCGAGATGAAGGTGACGAAGGTGCCCGTAAGGGCAGAC
AGGATTATTGCCGGATTTATGCTGCATATATAGCCGAGGAGCGGTCCGAG
CGTCTGGCCGGAGCAGAATCCGAAGGCGTAGAGCATGCCCAAACGTGTAT
AATAGTTCTTGCCGTCATCCTTGTAGAAGTGCAGACCCAAGACCAGGACT
AGAGTGGCCACCGCCGCCAGGACTCCAAGATCGAGAAAGTCACGCATCTG
AAGCATGGCTCCCATGGCCGTGGCAGCGGCAGTGCTGCCCAGGACCATGT
AAACCTTAGACAGGTGCTCGCGCACATAGGGCTCATAACGGTCACCGAGC
CCGTTCATGAAGGTCTGGAAACGGTCGTTGATGTAATTCGCAGTATCTGC
CATGTCGACTGATAACT
BO07746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7188-PA | 738 | CG7188-RA | 1..735 | 753..19 | 3675 | 100 | Minus |
CG7188-PB | 714 | CG7188-RB | 1..693 | 753..61 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 1107 | CG7188-RA | 179..913 | 753..19 | 3675 | 100 | Minus |
BI-1-RB | 1247 | CG7188-RB | 179..871 | 753..61 | 3465 | 100 | Minus |
BI-1-RB | 1247 | CG7188-RB | 1007..1053 | 65..19 | 220 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8308092..8308545 | 232..685 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 8307793..8307965 | 60..232 | 865 | 100 | Plus |
3L | 28110227 | 3L | 8308696..8308763 | 686..753 | 340 | 100 | Plus |
3L | 28110227 | 3L | 8307339..8307382 | 19..62 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:29:31 has no hits.
BO07746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:58 Download gff for
BO07746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 15..753 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:02 Download gff for
BO07746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 15..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:02 Download gff for
BO07746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 7..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:21 Download gff for
BO07746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 7..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:21 Download gff for
BO07746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8307329..8307380 | 7..60 | 92 | <- | Plus |
3L | 8307794..8307964 | 61..231 | 100 | <- | Plus |
3L | 8308092..8308545 | 232..685 | 100 | <- | Plus |
3L | 8308696..8308771 | 686..760 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:02 Download gff for
BO07746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8301192..8301645 | 232..685 | 100 | <- | Plus |
arm_3L | 8301796..8301871 | 686..760 | 96 | | Plus |
arm_3L | 8300429..8300480 | 7..60 | 92 | <- | Plus |
arm_3L | 8300894..8301064 | 61..231 | 100 | <- | Plus |
BO07746.5prime Sequence
767 bp (766 high quality bases) assembled on 2006-01-06
> BO07746.5prime
GAAGTTATCAGTCGACATGGCAGATACTGCGAATTACATCAACGACCGTT
TCCAGACCTTCATGAACGGGCTCGGTGACCGTTATGAGCCCTATGTGCGC
GAGCACCTGTCTAAGGTTTACATGGTCCTGGGCAGCACTGCCGCTGCCAC
GGCCATGGGAGCCATGCTTCAGATGCGTGACTTTCTCGATCTTGGAGTCC
TGGCGGCGGTGGCCACTCTAGTCCTGGTCTTGGGTCTGCACTTCTACAAG
GATGACGGCAAGAACTATTATACACGTTTGGGCATGCTCTACGCCTTCGG
ATTCTGCTCCGGCCAGACGCTCGGACCGCTCCTCGGCTATATATGCAGCA
TAAATCCGGCAATAATCCTGTCTGCCCTTACGGGCACCTTCGTCACCTTC
ATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTACCTCTA
TCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTC
TCTTTAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTAC
GTCGGCGTTTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACAT
TGTGGAGAAGTGCCGAAACGGAAATCGAGATGTGGTGCAGCACGCTTTAG
ATTTGTTCTTCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTG
ACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAAAACTAA
AGCAAGCTTTCTAGACC
BO07746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7188-PA | 738 | CG7188-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
CG7188-PB | 714 | CG7188-RB | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 1107 | CG7188-RA | 179..913 | 17..751 | 3675 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 179..871 | 17..709 | 3465 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 1007..1053 | 705..751 | 220 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8308092..8308545 | 538..85 | 2270 | 100 | Minus |
3L | 28110227 | 3L | 8307793..8307965 | 710..538 | 865 | 100 | Minus |
3L | 28110227 | 3L | 8308696..8308763 | 84..17 | 340 | 100 | Minus |
3L | 28110227 | 3L | 8307339..8307382 | 751..708 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:20:56 has no hits.
BO07746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:27:59 Download gff for
BO07746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:03 Download gff for
BO07746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-PA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:07:59 Download gff for
BO07746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:50 Download gff for
BO07746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 171..923 | 10..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:50 Download gff for
BO07746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8307329..8307380 | 710..763 | 92 | <- | Minus |
3L | 8307794..8307964 | 539..709 | 100 | <- | Minus |
3L | 8308092..8308545 | 85..538 | 100 | <- | Minus |
3L | 8308696..8308771 | 10..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:07:59 Download gff for
BO07746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8300429..8300480 | 710..763 | 92 | <- | Minus |
arm_3L | 8300894..8301064 | 539..709 | 100 | <- | Minus |
arm_3L | 8301192..8301645 | 85..538 | 100 | <- | Minus |
arm_3L | 8301796..8301871 | 10..84 | 96 | | Minus |
BO07746.complete Sequence
769 bp (769 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638653
> BO07746.complete
GAAGTTATCAGTCGACATGGCAGATACTGCGAATTACATCAACGACCGTT
TCCAGACCTTCATGAACGGGCTCGGTGACCGTTATGAGCCCTATGTGCGC
GAGCACCTGTCTAAGGTTTACATGGTCCTGGGCAGCACTGCCGCTGCCAC
GGCCATGGGAGCCATGCTTCAGATGCGTGACTTTCTCGATCTTGGAGTCC
TGGCGGCGGTGGCCACTCTAGTCCTGGTCTTGGGTCTGCACTTCTACAAG
GATGACGGCAAGAACTATTATACACGTTTGGGCATGCTCTACGCCTTCGG
ATTCTGCTCCGGCCAGACGCTCGGACCGCTCCTCGGCTATATATGCAGCA
TAAATCCGGCAATAATCCTGTCTGCCCTTACGGGCACCTTCGTCACCTTC
ATCTCGCTCTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTACCTCTA
TCTGGGTGGGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTC
TCTTTAACATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTAC
GTCGGCGTTTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACAT
TGTGGAGAAGTGCCGAAACGGAAATCGAGATGTGGTGCAGCACGCTTTAG
ATTTGTTCTTCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTG
ACGCAAAAGGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAAAACTAA
AGCAAGCTTTCTAGACCAT
BO07746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 738 | CG7188-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
BI-1-RB | 714 | CG7188-PB | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-RA | 1107 | CG7188-RA | 179..913 | 17..751 | 3675 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 179..871 | 17..709 | 3465 | 100 | Plus |
BI-1-RB | 1247 | CG7188-RB | 1007..1053 | 705..751 | 220 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8308092..8308545 | 538..85 | 2270 | 100 | Minus |
3L | 28110227 | 3L | 8307793..8307965 | 710..538 | 865 | 100 | Minus |
3L | 28110227 | 3L | 8308696..8308763 | 84..17 | 340 | 100 | Minus |
3L | 28110227 | 3L | 8307339..8307382 | 751..708 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:03:03 has no hits.
BO07746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:49 Download gff for
BO07746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-RA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:45 Download gff for
BO07746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-RA | 192..944 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:40 Download gff for
BO07746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 179..913 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:50 Download gff for
BO07746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7188-RA | 192..944 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:22 Download gff for
BO07746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BI-1-RA | 179..913 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:22 Download gff for
BO07746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8307794..8307964 | 539..709 | 100 | <- | Minus |
3L | 8307337..8307380 | 710..753 | 95 | <- | Minus |
3L | 8308092..8308545 | 85..538 | 100 | <- | Minus |
3L | 8308696..8308763 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:40 Download gff for
BO07746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8300437..8300480 | 710..753 | 95 | <- | Minus |
arm_3L | 8300894..8301064 | 539..709 | 100 | <- | Minus |
arm_3L | 8301192..8301645 | 85..538 | 100 | <- | Minus |
arm_3L | 8301796..8301863 | 17..84 | 100 | | Minus |
BO07746.pep Sequence
Translation from 16 to 769
> BO07746.pep
MADTANYINDRFQTFMNGLGDRYEPYVREHLSKVYMVLGSTAAATAMGAM
LQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNYYTRLGMLYAFGFCSGQ
TLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGML
VSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCR
NGNRDVVQHALDLFFDVLSMFRRLLIILTQKEERKQNERRQNKTKASFLD
H
BO07746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BI-1-PA | 245 | CG7188-PA | 1..245 | 1..245 | 1239 | 100 | Plus |
BI-1-PB | 237 | CG7188-PB | 1..231 | 1..231 | 1167 | 100 | Plus |
CG1287-PA | 365 | CG1287-PA | 139..364 | 26..235 | 166 | 27.3 | Plus |