Clone Sequence Records
BO07748.3prime Sequence
860 bp (859 high quality bases) assembled on 2006-01-06
> BO07748.3prime
ATGGTCTAGAAAGCTTGCGCAACCAATGGCCTGCAAGTAGCCCTGGATCT
GCTCATTCAGTGCATGACCAAATCCCTTGCCGCTGGCCGTGGACTTCTTG
TAGAGAGCGGCCACGAGGAGGATCTGCCCGGTCATCAGCAGTTCTCGTTT
TCCATAGCTCAGCCAGCCTTTGGTTTTCACTTGGGAGTCAAGAAGTACAC
GCTCATCCAAGGGCTCACGAATCGCTCGTCTGGAAAGCTCGCGTTGAACA
TGATCACGGTCTACTCGTTCCTCACGGCGCTGTACTCGGCGTTCTCGGCG
AAGATCTTCCCTTTGATTATCTCGCTCTTCCCTGCGAAGATCAACTCTTC
GAAAATCAACCCGCTCCTCGTCTCGTTCTTCTCTTCGCAGACCATCGCGC
TCGACTCGACGTGTGTCTTCTCGCTCCTCGCGAGATGTGTCTACTCGGTC
CTCACGACGTGTGTCTTCTCGCTCCTCTCGCCGCTCATTAGTACGGAACT
CTTCCCCATTTACTCGCCGTTGTATTTCTCTTCGCTCAACTCGTCGGGAA
TCTTCGCGTTCTACTTCCTCTTCGACACGCTCCATTCTGCGCTCTGCTAC
ACGTTCCTCGGTACGTTCAGCTTGACGGTCTTCCCTGCGGCTAATACTGT
TTTCAATCCTTCGTCCCTCATCTCGAGCACCGTCGTCTACCACCACTCGT
CGCAAGTCGATTCGACGGAAGGATTCTTGCTCTGCACGGCGAACGTCTTC
ATTCGCTTCTCGGCGGTGGTTGACCCTGTCGAGATCTTCATCTTGGTCCG
CACGCCTAGCTGAGTTCCGCTCTTCCCGTCGCTCTACGCTGCGTTCATTG
TCGCGCTCTT
BO07748.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-PA | 1953 | CG12239-RA | 1109..1950 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 2343 | CG12239-RA | 1211..2052 | 860..19 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5793350..5794142 | 860..68 | 3965 | 100 | Minus |
X | 23542271 | X | 5794203..5794252 | 68..19 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:17:28 has no hits.
BO07748.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:01 Download gff for
BO07748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1109..1953 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:08 Download gff for
BO07748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1109..1953 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:21 Download gff for
BO07748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 1211..2052 | 19..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:27 Download gff for
BO07748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 1211..2052 | 19..860 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:27 Download gff for
BO07748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5793350..5794142 | 68..860 | 100 | -> | Minus |
X | 5794204..5794252 | 19..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:21 Download gff for
BO07748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5687383..5688175 | 68..860 | 100 | -> | Minus |
arm_X | 5688237..5688285 | 19..67 | 100 | | Minus |
BO07748.5prime Sequence
759 bp (755 high quality bases) assembled on 2006-01-06
> BO07748.5prime
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGA
BO07748.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-PA | 1953 | CG12239-RA | 1..743 | 17..759 | 3715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 2343 | CG12239-RA | 103..845 | 17..759 | 3715 | 100 | Plus |
CG12239-RA | 2343 | CG12239-RA | 390..499 | 415..524 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 501..610 | 304..413 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 565..642 | 509..586 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 595..672 | 479..556 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 509..612 | 483..586 | 190 | 78.8 | Plus |
CG12239-RA | 2343 | CG12239-RA | 569..672 | 423..526 | 190 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5792242..5792984 | 17..759 | 3715 | 100 | Plus |
X | 23542271 | X | 5792529..5792638 | 415..524 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792640..5792749 | 304..413 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792704..5792781 | 509..586 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792734..5792811 | 479..556 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792648..5792751 | 483..586 | 190 | 78.8 | Plus |
X | 23542271 | X | 5792708..5792811 | 423..526 | 190 | 78.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:35:16 has no hits.
BO07748.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:02 Download gff for
BO07748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1..742 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:09 Download gff for
BO07748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-PA | 1..742 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:45 Download gff for
BO07748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 98..844 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:01 Download gff for
BO07748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 98..844 | 9..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:01 Download gff for
BO07748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5792237..5792983 | 9..758 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:45 Download gff for
BO07748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5686270..5687016 | 9..758 | 99 | | Plus |
BO07748.complete Sequence
1984 bp (1984 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630918
> BO07748.complete
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGAAGGACAACGAGATACTCGTAAGATGGAGCGACGTGGGGAGC
GCGAATCGGACAGGCGTGACTTCGAAACTCGGCGACTAGCGGCGAACGAA
AGACGAGTTGAACGCCGAGTAGAACGCGAAATGTCCAGACGTGAGGAACG
CATTAATCGCCGTGACGATCGAACTAGTCTAGACATGGATTTGTCCCGAC
GCATGGAACGTGAACAGACTGAGCGAGACTCTGAGGAACGCATCGAGAGC
GACAATCATCGACGAGCAGAAGATCGACGTGTTGAACGACGCGAAGAGCG
AGAGAACCGAGTTCGATTTGTTTTTGATGTTAGGTCTGACGAAGACAACT
CTCGACGAAGCGAAGTCCGGAAGGAAGAGCGCGACAATGAACGCAGCGTA
GAGCGACGGGAAGAGCGGAACTCAGCTAGGCGTGCGGACCAAGATGAAGA
TCTCGACAGGGTCAACCACCGCCGAGAAGCGAATGAAGACGTTCGCCGTG
CAGAGCAAGAATCCTTCCGTCGAATCGACTTGCGACGAGTGGTGGTAGAC
GACGGTGCTCGAGATGAGGGACGAAGGATTGAAAACAGTATTAGCCGCAG
GGAAGACCGTCAAGCTGAACGTACCGAGGAACGTGTAGCAGAGCGCAGAA
TGGAGCGTGTCGAAGAGGAAGTAGAACGCGAAGATTCCCGACGAGTTGAG
CGAAGAGAAATACAACGGCGAGTAAATGGGGAAGAGTTCCGTACTAATGA
GCGGCGAGAGGAGCGAGAAGACACACGTCGTGAGGACCGAGTAGACACAT
CTCGCGAGGAGCGAGAAGACACACGTCGAGTCGAGCGCGATGGTCTGCGA
AGAGAAGAACGAGACGAGGAGCGGGTTGATTTTCGAAGAGTTGATCTTCG
CAGGGAAGAGCGAGATAATCAAAGGGAAGATCTTCGCCGAGAACGCCGAG
TACAGCGCCGTGAGGAACGAGTAGACCGTGATCATGTTCAACGCGAGCTT
TCCAGACGAGCGATTCGTGAGCCCTTGGATGAGCGTGTACTTCTTGACTC
CCAAGTGAAAACCAAAGGCTGGCTGAGCTATGGAAAACGAGAACTGCTGA
TGACCGGGCAGATCCTCCTCGTGGCCGCTCTCTACAAGAAGTCCACGGCC
AGCGGCAAGGGATTTGGTCATGCACTGAATGAGCAGATCCAGGGCTACTT
GCAGGCCATTGGTTGCGCAAGCTTTCTAGACCAT
BO07748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 1953 | CG12239-PA | 1..1950 | 17..1966 | 9750 | 100 | Plus |
CG12239-RA | 1953 | CG12239-PA | 288..397 | 415..524 | 295 | 84.5 | Plus |
CG12239-RA | 1953 | CG12239-PA | 399..508 | 304..413 | 295 | 84.5 | Plus |
CG12239-RA | 1953 | CG12239-PA | 463..540 | 509..586 | 270 | 89.7 | Plus |
CG12239-RA | 1953 | CG12239-PA | 493..570 | 479..556 | 270 | 89.7 | Plus |
CG12239-RA | 1953 | CG12239-PA | 407..510 | 483..586 | 190 | 78.8 | Plus |
CG12239-RA | 1953 | CG12239-PA | 467..570 | 423..526 | 190 | 78.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 2343 | CG12239-RA | 103..2052 | 17..1966 | 9750 | 100 | Plus |
CG12239-RA | 2343 | CG12239-RA | 390..499 | 415..524 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 501..610 | 304..413 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 565..642 | 509..586 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 595..672 | 479..556 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 509..612 | 483..586 | 190 | 78.8 | Plus |
CG12239-RA | 2343 | CG12239-RA | 569..672 | 423..526 | 190 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5792242..5794142 | 17..1917 | 9505 | 100 | Plus |
X | 23542271 | X | 5792529..5792638 | 415..524 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792640..5792749 | 304..413 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792704..5792781 | 509..586 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792734..5792811 | 479..556 | 270 | 89.7 | Plus |
X | 23542271 | X | 5794203..5794252 | 1917..1966 | 250 | 100 | Plus |
X | 23542271 | X | 5792648..5792751 | 483..586 | 190 | 78.8 | Plus |
X | 23542271 | X | 5792708..5792811 | 423..526 | 190 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:42:54 has no hits.
BO07748.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:15 Download gff for
BO07748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 1..1953 | 17..1967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:01 Download gff for
BO07748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 91..2045 | 9..1966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:26 Download gff for
BO07748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 103..2052 | 17..1968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:15 Download gff for
BO07748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 91..2045 | 9..1966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:06 Download gff for
BO07748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 103..2052 | 17..1968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:06 Download gff for
BO07748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5792242..5794142 | 17..1917 | 100 | -> | Plus |
X | 5794204..5794252 | 1918..1968 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:26 Download gff for
BO07748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5686275..5688175 | 17..1917 | 100 | -> | Plus |
arm_X | 5688237..5688285 | 1918..1968 | 96 | | Plus |
BO07748.pep Sequence
Translation from 16 to 1984
> BO07748.pep
MMRQRLSVLLLLLHLGCLTLAWASSRHFCGDTSGRDICNDGRWDGHQRQD
DYDEHMVYRQGAAESQRRDRVDSVARDDRGKERREETRVRLDSSLRLEAR
EARNERRETREERVQPRETREVRVDRRAAREDQLDAREARDERREAREER
VQALETREARVDRRESREDREDRRESRADREDRRESREDRLEGREARVQR
VEQREARDNQVELREIREIREHRRVTPEERVEQRGIREDRVERHEADEGQ
RDTRKMERRGERESDRRDFETRRLAANERRVERRVEREMSRREERINRRD
DRTSLDMDLSRRMEREQTERDSEERIESDNHRRAEDRRVERREERENRVR
FVFDVRSDEDNSRRSEVRKEERDNERSVERREERNSARRADQDEDLDRVN
HRREANEDVRRAEQESFRRIDLRRVVVDDGARDEGRRIENSISRREDRQA
ERTEERVAERRMERVEEEVEREDSRRVERREIQRRVNGEEFRTNERREER
EDTRREDRVDTSREEREDTRRVERDGLRREERDEERVDFRRVDLRREERD
NQREDLRRERRVQRREERVDRDHVQRELSRRAIREPLDERVLLDSQVKTK
GWLSYGKRELLMTGQILLVAALYKKSTASGKGFGHALNEQIQGYLQAIGC
ASFLDH
BO07748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-PA | 650 | CG12239-PA | 1..650 | 1..650 | 3282 | 100 | Plus |
CG2839-PA | 826 | CG2839-PA | 266..742 | 86..581 | 533 | 28.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 263..753 | 101..604 | 522 | 29 | Plus |
CG2839-PA | 826 | CG2839-PA | 276..743 | 64..577 | 519 | 29.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 227..737 | 97..600 | 514 | 28.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 286..748 | 59..554 | 500 | 29 | Plus |
CG2839-PA | 826 | CG2839-PA | 347..772 | 47..500 | 425 | 27.4 | Plus |
eIF3-S10-PD | 1140 | CG9805-PD | 479..1078 | 42..572 | 319 | 23.5 | Plus |
eIF3-S10-PA | 1140 | CG9805-PA | 479..1078 | 42..572 | 319 | 23.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 430..744 | 42..383 | 318 | 28.6 | Plus |
rgn-PD | 800 | CG6014-PD | 231..789 | 39..580 | 310 | 22.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 478..794 | 64..370 | 280 | 23.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 484..792 | 64..384 | 265 | 25.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 500..749 | 42..299 | 228 | 27.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 526..749 | 40..279 | 200 | 24.2 | Plus |
eIF3-S10-PD | 1140 | CG9805-PD | 502..889 | 181..588 | 176 | 20.6 | Plus |
eIF3-S10-PA | 1140 | CG9805-PA | 502..889 | 181..588 | 176 | 20.6 | Plus |