Clone BO07748 Report

Search the DGRC for BO07748

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG12239-RA
Protein status:BO07748.pep: validated full length
Sequenced Size:1984

Clone Sequence Records

BO07748.3prime Sequence

860 bp (859 high quality bases) assembled on 2006-01-06

> BO07748.3prime
ATGGTCTAGAAAGCTTGCGCAACCAATGGCCTGCAAGTAGCCCTGGATCT
GCTCATTCAGTGCATGACCAAATCCCTTGCCGCTGGCCGTGGACTTCTTG
TAGAGAGCGGCCACGAGGAGGATCTGCCCGGTCATCAGCAGTTCTCGTTT
TCCATAGCTCAGCCAGCCTTTGGTTTTCACTTGGGAGTCAAGAAGTACAC
GCTCATCCAAGGGCTCACGAATCGCTCGTCTGGAAAGCTCGCGTTGAACA
TGATCACGGTCTACTCGTTCCTCACGGCGCTGTACTCGGCGTTCTCGGCG
AAGATCTTCCCTTTGATTATCTCGCTCTTCCCTGCGAAGATCAACTCTTC
GAAAATCAACCCGCTCCTCGTCTCGTTCTTCTCTTCGCAGACCATCGCGC
TCGACTCGACGTGTGTCTTCTCGCTCCTCGCGAGATGTGTCTACTCGGTC
CTCACGACGTGTGTCTTCTCGCTCCTCTCGCCGCTCATTAGTACGGAACT
CTTCCCCATTTACTCGCCGTTGTATTTCTCTTCGCTCAACTCGTCGGGAA
TCTTCGCGTTCTACTTCCTCTTCGACACGCTCCATTCTGCGCTCTGCTAC
ACGTTCCTCGGTACGTTCAGCTTGACGGTCTTCCCTGCGGCTAATACTGT
TTTCAATCCTTCGTCCCTCATCTCGAGCACCGTCGTCTACCACCACTCGT
CGCAAGTCGATTCGACGGAAGGATTCTTGCTCTGCACGGCGAACGTCTTC
ATTCGCTTCTCGGCGGTGGTTGACCCTGTCGAGATCTTCATCTTGGTCCG
CACGCCTAGCTGAGTTCCGCTCTTCCCGTCGCTCTACGCTGCGTTCATTG
TCGCGCTCTT

BO07748.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-PA 1953 CG12239-RA 1109..1950 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 2343 CG12239-RA 1211..2052 860..19 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5793350..5794142 860..68 3965 100 Minus
X 23542271 X 5794203..5794252 68..19 250 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:17:28 has no hits.

BO07748.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:01 Download gff for BO07748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1109..1953 18..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:08 Download gff for BO07748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1109..1953 18..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:21 Download gff for BO07748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 1211..2052 19..860 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:27 Download gff for BO07748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 1211..2052 19..860 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:27 Download gff for BO07748.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5793350..5794142 68..860 100 -> Minus
X 5794204..5794252 19..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:21 Download gff for BO07748.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5687383..5688175 68..860 100 -> Minus
arm_X 5688237..5688285 19..67 100   Minus

BO07748.5prime Sequence

759 bp (755 high quality bases) assembled on 2006-01-06

> BO07748.5prime
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGA

BO07748.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-PA 1953 CG12239-RA 1..743 17..759 3715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 2343 CG12239-RA 103..845 17..759 3715 100 Plus
CG12239-RA 2343 CG12239-RA 390..499 415..524 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 501..610 304..413 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 565..642 509..586 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 595..672 479..556 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 509..612 483..586 190 78.8 Plus
CG12239-RA 2343 CG12239-RA 569..672 423..526 190 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5792242..5792984 17..759 3715 100 Plus
X 23542271 X 5792529..5792638 415..524 295 84.5 Plus
X 23542271 X 5792640..5792749 304..413 295 84.5 Plus
X 23542271 X 5792704..5792781 509..586 270 89.7 Plus
X 23542271 X 5792734..5792811 479..556 270 89.7 Plus
X 23542271 X 5792648..5792751 483..586 190 78.8 Plus
X 23542271 X 5792708..5792811 423..526 190 78.8 Plus
Blast to na_te.dros performed on 2015-02-13 05:35:16 has no hits.

BO07748.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:02 Download gff for BO07748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1..742 17..758 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:09 Download gff for BO07748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-PA 1..742 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:45 Download gff for BO07748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 98..844 9..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:01 Download gff for BO07748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 98..844 9..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:01 Download gff for BO07748.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5792237..5792983 9..758 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:45 Download gff for BO07748.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5686270..5687016 9..758 99   Plus

BO07748.complete Sequence

1984 bp (1984 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630918

> BO07748.complete
GAAGTTATCAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTC
TGCTCCACCTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTC
TGTGGCGACACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGG
CCATCAGCGCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCG
CGGCGGAGAGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGAT
CGCGGCAAGGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCT
GCGACTTGAGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAG
AGCGTGTACAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCA
GCTCGTGAAGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGA
AGCTCGGGAAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGG
ACCGACGTGAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCA
GATCGAGAAGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGA
AGCTCGCGTCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTG
AGCTCCGTGAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAA
GAACGAGTCGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGA
AGCTGACGAAGGACAACGAGATACTCGTAAGATGGAGCGACGTGGGGAGC
GCGAATCGGACAGGCGTGACTTCGAAACTCGGCGACTAGCGGCGAACGAA
AGACGAGTTGAACGCCGAGTAGAACGCGAAATGTCCAGACGTGAGGAACG
CATTAATCGCCGTGACGATCGAACTAGTCTAGACATGGATTTGTCCCGAC
GCATGGAACGTGAACAGACTGAGCGAGACTCTGAGGAACGCATCGAGAGC
GACAATCATCGACGAGCAGAAGATCGACGTGTTGAACGACGCGAAGAGCG
AGAGAACCGAGTTCGATTTGTTTTTGATGTTAGGTCTGACGAAGACAACT
CTCGACGAAGCGAAGTCCGGAAGGAAGAGCGCGACAATGAACGCAGCGTA
GAGCGACGGGAAGAGCGGAACTCAGCTAGGCGTGCGGACCAAGATGAAGA
TCTCGACAGGGTCAACCACCGCCGAGAAGCGAATGAAGACGTTCGCCGTG
CAGAGCAAGAATCCTTCCGTCGAATCGACTTGCGACGAGTGGTGGTAGAC
GACGGTGCTCGAGATGAGGGACGAAGGATTGAAAACAGTATTAGCCGCAG
GGAAGACCGTCAAGCTGAACGTACCGAGGAACGTGTAGCAGAGCGCAGAA
TGGAGCGTGTCGAAGAGGAAGTAGAACGCGAAGATTCCCGACGAGTTGAG
CGAAGAGAAATACAACGGCGAGTAAATGGGGAAGAGTTCCGTACTAATGA
GCGGCGAGAGGAGCGAGAAGACACACGTCGTGAGGACCGAGTAGACACAT
CTCGCGAGGAGCGAGAAGACACACGTCGAGTCGAGCGCGATGGTCTGCGA
AGAGAAGAACGAGACGAGGAGCGGGTTGATTTTCGAAGAGTTGATCTTCG
CAGGGAAGAGCGAGATAATCAAAGGGAAGATCTTCGCCGAGAACGCCGAG
TACAGCGCCGTGAGGAACGAGTAGACCGTGATCATGTTCAACGCGAGCTT
TCCAGACGAGCGATTCGTGAGCCCTTGGATGAGCGTGTACTTCTTGACTC
CCAAGTGAAAACCAAAGGCTGGCTGAGCTATGGAAAACGAGAACTGCTGA
TGACCGGGCAGATCCTCCTCGTGGCCGCTCTCTACAAGAAGTCCACGGCC
AGCGGCAAGGGATTTGGTCATGCACTGAATGAGCAGATCCAGGGCTACTT
GCAGGCCATTGGTTGCGCAAGCTTTCTAGACCAT

BO07748.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 1953 CG12239-PA 1..1950 17..1966 9750 100 Plus
CG12239-RA 1953 CG12239-PA 288..397 415..524 295 84.5 Plus
CG12239-RA 1953 CG12239-PA 399..508 304..413 295 84.5 Plus
CG12239-RA 1953 CG12239-PA 463..540 509..586 270 89.7 Plus
CG12239-RA 1953 CG12239-PA 493..570 479..556 270 89.7 Plus
CG12239-RA 1953 CG12239-PA 407..510 483..586 190 78.8 Plus
CG12239-RA 1953 CG12239-PA 467..570 423..526 190 78.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 2343 CG12239-RA 103..2052 17..1966 9750 100 Plus
CG12239-RA 2343 CG12239-RA 390..499 415..524 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 501..610 304..413 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 565..642 509..586 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 595..672 479..556 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 509..612 483..586 190 78.8 Plus
CG12239-RA 2343 CG12239-RA 569..672 423..526 190 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5792242..5794142 17..1917 9505 100 Plus
X 23542271 X 5792529..5792638 415..524 295 84.5 Plus
X 23542271 X 5792640..5792749 304..413 295 84.5 Plus
X 23542271 X 5792704..5792781 509..586 270 89.7 Plus
X 23542271 X 5792734..5792811 479..556 270 89.7 Plus
X 23542271 X 5794203..5794252 1917..1966 250 100 Plus
X 23542271 X 5792648..5792751 483..586 190 78.8 Plus
X 23542271 X 5792708..5792811 423..526 190 78.8 Plus
Blast to na_te.dros performed on 2014-11-27 16:42:54 has no hits.

BO07748.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:15 Download gff for BO07748.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 1..1953 17..1967 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:01 Download gff for BO07748.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 91..2045 9..1966 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:26 Download gff for BO07748.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 103..2052 17..1968 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:15 Download gff for BO07748.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 91..2045 9..1966 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:06 Download gff for BO07748.complete
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 103..2052 17..1968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:06 Download gff for BO07748.complete
Subject Subject Range Query Range Percent Splice Strand
X 5792242..5794142 17..1917 100 -> Plus
X 5794204..5794252 1918..1968 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:26 Download gff for BO07748.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5686275..5688175 17..1917 100 -> Plus
arm_X 5688237..5688285 1918..1968 96   Plus

BO07748.pep Sequence

Translation from 16 to 1984

> BO07748.pep
MMRQRLSVLLLLLHLGCLTLAWASSRHFCGDTSGRDICNDGRWDGHQRQD
DYDEHMVYRQGAAESQRRDRVDSVARDDRGKERREETRVRLDSSLRLEAR
EARNERRETREERVQPRETREVRVDRRAAREDQLDAREARDERREAREER
VQALETREARVDRRESREDREDRRESRADREDRRESREDRLEGREARVQR
VEQREARDNQVELREIREIREHRRVTPEERVEQRGIREDRVERHEADEGQ
RDTRKMERRGERESDRRDFETRRLAANERRVERRVEREMSRREERINRRD
DRTSLDMDLSRRMEREQTERDSEERIESDNHRRAEDRRVERREERENRVR
FVFDVRSDEDNSRRSEVRKEERDNERSVERREERNSARRADQDEDLDRVN
HRREANEDVRRAEQESFRRIDLRRVVVDDGARDEGRRIENSISRREDRQA
ERTEERVAERRMERVEEEVEREDSRRVERREIQRRVNGEEFRTNERREER
EDTRREDRVDTSREEREDTRRVERDGLRREERDEERVDFRRVDLRREERD
NQREDLRRERRVQRREERVDRDHVQRELSRRAIREPLDERVLLDSQVKTK
GWLSYGKRELLMTGQILLVAALYKKSTASGKGFGHALNEQIQGYLQAIGC
ASFLDH

BO07748.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-PA 650 CG12239-PA 1..650 1..650 3282 100 Plus
CG2839-PA 826 CG2839-PA 266..742 86..581 533 28.5 Plus
CG2839-PA 826 CG2839-PA 263..753 101..604 522 29 Plus
CG2839-PA 826 CG2839-PA 276..743 64..577 519 29.7 Plus
CG2839-PA 826 CG2839-PA 227..737 97..600 514 28.7 Plus
CG2839-PA 826 CG2839-PA 286..748 59..554 500 29 Plus
CG2839-PA 826 CG2839-PA 347..772 47..500 425 27.4 Plus
eIF3-S10-PD 1140 CG9805-PD 479..1078 42..572 319 23.5 Plus
eIF3-S10-PA 1140 CG9805-PA 479..1078 42..572 319 23.5 Plus
CG2839-PA 826 CG2839-PA 430..744 42..383 318 28.6 Plus
rgn-PD 800 CG6014-PD 231..789 39..580 310 22.9 Plus
CG2839-PA 826 CG2839-PA 478..794 64..370 280 23.8 Plus
CG2839-PA 826 CG2839-PA 484..792 64..384 265 25.1 Plus
CG2839-PA 826 CG2839-PA 500..749 42..299 228 27.2 Plus
CG2839-PA 826 CG2839-PA 526..749 40..279 200 24.2 Plus
eIF3-S10-PD 1140 CG9805-PD 502..889 181..588 176 20.6 Plus
eIF3-S10-PA 1140 CG9805-PA 502..889 181..588 176 20.6 Plus