Clone BO07750 Report

Search the DGRC for BO07750

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptdaw-RA
Protein status:BO07750.pep: validated full length
Sequenced Size:1792

Clone Sequence Records

BO07750.3prime Sequence

933 bp (871 high quality bases) assembled on 2006-01-06

> BO07750.3prime
ATGGTCTAGAAAGCTTGCTCTGCAGCCACATGACTCCACCACCATGTTGG
GCAGCGTCTTCACCGTCGCCGTGTTGCTCGAGTCCATCACGACCAGCTGC
AGCGAGGAATACTGTTTGGCGGTGCAGCAGGGCACCAACTCCAGCGACTT
GTTAGCACCGCTCGTGGAGAGAATTTTCATTATGGAACTGTGGTGGGAGG
CCGCTTGCGTAACACTCGCCACCGAGCTACAGGATCCGCGACAGAAGTAG
GCATTGTAGCCCTCCGGCTTCAGGATCCAGTTGCTCCAGCCGATGTCCCG
GAATGATATGTACAGGTGCTCCCGACAGCACTCGGTCATTCCGCTGGAGC
AGTTGATGCTGCGCTTCTGGCGACTCTTGCGCCGCCTGTTCTGCATGTCG
ATCACGATGAATGGCCGGTAATCCTTGTCCACCGAAATGATCTCCTCCAT
GTCGCTGACATCGCAGCCACCGCAGGTGATTTGGATGAGGTGGCTCAGCT
CGTGGCCACTGATCCAGTGTTTGATGGGCCACTCAATGTCGATCTTCATC
CACTCATCTTGCACATTCACCGACTGGATGGCTATGGTCTTGGCCGCCGA
CAAATACTTGGAGTCCTTCTGCTGATCCACCTCCACCTCGGAGACTACGA
TCGTCTGCTGGGCACTGGTGCTGTTCACCGATGCCGTGTCGGTGCGGTTC
TGTTTGTTCTTGAAGAGCCACAGGACGGCGGTGCTCACGTCGAAGCCCTC
GGCATCTGCGTCGTCTATCTTGAAGGTGAAGCACATGGACGGATTGGATT
TTCCATCTCTCGCTCGGTTGCACTCGACCTCCTCTCTATTGAGCAGTATG
AACTTCTTGCTAGTGCGAGCGTAGTAATCGTCCAGCTCCTTGTTCTTGGT
GCTATCGTCCGGATGGGAGAGTGTCATCCCGTC

BO07750.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16987-PB 1761 Alp23B-RB 844..1758 933..19 4575 100 Minus
CG16987-PA 1761 Alp23B-RA 844..1758 933..19 4575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 3050 CG16987-RC 1516..2430 933..19 4575 100 Minus
daw-RA 2693 CG16987-RA 1390..2304 933..19 4575 100 Minus
daw-RB 2819 CG16987-RB 1516..2430 933..19 4575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2811147..2811528 559..178 1910 100 Minus
2L 23513712 2L 2810366..2810643 835..558 1390 100 Minus
2L 23513712 2L 2811597..2811756 178..19 800 100 Minus
2L 23513712 2L 2810154..2810253 933..834 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:16:26 has no hits.

BO07750.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:05 Download gff for BO07750.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 844..1761 18..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:13 Download gff for BO07750.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 844..1761 18..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:38 Download gff for BO07750.3prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 1516..2430 19..933 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:46 Download gff for BO07750.3prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 1516..2430 19..933 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:46 Download gff for BO07750.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2810154..2810253 834..933 100 -> Minus
2L 2810368..2810643 558..833 100 -> Minus
2L 2811149..2811528 178..557 100 -> Minus
2L 2811598..2811756 19..177 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:38 Download gff for BO07750.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2810154..2810253 834..933 100 -> Minus
arm_2L 2810368..2810643 558..833 100 -> Minus
arm_2L 2811149..2811528 178..557 100 -> Minus
arm_2L 2811598..2811756 19..177 100   Minus

BO07750.5prime Sequence

897 bp (796 high quality bases) assembled on 2006-01-06

> BO07750.5prime
GAAGTTATCAGTCGACATGGCCAAGTACTTTATAGCCCTGGTGTTGCTGG
TGTGTCTGGCCCTGGAGAACAGGAACGTATACAATCGCCTGCACGCCCGC
TCCCATCCGAGTTCCCGTGGCGACATCCTTCGTCCGCATCCTAAGCACCA
GCCGCATCCCCATGTGCAGCACACCTCGCAACAGCTGCAGCAGCAACACC
ATATCCGGCAGCAACGATCCCGTCAGCTGAAACACCTGGAACCGGATCCG
ACCAGCGAGGAGGACGATGTACCGATCACCAAGCGGGAGTACTATGCCCG
CCTGAGGCGCCACGTCATCCACAAGAGGCAGCACCTCCTGCAGCAGGAGC
TCAGCTACAACCATCCCGGCTCCCATTCGGAGCAGCTAAAGGTGCCCCGC
CTGTGGCAACACCTCATGGAGCAGGAGGAGAAGGCACACCGACATGTGAG
CCCGCCCGTGGAGTTGCCTATCATGTACGGAGATGCCCCCGAGGAGTCAT
CCCTCTCCTCCGATGATCACTTTGATGATCTGTCGCCGCTGGACTTTGTG
CGCAACGAACTGATGGCCGAGGACCAGCAGAATCAGGAGAAGGATCTCGA
TCTCGATCTGGACCTAGATCAGCAGCCGGAAACGCCCATAGAGCCAGAGC
TCCCATTGGGTGAGAGGAACATCACCATTTCGGTGAAGTCCAGCGCCGGA
GGATGCCCCAAGTGCGAGAGCAATCGCCAAGTGGAGCACATCACCGAGGA
GCAGCTGACCCACTTACGCATCGAGTTCGTTAAGCAGCAGATCCTGGAGA
AGCTGCGCCTCAAGGAGAGCCCCCAGGTGTCGGCCGTGGAGCTGCCCAAG
CCCATCTTCGACGGGATGACACTCTCCCATCCGGACGATAGCACAAG

BO07750.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16987-PB 1761 Alp23B-RB 1..878 17..894 4365 99.8 Plus
CG16987-PA 1761 Alp23B-RA 1..878 17..894 4365 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 3050 CG16987-RC 673..1550 17..894 4375 99.9 Plus
daw-RA 2693 CG16987-RA 547..1424 17..894 4375 99.9 Plus
daw-RB 2819 CG16987-RB 673..1550 17..894 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2809311..2810188 17..894 4375 99.9 Plus
Blast to na_te.dros performed 2015-02-11 02:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6924 147..356 173 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6865 134..255 173 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2608 99..444 169 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2595..2898 143..451 162 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2416..2514 144..242 161 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6839 134..248 161 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6899 134..236 157 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6886 134..258 149 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2480 134..250 143 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2987 143..363 137 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..7100 144..452 127 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1085..1167 134..216 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6908 178..361 121 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1510..1587 159..236 120 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2895 146..238 118 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1505..1591 135..219 115 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1061..1142 134..215 113 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6854..6925 134..205 108 61.1 Plus

BO07750.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:06 Download gff for BO07750.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:14 Download gff for BO07750.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16987-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:16 Download gff for BO07750.5prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 663..1554 7..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:38 Download gff for BO07750.5prime
Subject Subject Range Query Range Percent Splice Strand
daw-RB 663..1554 7..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:38 Download gff for BO07750.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2809301..2810192 7..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:16 Download gff for BO07750.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2809301..2810192 7..897 99   Plus

BO07750.complete Sequence

1792 bp (1792 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630920

> BO07750.complete
GAAGTTATCAGTCGACATGGCCAAGTACTTTATAGCCCTGGTGTTGCTGG
TGTGTCTGGCCCTGGAGAACAGGAACGTATACAATCGCCTGCACGCCCGC
TCCCATCCGAGTTCCCGTGGCGACATCCTTCGTCCGCATCCTAAGCACCA
GCCGCATCCCCATGTGCAGCACACCTCGCAACAGCTGCAGCAGCAACACC
ATATCCGGCAGCAACGATCCCGTCAGCTGAAACACCTGGAACCGGATCCG
ACCAGCGAGGAGGACGATGTACCGATCACCAAGCGGGAGTACTATGCCCG
CCTGAGGCGCCACGTCATCCACAAGAGGCAGCACCTCCTGCAGCAGGAGC
TCAGCTACAACCATCCCGGCTCCCATTCGGAGCAGCTAAAGGTGCCCCGC
CTGTGGCAACACCTCATGGAGCAGGAGGAGAAGGCACACCGACATGTGAG
CCCGCCCGTGGAGTTGCCTATCATGTACGGAGATGCCCCCGAGGAGTCAT
CCCTCTCCTCCGATGATCACTTTGATGATCTGTCGCCGCTGGACTTTGTG
CGCAACGAACTGATGGCCGAGGACCAGCAGAATCAGGAGAAGGATCTCGA
TCTCGATCTGGACCTAGATCAGCAGCCGGAAACGCCCATAGAGCCAGAGC
TCCCATTGGGTGAGAGGAACATCACCATTTCGGTGAAGTCCAGCGCCGGA
GGATGCCCCAAGTGCGAGAGCAATCGCCAAGTGGAGCACATCACCGAGGA
GCAGCTGACCCACTTACGCATCGAGTTCGTTAAGCAGCAGATCCTGGAGA
AGCTGCGCCTCAAGGAGAGCCCCAAGGTGTCGGCCGTGGAGCTGCCCAAG
CCCATCTTCGACGGGATGACACTCTCCCATCCGGACGATAGCACCAAGAA
CAAGGAGCTGGACGATTACTACGCTCGCACTAGCAAGAAGTTCATACTGC
TCAATAGAGAGGAGGTCGAGTGCAACCGAGCGAGAGATGGAAAATCCAAT
CCGTCCATGTGCTTCACCTTCAAGATAGACGACGCAGATGCCGAGGGCTT
CGACGTGAGCACCGCCGTCCTGTGGCTCTTCAAGAACAAACAGAACCGCA
CCGACACGGCATCGGTGAACAGCACCAGTGCCCAGCAGACGATCGTAGTC
TCCGAGGTGGAGGTGGATCAGCAGAAGGACTCCAAGTATTTGTCGGCGGC
CAAGACCATAGCCATCCAGTCGGTGAATGTGCAAGATGAGTGGATGAAGA
TCGACATTGAGTGGCCCATCAAACACTGGATCAGTGGCCACGAGCTGAGC
CACCTCATCCAAATCACCTGCGGTGGCTGCGATGTCAGCGACATGGAGGA
GATCATTTCGGTGGACAAGGATTACCGGCCATTCATCGTGATCGACATGC
AGAACAGGCGGCGCAAGAGTCGCCAGAAGCGCAGCATCAACTGCTCCAGC
GGAATGACCGAGTGCTGTCGGGAGCACCTGTACATATCATTCCGGGACAT
CGGCTGGAGCAACTGGATCCTGAAGCCGGAGGGCTACAATGCCTACTTCT
GTCGCGGATCCTGTAGCTCGGTGGCGAGTGTTACGCAAGCGGCCTCCCAC
CACAGTTCCATAATGAAAATTCTCTCCACGAGCGGTGCTAACAAGTCGCT
GGAGTTGGTGCCCTGCTGCACCGCCAAACAGTATTCCTCGCTGCAGCTGG
TCGTGATGGACTCGAGCAACACGGCGACGGTGAAGACGCTGCCCAACATG
GTGGTGGAGTCATGTGGCTGCAGAGCAAGCTTTCTAGACCAT

BO07750.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 1761 CG16987-PC 1..1758 17..1774 8790 100 Plus
daw-RA 1761 CG16987-PA 1..1758 17..1774 8790 100 Plus
daw-RB 1761 CG16987-PB 1..1758 17..1774 8790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
daw-RC 3050 CG16987-RC 673..2430 17..1774 8790 100 Plus
daw-RA 2693 CG16987-RA 547..2304 17..1774 8790 100 Plus
daw-RB 2819 CG16987-RB 673..2430 17..1774 8790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2809311..2810253 17..959 4715 100 Plus
2L 23513712 2L 2811147..2811528 1234..1615 1910 100 Plus
2L 23513712 2L 2810366..2810643 958..1235 1390 100 Plus
2L 23513712 2L 2811597..2811756 1615..1774 800 100 Plus
Blast to na_te.dros performed 2014-11-27 16:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6924 147..356 173 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6865 134..255 173 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2608 99..444 169 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2595..2898 143..451 162 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2416..2514 144..242 161 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6839 134..248 161 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6899 134..236 157 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6886 134..258 149 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2480 134..250 143 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2987 143..363 137 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..7100 144..452 127 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1085..1167 134..216 127 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6908 178..361 121 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1510..1587 159..236 120 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2895 146..238 118 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1505..1591 135..219 115 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1061..1142 134..215 113 59.8 Plus

BO07750.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:24 Download gff for BO07750.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RA 1..1761 17..1775 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:11 Download gff for BO07750.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RA 538..2305 7..1774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:54 Download gff for BO07750.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RB 673..2430 17..1776 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:24 Download gff for BO07750.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RA 538..2305 7..1774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:33 Download gff for BO07750.complete
Subject Subject Range Query Range Percent Splice Strand
daw-RB 673..2430 17..1776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:33 Download gff for BO07750.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2809311..2810253 17..959 100 -> Plus
2L 2810368..2810643 960..1235 100 -> Plus
2L 2811149..2811528 1236..1615 100 -> Plus
2L 2811598..2811756 1616..1776 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:54 Download gff for BO07750.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2809311..2810253 17..959 100 -> Plus
arm_2L 2810368..2810643 960..1235 100 -> Plus
arm_2L 2811149..2811528 1236..1615 100 -> Plus
arm_2L 2811598..2811756 1616..1776 98   Plus

BO07750.pep Sequence

Translation from 16 to 1792

> BO07750.pep
MAKYFIALVLLVCLALENRNVYNRLHARSHPSSRGDILRPHPKHQPHPHV
QHTSQQLQQQHHIRQQRSRQLKHLEPDPTSEEDDVPITKREYYARLRRHV
IHKRQHLLQQELSYNHPGSHSEQLKVPRLWQHLMEQEEKAHRHVSPPVEL
PIMYGDAPEESSLSSDDHFDDLSPLDFVRNELMAEDQQNQEKDLDLDLDL
DQQPETPIEPELPLGERNITISVKSSAGGCPKCESNRQVEHITEEQLTHL
RIEFVKQQILEKLRLKESPKVSAVELPKPIFDGMTLSHPDDSTKNKELDD
YYARTSKKFILLNREEVECNRARDGKSNPSMCFTFKIDDADAEGFDVSTA
VLWLFKNKQNRTDTASVNSTSAQQTIVVSEVEVDQQKDSKYLSAAKTIAI
QSVNVQDEWMKIDIEWPIKHWISGHELSHLIQITCGGCDVSDMEEIISVD
KDYRPFIVIDMQNRRRKSRQKRSINCSSGMTECCREHLYISFRDIGWSNW
ILKPEGYNAYFCRGSCSSVASVTQAASHHSSIMKILSTSGANKSLELVPC
CTAKQYSSLQLVVMDSSNTATVKTLPNMVVESCGCRASFLDH

BO07750.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
daw-PC 586 CG16987-PC 1..586 1..586 3093 100 Plus
daw-PA 586 CG16987-PA 1..586 1..586 3093 100 Plus
daw-PB 586 CG16987-PB 1..586 1..586 3093 100 Plus
Actbeta-PA 946 CG11062-PA 757..945 409..585 252 29.5 Plus
gbb-PB 455 CG5562-PB 64..454 255..585 219 20.8 Plus