Clone Sequence Records
BO07753.5prime Sequence
701 bp (700 high quality bases) assembled on 2006-01-06
> BO07753.5prime
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTGCAAGCTTTCTAGAC
C
BO07753.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9779-PA | 672 | CG9779-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 1114 | CG9779-RA | 116..785 | 16..685 | 3350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4309976..4310358 | 685..303 | 1915 | 100 | Minus |
3R | 32079331 | 3R | 4310414..4310656 | 302..60 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 4310785..4310832 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:43:53 has no hits.
BO07753.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:12 Download gff for
BO07753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:22 Download gff for
BO07753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:37 Download gff for
BO07753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps24-RA | 107..788 | 3..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:23 Download gff for
BO07753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps24-RA | 107..788 | 3..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:23 Download gff for
BO07753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4309972..4310358 | 303..689 | 99 | <- | Minus |
3R | 4310414..4310654 | 62..302 | 100 | <- | Minus |
3R | 4310787..4310841 | 3..61 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:37 Download gff for
BO07753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 135694..136080 | 303..689 | 99 | <- | Minus |
arm_3R | 136136..136376 | 62..302 | 100 | <- | Minus |
arm_3R | 136509..136563 | 3..61 | 91 | | Minus |
BO07753.3prime Sequence
701 bp (700 high quality bases) assembled on 2006-01-06
> BO07753.3prime
ATGGTCTAGAAAGCTTGCAGATCGCAGCGAGGCCAGGCGGCTTTGCATCT
CTTGCAGTTCCTCACCCTCCTCATCGTCCTGCTCAGCCTCGACGCGCGCA
GCAGACGCAGACGCCTTGTCCGCCGGTGTAGCCTCTGGAGGCAGGGGAGC
TTCCCCGAGCTTGCCATCTGTGATCTCCCACAAAACCTTGTCCACCTCCT
TGCTTGCCTCCTCCTCCAGCTCCTCGGACTCCTCCAGCGAGTCCATGGTC
TCGTCTAGCATCTCCTCAATAATGCCGGCCTTCATCATTTCCTTTGACAT
GTCGCGCATGATGCCTGCAAGCTCTGGATAGCGCACCAGGCTCTGCATAG
CTTGCAAGACCTCTGTAGACTTTTGCAGAGATCCAGCTACACGCAAGGTG
GATAGCTGATTTTTCATCTGCATCTGAATGGAGTTGAGGTGCGCCTTCGA
CGTATATATGCGGTTGATGGCCTTTCGCGCATTCACAATCTCCTTGGCAA
GAATGACGCAGGTGTCGCGGTCATTTTTCTGTGCTGCCTGTTTCAGCGAG
CGTTTTACTTTCTCTTCCTCGCGCTGGATACTTCGGATCTGGCGATCCAG
CTGGTTGCCCTCTTTCCGTATCTTATGCGTCCACTCCTGCACCTGCTCTT
TGGGATCTTTACTGGGAGTTCTGCCGAATAAGCCCATGTCGACTGATAAC
T
BO07753.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9779-PA | 672 | CG9779-RA | 1..669 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 1114 | CG9779-RA | 116..785 | 688..19 | 3350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4309976..4310358 | 19..401 | 1915 | 100 | Plus |
3R | 32079331 | 3R | 4310414..4310656 | 402..644 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 4310785..4310832 | 641..688 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:57:47 has no hits.
BO07753.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:11 Download gff for
BO07753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 15..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:21 Download gff for
BO07753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-PA | 1..672 | 15..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:19 Download gff for
BO07753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps24-RA | 107..788 | 15..701 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:50 Download gff for
BO07753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps24-RA | 107..788 | 15..701 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:50 Download gff for
BO07753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4309972..4310358 | 15..401 | 99 | <- | Plus |
3R | 4310414..4310654 | 402..642 | 100 | <- | Plus |
3R | 4310787..4310841 | 643..701 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:19 Download gff for
BO07753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 135694..136080 | 15..401 | 99 | <- | Plus |
arm_3R | 136136..136376 | 402..642 | 100 | <- | Plus |
arm_3R | 136509..136563 | 643..701 | 91 | | Plus |
BO07753.complete Sequence
703 bp (703 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630921
> BO07753.complete
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTGCAAGCTTTCTAGAC
CAT
BO07753.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 672 | CG9779-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-RA | 1114 | CG9779-RA | 116..785 | 16..685 | 3350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4309976..4310358 | 685..303 | 1915 | 100 | Minus |
3R | 32079331 | 3R | 4310414..4310656 | 302..60 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 4310785..4310832 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:56:08 has no hits.
BO07753.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:51 Download gff for
BO07753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-RA | 1..672 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:29 Download gff for
BO07753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-RA | 105..786 | 3..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:22 Download gff for
BO07753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps24-RA | 117..785 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:51 Download gff for
BO07753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9779-RA | 105..786 | 3..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:10 Download gff for
BO07753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps24-RA | 117..785 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:10 Download gff for
BO07753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4310414..4310654 | 62..302 | 100 | <- | Minus |
3R | 4310787..4310831 | 17..61 | 100 | | Minus |
3R | 4309974..4310358 | 303..687 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:22 Download gff for
BO07753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 135696..136080 | 303..687 | 99 | <- | Minus |
arm_3R | 136136..136376 | 62..302 | 100 | <- | Minus |
arm_3R | 136509..136553 | 17..61 | 100 | | Minus |
BO07753.pep Sequence
Translation from 16 to 703
> BO07753.pep
MGLFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQ
AAQKNDRDTCVILAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLSTLRV
AGSLQKSTEVLQAMQSLVRYPELAGIMRDMSKEMMKAGIIEEMLDETMDS
LEESEELEEEASKEVDKVLWEITDGKLGEAPLPPEATPADKASASAARVE
AEQDDEEGEELQEMQSRLASLRSASFLDH
BO07753.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps24-PA | 223 | CG9779-PA | 1..223 | 1..223 | 1103 | 100 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 5..205 | 3..206 | 227 | 28 | Plus |
Vps2-PA | 256 | CG14542-PA | 4..183 | 3..181 | 195 | 25.8 | Plus |