Clone BO07753 Report

Search the DGRC for BO07753

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptvps24-RA
Protein status:BO07753.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO07753.5prime Sequence

701 bp (700 high quality bases) assembled on 2006-01-06

> BO07753.5prime
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTGCAAGCTTTCTAGAC
C

BO07753.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9779-PA 672 CG9779-RA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 1114 CG9779-RA 116..785 16..685 3350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4309976..4310358 685..303 1915 100 Minus
3R 32079331 3R 4310414..4310656 302..60 1215 100 Minus
3R 32079331 3R 4310785..4310832 63..16 240 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:43:53 has no hits.

BO07753.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:12 Download gff for BO07753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 17..689 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:22 Download gff for BO07753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 17..689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:37 Download gff for BO07753.5prime
Subject Subject Range Query Range Percent Splice Strand
vps24-RA 107..788 3..689 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:23 Download gff for BO07753.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps24-RA 107..788 3..689 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:23 Download gff for BO07753.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4309972..4310358 303..689 99 <- Minus
3R 4310414..4310654 62..302 100 <- Minus
3R 4310787..4310841 3..61 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:37 Download gff for BO07753.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 135694..136080 303..689 99 <- Minus
arm_3R 136136..136376 62..302 100 <- Minus
arm_3R 136509..136563 3..61 91   Minus

BO07753.3prime Sequence

701 bp (700 high quality bases) assembled on 2006-01-06

> BO07753.3prime
ATGGTCTAGAAAGCTTGCAGATCGCAGCGAGGCCAGGCGGCTTTGCATCT
CTTGCAGTTCCTCACCCTCCTCATCGTCCTGCTCAGCCTCGACGCGCGCA
GCAGACGCAGACGCCTTGTCCGCCGGTGTAGCCTCTGGAGGCAGGGGAGC
TTCCCCGAGCTTGCCATCTGTGATCTCCCACAAAACCTTGTCCACCTCCT
TGCTTGCCTCCTCCTCCAGCTCCTCGGACTCCTCCAGCGAGTCCATGGTC
TCGTCTAGCATCTCCTCAATAATGCCGGCCTTCATCATTTCCTTTGACAT
GTCGCGCATGATGCCTGCAAGCTCTGGATAGCGCACCAGGCTCTGCATAG
CTTGCAAGACCTCTGTAGACTTTTGCAGAGATCCAGCTACACGCAAGGTG
GATAGCTGATTTTTCATCTGCATCTGAATGGAGTTGAGGTGCGCCTTCGA
CGTATATATGCGGTTGATGGCCTTTCGCGCATTCACAATCTCCTTGGCAA
GAATGACGCAGGTGTCGCGGTCATTTTTCTGTGCTGCCTGTTTCAGCGAG
CGTTTTACTTTCTCTTCCTCGCGCTGGATACTTCGGATCTGGCGATCCAG
CTGGTTGCCCTCTTTCCGTATCTTATGCGTCCACTCCTGCACCTGCTCTT
TGGGATCTTTACTGGGAGTTCTGCCGAATAAGCCCATGTCGACTGATAAC
T

BO07753.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9779-PA 672 CG9779-RA 1..669 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 1114 CG9779-RA 116..785 688..19 3350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4309976..4310358 19..401 1915 100 Plus
3R 32079331 3R 4310414..4310656 402..644 1215 100 Plus
3R 32079331 3R 4310785..4310832 641..688 240 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:57:47 has no hits.

BO07753.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:11 Download gff for BO07753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 15..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:21 Download gff for BO07753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9779-PA 1..672 15..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:19 Download gff for BO07753.3prime
Subject Subject Range Query Range Percent Splice Strand
vps24-RA 107..788 15..701 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:50 Download gff for BO07753.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps24-RA 107..788 15..701 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:50 Download gff for BO07753.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4309972..4310358 15..401 99 <- Plus
3R 4310414..4310654 402..642 100 <- Plus
3R 4310787..4310841 643..701 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:19 Download gff for BO07753.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 135694..136080 15..401 99 <- Plus
arm_3R 136136..136376 402..642 100 <- Plus
arm_3R 136509..136563 643..701 91   Plus

BO07753.complete Sequence

703 bp (703 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630921

> BO07753.complete
GAAGTTATCAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATC
CCAAAGAGCAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAAC
CAGCTGGATCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAA
ACGCTCGCTGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCA
TTCTTGCCAAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATAT
ACGTCGAAGGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCT
ATCCACCTTGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGC
AAGCTATGCAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGC
GACATGTCAAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGA
CGAGACCATGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAA
GCAAGGAGGTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGG
GAAGCTCCCCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTC
TGCTGCGCGCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGC
AAGAGATGCAAAGCCGCCTGGCCTCGCTGCGATCTGCAAGCTTTCTAGAC
CAT

BO07753.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 672 CG9779-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-RA 1114 CG9779-RA 116..785 16..685 3350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4309976..4310358 685..303 1915 100 Minus
3R 32079331 3R 4310414..4310656 302..60 1215 100 Minus
3R 32079331 3R 4310785..4310832 63..16 240 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:56:08 has no hits.

BO07753.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:51 Download gff for BO07753.complete
Subject Subject Range Query Range Percent Splice Strand
CG9779-RA 1..672 17..689 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:29 Download gff for BO07753.complete
Subject Subject Range Query Range Percent Splice Strand
CG9779-RA 105..786 3..689 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:22 Download gff for BO07753.complete
Subject Subject Range Query Range Percent Splice Strand
vps24-RA 117..785 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:51 Download gff for BO07753.complete
Subject Subject Range Query Range Percent Splice Strand
CG9779-RA 105..786 3..689 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:10 Download gff for BO07753.complete
Subject Subject Range Query Range Percent Splice Strand
Vps24-RA 117..785 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:10 Download gff for BO07753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4310414..4310654 62..302 100 <- Minus
3R 4310787..4310831 17..61 100   Minus
3R 4309974..4310358 303..687 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:22 Download gff for BO07753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 135696..136080 303..687 99 <- Minus
arm_3R 136136..136376 62..302 100 <- Minus
arm_3R 136509..136553 17..61 100   Minus

BO07753.pep Sequence

Translation from 16 to 703

> BO07753.pep
MGLFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQ
AAQKNDRDTCVILAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLSTLRV
AGSLQKSTEVLQAMQSLVRYPELAGIMRDMSKEMMKAGIIEEMLDETMDS
LEESEELEEEASKEVDKVLWEITDGKLGEAPLPPEATPADKASASAARVE
AEQDDEEGEELQEMQSRLASLRSASFLDH

BO07753.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vps24-PA 223 CG9779-PA 1..223 1..223 1103 100 Plus
CHMP2B-PA 212 CG4618-PA 5..205 3..206 227 28 Plus
Vps2-PA 256 CG14542-PA 4..183 3..181 195 25.8 Plus