Clone Sequence Records
BO07762.3prime Sequence
605 bp (604 high quality bases) assembled on 2006-01-06
> BO07762.3prime
ATGGTCTAGAAAGCTTGCGTTGCGGATGAGAACCACTCGGGGATCGGAGG
CCACGCTCCACAGAAGTGGTGGCTGCTGGCGAATCACCTGGGTGGTGCGA
ACAGCGGGTGCCACAATGGGTGTGACCAATCGGCGGTGATCGTGCACCAC
CGTCTGGGTCTGATGCGAAACGGCAGTGGGCACGTGCTGCACCACCTCGC
CCACCTTGGCCACGGCTGGCTCCTGGATGGTCAATACGGTTCGTAGTCCA
TTACGAGCGGCCAGGATCAGAGGAAGAGGCACAGAGACGGGAATTCCGGC
AGAGACAAGACGGCCACTAATCGGATCGGCACTGCCACTGGATGCGGAGG
AGACCTGTTGCTCTTCCGCCTCCTCCTGGGATTGATCTTCCGGCTGGGCA
GCGGATGAGCTGACGGACCCCGAACTGCCATCGGCCAACTCAACGGAATC
CTCGCTGGCAATCGGAAGCAGCTGCGAGGACTTGACCGAACTGAGAGCCA
CAAGATTCGAGGGCCACTCCAAGCTGGCTGTATGCGAAGCTCCGATGGAG
ACCAGCACAATGGCCAAGACGGGCAGGAACAATCTAGACATGTCGACTGA
TAACT
BO07762.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13057-PA | 576 | retinin-RA | 1..573 | 591..19 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retinin-RA | 798 | CG13057-RA | 47..620 | 592..19 | 2870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16332050..16332611 | 580..19 | 2810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:57:30 has no hits.
BO07762.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:28 Download gff for
BO07762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13057-PA | 1..576 | 15..591 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:46 Download gff for
BO07762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13057-PA | 1..576 | 15..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:40 Download gff for
BO07762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 47..624 | 14..592 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:32:03 Download gff for
BO07762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 47..624 | 14..592 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:32:03 Download gff for
BO07762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16332051..16332615 | 14..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:40 Download gff for
BO07762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16325151..16325715 | 14..579 | 99 | | Minus |
BO07762.5prime Sequence
605 bp (604 high quality bases) assembled on 2006-01-06
> BO07762.5prime
GAAGTTATCAGTCGACATGTCTAGATTGTTCCTGCCCGTCTTGGCCATTG
TGCTGGTCTCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGCCCTCG
AATCTTGTGGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCGATTGC
CAGCGAGGATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGTCAGCT
CATCCGCTGCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAGAGCAA
CAGGTCTCCTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGCCGTCT
TGTCTCTGCCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCTGGCCG
CTCGTAATGGACTACGAACCGTATTGACCATCCAGGAGCCAGCCGTGGCC
AAGGTGGGCGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCATCAGAC
CCAGACGGTGGTGCACGATCACCGCCGATTGGTCACACCCATTGTGGCAC
CCGCTGTTCGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTCTGTGG
AGCGTGGCCTCCGATCCCCGAGTGGTTCTCATCCGCAACGCAAGCTTTCT
AGACC
BO07762.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13057-PA | 576 | retinin-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retinin-RA | 798 | CG13057-RA | 47..620 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16332050..16332611 | 28..589 | 2810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:57:40 has no hits.
BO07762.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:29 Download gff for
BO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13057-PA | 1..576 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:14:47 Download gff for
BO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13057-PA | 1..576 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:41 Download gff for
BO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 47..624 | 16..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:32:34 Download gff for
BO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 47..624 | 16..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:32:34 Download gff for
BO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16332051..16332615 | 29..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:41 Download gff for
BO07762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16325151..16325715 | 29..594 | 99 | | Plus |
BO07762.complete Sequence
607 bp (607 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630922
> BO07762.complete
GAAGTTATCAGTCGACATGTCTAGATTGTTCCTGCCCGTCTTGGCCATTG
TGCTGGTCTCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGCCCTCG
AATCTTGTGGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCGATTGC
CAGCGAGGATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGTCAGCT
CATCCGCTGCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAGAGCAA
CAGGTCTCCTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGCCGTCT
TGTCTCTGCCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCTGGCCG
CTCGTAATGGACTACGAACCGTATTGACCATCCAGGAGCCAGCCGTGGCC
AAGGTGGGCGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCATCAGAC
CCAGACGGTGGTGCACGATCACCGCCGATTGGTCACACCCATTGTGGCAC
CCGCTGTTCGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTCTGTGG
AGCGTGGCCTCCGATCCCCGAGTGGTTCTCATCCGCAACGCAAGCTTTCT
AGACCAT
BO07762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retinin-RA | 576 | CG13057-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retinin-RA | 798 | CG13057-RA | 47..620 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16332050..16332611 | 28..589 | 2810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:37:38 has no hits.
BO07762.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:52 Download gff for
BO07762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 1..576 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:30 Download gff for
BO07762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 61..638 | 16..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:50 Download gff for
BO07762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 48..620 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:52 Download gff for
BO07762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 61..638 | 16..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:53 Download gff for
BO07762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retinin-RA | 48..620 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:53 Download gff for
BO07762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16332050..16332611 | 28..591 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:50 Download gff for
BO07762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16325150..16325711 | 28..591 | 99 | | Plus |
BO07762.pep Sequence
Translation from 16 to 607
> BO07762.pep
MSRLFLPVLAIVLVSIGASHTASLEWPSNLVALSSVKSSQLLPIASEDSV
ELADGSSGSVSSSAAQPEDQSQEEAEEQQVSSASSGSADPISGRLVSAGI
PVSVPLPLILAARNGLRTVLTIQEPAVAKVGEVVQHVPTAVSHQTQTVVH
DHRRLVTPIVAPAVRTTQVIRQQPPLLWSVASDPRVVLIRNASFLDH
BO07762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retinin-PA | 191 | CG13057-PA | 1..191 | 1..191 | 924 | 100 | Plus |
| CG13043-PA | 148 | CG13043-PA | 26..86 | 107..170 | 159 | 51.6 | Plus |
| CG13063-PA | 129 | CG13063-PA | 25..85 | 107..170 | 149 | 48.4 | Plus |
