Clone Sequence Records
BO07768.3prime Sequence
905 bp (797 high quality bases) assembled on 2006-01-06
> BO07768.3prime
ATGGTCTAGAAAGCTTGCGTTGGTGAACTGACGCCGTTTTCGACTGGCCC
GAAAGCGACGATACCAGAACTCGCCGCACACTATTAAAAGAGCCAACGTG
AAGCCCAAGAGCAGGACCAGAAAGCACCCTTGCATGTCGTCCATGTTCAC
CTTGTGGTTGGTAACCTGGCGCTGGGCGCTCTTCCCGTTGCACTTGCCCG
CGCTGGGTAAGTTCATCTGGTGCCAGCGCTCGATGAAGCCCATCCGGAAC
ATGCTCTTGATGTGGCGGTTTACCAGGTGCAGATACGCACTCTGGGCCGG
CACAATCATGGCAATCTGCTCGTCCACGAAGCTCTCCCTGCCCAAAGCAA
AGTGGCACTCCTTCTCCCGCTCGAAGTGCCGCTGAACAATCAACTGCAGA
TTGATCCGCCAATCGATGTTGATGCGCTCGCCACGCTTCACCGCCTCGAT
GTCCTCCTCTTGGGCGCTGCCGTAGATTTTCGCCCGTTCCAGGTAGTGTT
TGAAGTCCTCCCGCGTTGTCGACTGAACGTACCGCTCGAAGAAGGTGCCG
TTTCGCAATCCATACTGTACAATGTCCTTGTGGTCCTCTAGTTGATTCAA
ATAGTCCACGCCCGGTTGAAATTTGGGGAACGTGAGGAAGGCCACAAGGT
TGCCGCAATAGGTGGTCACCAGCACGATAACCACGATCCACCAAAAGCCG
ACCACTAGGCGCCCACTGTCTGCTGTGGGCAAGTACATGCCTCCCTGTTG
TAACAAAGCCCCGAATATATACCAAAAACAGCTCTTAACTGTGGACAGGC
CCACGATTCGCATCTCCTTCAGAGGAGCTAGGCGATTAATGGCGTACAGC
GTGGGAGCAGTCAGCAGAATGATGCCCATTAGGCAGAACCAAGTCTCCAC
GGTGA
BO07768.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17274-PA | 1914 | CG17274-RA | 1025..1911 | 905..19 | 4435 | 100 | Minus |
CG17274-PB | 1578 | CG17274-RB | 689..1575 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2742 | CG42315-RD | 1718..2604 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851847..20852572 | 19..744 | 3630 | 100 | Plus |
3R | 32079331 | 3R | 20852695..20852857 | 743..905 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:35:36 has no hits.
BO07768.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:39 Download gff for
BO07768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PA | 1026..1914 | 16..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:03 Download gff for
BO07768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PB | 690..1578 | 16..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:50 Download gff for
BO07768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 1719..2612 | 12..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:29 Download gff for
BO07768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 1719..2612 | 12..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:29 Download gff for
BO07768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20851839..20852571 | 12..743 | 99 | <- | Plus |
3R | 20852696..20852856 | 744..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:50 Download gff for
BO07768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16677561..16678293 | 12..743 | 99 | <- | Plus |
arm_3R | 16678418..16678578 | 744..904 | 100 | | Plus |
BO07768.5prime Sequence
910 bp (780 high quality bases) assembled on 2006-01-06
> BO07768.5prime
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTANACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGCAATCAGTTTTT
CATCGCTGCC
BO07768.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17274-PA | 1914 | CG17274-RA | 1..894 | 17..910 | 4451 | 99.8 | Plus |
CG17274-PB | 1578 | CG17274-RB | 41..558 | 393..910 | 2571 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2742 | CG42315-RD | 694..1587 | 17..910 | 4459 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20853873..20854251 | 395..17 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 20853124..20853308 | 827..643 | 899 | 98.9 | Minus |
3R | 32079331 | 3R | 20853359..20853507 | 646..498 | 745 | 100 | Minus |
3R | 32079331 | 3R | 20853565..20853669 | 497..393 | 525 | 100 | Minus |
3R | 32079331 | 3R | 20852988..20853071 | 910..827 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:35:39 has no hits.
BO07768.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:40 Download gff for
BO07768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:04 Download gff for
BO07768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17274-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:52 Download gff for
BO07768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 689..1587 | 10..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:34 Download gff for
BO07768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 689..1587 | 10..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:34 Download gff for
BO07768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20852988..20853071 | 827..910 | 100 | <- | Minus |
3R | 20853125..20853304 | 647..826 | 99 | <- | Minus |
3R | 20853359..20853507 | 498..646 | 100 | <- | Minus |
3R | 20853565..20853667 | 395..497 | 100 | <- | Minus |
3R | 20853874..20854256 | 10..394 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:52 Download gff for
BO07768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16678710..16678793 | 827..910 | 100 | <- | Minus |
arm_3R | 16678847..16679026 | 647..826 | 99 | <- | Minus |
arm_3R | 16679081..16679229 | 498..646 | 100 | <- | Minus |
arm_3R | 16679287..16679389 | 395..497 | 100 | <- | Minus |
arm_3R | 16679596..16679978 | 10..394 | 99 | | Minus |
BO07768.complete Sequence
1945 bp (1945 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630924
> BO07768.complete
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTAAACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGCAATCAGTTTTT
CATCGCTGCCGTGGCAGCCACCGTTGAGGATCCCGACCAAAAGCCCTTCA
ATTATACCCAGCCCATCAGTGTGCAGAAGTACTCCTTCATCACCCGCAAG
CCGGATGAGGTGTCCCGCATTTACTTGTTCACGGCACCCTTCACCGTGGA
GACTTGGTTCTGCCTAATGGGCATCATTCTGCTGACTGCTCCCACGCTGT
ACGCCATTAATCGCCTAGCTCCTCTGAAGGAGATGCGAATCGTGGGCCTG
TCCACAGTTAAGAGCTGTTTTTGGTATATATTCGGGGCTTTGTTACAACA
GGGAGGCATGTACTTGCCCACAGCAGACAGTGGGCGCCTAGTGGTCGGCT
TTTGGTGGATCGTGGTTATCGTGCTGGTGACCACCTATTGCGGCAACCTT
GTGGCCTTCCTCACGTTCCCCAAATTTCAACCGGGCGTGGACTATTTGAA
TCAACTAGAGGACCACAAGGACATTGTACAGTATGGATTGCGAAACGGCA
CCTTCTTCGAGCGGTACGTTCAGTCGACAACGCGGGAGGACTTCAAACAC
TACCTGGAACGGGCGAAAATCTACGGCAGCGCCCAAGAGGAGGACATCGA
GGCGGTGAAGCGTGGCGAGCGCATCAACATCGATTGGCGGATCAATCTGC
AGTTGATTGTTCAGCGGCACTTCGAGCGGGAGAAGGAGTGCCACTTTGCT
TTGGGCAGGGAGAGCTTCGTGGACGAGCAGATTGCCATGATTGTGCCGGC
CCAGAGTGCGTATCTGCACCTGGTAAACCGCCACATCAAGAGCATGTTCC
GGATGGGCTTCATCGAGCGCTGGCACCAGATGAACTTACCCAGCGCGGGC
AAGTGCAACGGGAAGAGCGCCCAGCGCCAGGTTACCAACCACAAGGTGAA
CATGGACGACATGCAAGGGTGCTTTCTGGTCCTGCTCTTGGGCTTCACGT
TGGCTCTTTTAATAGTGTGCGGCGAGTTCTGGTATCGTCGCTTTCGGGCC
AGTCGAAAACGGCGTCAGTTCACCAACGCAAGCTTTCTAGACCAT
BO07768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2607 | CG42315-PD | 694..2604 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-RD | 2742 | CG42315-RD | 694..2604 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851847..20852572 | 1927..1202 | 3630 | 100 | Minus |
3R | 32079331 | 3R | 20853873..20854251 | 395..17 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 20852695..20853071 | 1203..827 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 20853124..20853308 | 827..643 | 910 | 99.5 | Minus |
3R | 32079331 | 3R | 20853359..20853507 | 646..498 | 745 | 100 | Minus |
3R | 32079331 | 3R | 20853565..20853669 | 497..393 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:56:30 has no hits.
BO07768.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:11 Download gff for
BO07768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42315-RC | 1..1914 | 17..1930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:56 Download gff for
BO07768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42315-RC | 333..2256 | 10..1934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:53 Download gff for
BO07768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 694..2604 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:11 Download gff for
BO07768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42315-RC | 333..2256 | 10..1934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:33 Download gff for
BO07768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir93a-RD | 694..2604 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:33 Download gff for
BO07768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20853565..20853667 | 395..497 | 100 | <- | Minus |
3R | 20852696..20853071 | 827..1202 | 100 | <- | Minus |
3R | 20853125..20853304 | 647..826 | 100 | <- | Minus |
3R | 20853359..20853507 | 498..646 | 100 | <- | Minus |
3R | 20851843..20852571 | 1203..1929 | 99 | <- | Minus |
3R | 20853874..20854251 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:53 Download gff for
BO07768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16677565..16678293 | 1203..1929 | 99 | <- | Minus |
arm_3R | 16678418..16678793 | 827..1202 | 100 | <- | Minus |
arm_3R | 16678847..16679026 | 647..826 | 100 | <- | Minus |
arm_3R | 16679081..16679229 | 498..646 | 100 | <- | Minus |
arm_3R | 16679287..16679389 | 395..497 | 100 | <- | Minus |
arm_3R | 16679596..16679973 | 17..394 | 100 | | Minus |
BO07768.pep Sequence
Translation from 16 to 1945
> BO07768.pep
MRQQFLVISAFHEDIIEIAETLNMFHVGNQWMIFVLDMVARDFDAGTVTI
NLDEGANIAFALNETDPNCQDSLNCTISEISLALVNAISKITVEEESIYG
EISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVETAITWG
KSQENRKFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQELAFPHIEHHFR
NITMDILTVHNPPWQILTKNSNGVIVEHKGIVMEIVKELSRALNFSYYLH
EASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVA
ATVEDPDQKPFNYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCL
MGIILLTAPTLYAINRLAPLKEMRIVGLSTVKSCFWYIFGALLQQGGMYL
PTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDH
KDIVQYGLRNGTFFERYVQSTTREDFKHYLERAKIYGSAQEEDIEAVKRG
ERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYL
HLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQ
GCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQFTNASFLDH
BO07768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir93a-PD | 868 | CG42315-PD | 232..868 | 1..637 | 3355 | 100 | Plus |
Ir76b-PA | 636 | CG7385-PA | 87..498 | 206..624 | 272 | 24.3 | Plus |
GluRIIE-PB | 897 | CG31201-PB | 387..830 | 174..615 | 260 | 22.7 | Plus |
CG3822-PA | 853 | CG3822-PA | 409..846 | 195..632 | 259 | 20.3 | Plus |
CG11155-PD | 910 | CG11155-PD | 400..854 | 176..639 | 258 | 21 | Plus |