Clone BO07768 Report

Search the DGRC for BO07768

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptIr93a-RC
Protein status:BO07768.pep: validated full length
Sequenced Size:1945

Clone Sequence Records

BO07768.3prime Sequence

905 bp (797 high quality bases) assembled on 2006-01-06

> BO07768.3prime
ATGGTCTAGAAAGCTTGCGTTGGTGAACTGACGCCGTTTTCGACTGGCCC
GAAAGCGACGATACCAGAACTCGCCGCACACTATTAAAAGAGCCAACGTG
AAGCCCAAGAGCAGGACCAGAAAGCACCCTTGCATGTCGTCCATGTTCAC
CTTGTGGTTGGTAACCTGGCGCTGGGCGCTCTTCCCGTTGCACTTGCCCG
CGCTGGGTAAGTTCATCTGGTGCCAGCGCTCGATGAAGCCCATCCGGAAC
ATGCTCTTGATGTGGCGGTTTACCAGGTGCAGATACGCACTCTGGGCCGG
CACAATCATGGCAATCTGCTCGTCCACGAAGCTCTCCCTGCCCAAAGCAA
AGTGGCACTCCTTCTCCCGCTCGAAGTGCCGCTGAACAATCAACTGCAGA
TTGATCCGCCAATCGATGTTGATGCGCTCGCCACGCTTCACCGCCTCGAT
GTCCTCCTCTTGGGCGCTGCCGTAGATTTTCGCCCGTTCCAGGTAGTGTT
TGAAGTCCTCCCGCGTTGTCGACTGAACGTACCGCTCGAAGAAGGTGCCG
TTTCGCAATCCATACTGTACAATGTCCTTGTGGTCCTCTAGTTGATTCAA
ATAGTCCACGCCCGGTTGAAATTTGGGGAACGTGAGGAAGGCCACAAGGT
TGCCGCAATAGGTGGTCACCAGCACGATAACCACGATCCACCAAAAGCCG
ACCACTAGGCGCCCACTGTCTGCTGTGGGCAAGTACATGCCTCCCTGTTG
TAACAAAGCCCCGAATATATACCAAAAACAGCTCTTAACTGTGGACAGGC
CCACGATTCGCATCTCCTTCAGAGGAGCTAGGCGATTAATGGCGTACAGC
GTGGGAGCAGTCAGCAGAATGATGCCCATTAGGCAGAACCAAGTCTCCAC
GGTGA

BO07768.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17274-PA 1914 CG17274-RA 1025..1911 905..19 4435 100 Minus
CG17274-PB 1578 CG17274-RB 689..1575 905..19 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2742 CG42315-RD 1718..2604 905..19 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851847..20852572 19..744 3630 100 Plus
3R 32079331 3R 20852695..20852857 743..905 815 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:35:36 has no hits.

BO07768.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:39 Download gff for BO07768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PA 1026..1914 16..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:03 Download gff for BO07768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PB 690..1578 16..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:50 Download gff for BO07768.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 1719..2612 12..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:29 Download gff for BO07768.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 1719..2612 12..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:29 Download gff for BO07768.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20851839..20852571 12..743 99 <- Plus
3R 20852696..20852856 744..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:50 Download gff for BO07768.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16677561..16678293 12..743 99 <- Plus
arm_3R 16678418..16678578 744..904 100   Plus

BO07768.5prime Sequence

910 bp (780 high quality bases) assembled on 2006-01-06

> BO07768.5prime
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTANACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGCAATCAGTTTTT
CATCGCTGCC

BO07768.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17274-PA 1914 CG17274-RA 1..894 17..910 4451 99.8 Plus
CG17274-PB 1578 CG17274-RB 41..558 393..910 2571 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2742 CG42315-RD 694..1587 17..910 4459 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20853873..20854251 395..17 1895 100 Minus
3R 32079331 3R 20853124..20853308 827..643 899 98.9 Minus
3R 32079331 3R 20853359..20853507 646..498 745 100 Minus
3R 32079331 3R 20853565..20853669 497..393 525 100 Minus
3R 32079331 3R 20852988..20853071 910..827 420 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:35:39 has no hits.

BO07768.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:40 Download gff for BO07768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:04 Download gff for BO07768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17274-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:52 Download gff for BO07768.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 689..1587 10..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:34 Download gff for BO07768.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 689..1587 10..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:34 Download gff for BO07768.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20852988..20853071 827..910 100 <- Minus
3R 20853125..20853304 647..826 99 <- Minus
3R 20853359..20853507 498..646 100 <- Minus
3R 20853565..20853667 395..497 100 <- Minus
3R 20853874..20854256 10..394 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:52 Download gff for BO07768.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16678710..16678793 827..910 100 <- Minus
arm_3R 16678847..16679026 647..826 99 <- Minus
arm_3R 16679081..16679229 498..646 100 <- Minus
arm_3R 16679287..16679389 395..497 100 <- Minus
arm_3R 16679596..16679978 10..394 99   Minus

BO07768.complete Sequence

1945 bp (1945 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630924

> BO07768.complete
GAAGTTATCAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTC
ACGAGGACATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGC
AATCAGTGGATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGC
CGGCACTGTGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCC
TCAACGAAACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCG
GAAATTAGTCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGA
GGAGTCCATATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCT
TTACCAAGCAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTC
CTGAAGACCAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGAC
GGCCATTACCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTC
CCCAACGCGACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTAT
TGGACACCCGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACAT
CGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATC
CACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCAC
AAGGGCATTGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTAAACTT
CAGCTACTACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCA
GCACATCAGCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACC
TTTCGTATACCCTATCGAGTGGTGGAGATGGTGCAGGGCAATCAGTTTTT
CATCGCTGCCGTGGCAGCCACCGTTGAGGATCCCGACCAAAAGCCCTTCA
ATTATACCCAGCCCATCAGTGTGCAGAAGTACTCCTTCATCACCCGCAAG
CCGGATGAGGTGTCCCGCATTTACTTGTTCACGGCACCCTTCACCGTGGA
GACTTGGTTCTGCCTAATGGGCATCATTCTGCTGACTGCTCCCACGCTGT
ACGCCATTAATCGCCTAGCTCCTCTGAAGGAGATGCGAATCGTGGGCCTG
TCCACAGTTAAGAGCTGTTTTTGGTATATATTCGGGGCTTTGTTACAACA
GGGAGGCATGTACTTGCCCACAGCAGACAGTGGGCGCCTAGTGGTCGGCT
TTTGGTGGATCGTGGTTATCGTGCTGGTGACCACCTATTGCGGCAACCTT
GTGGCCTTCCTCACGTTCCCCAAATTTCAACCGGGCGTGGACTATTTGAA
TCAACTAGAGGACCACAAGGACATTGTACAGTATGGATTGCGAAACGGCA
CCTTCTTCGAGCGGTACGTTCAGTCGACAACGCGGGAGGACTTCAAACAC
TACCTGGAACGGGCGAAAATCTACGGCAGCGCCCAAGAGGAGGACATCGA
GGCGGTGAAGCGTGGCGAGCGCATCAACATCGATTGGCGGATCAATCTGC
AGTTGATTGTTCAGCGGCACTTCGAGCGGGAGAAGGAGTGCCACTTTGCT
TTGGGCAGGGAGAGCTTCGTGGACGAGCAGATTGCCATGATTGTGCCGGC
CCAGAGTGCGTATCTGCACCTGGTAAACCGCCACATCAAGAGCATGTTCC
GGATGGGCTTCATCGAGCGCTGGCACCAGATGAACTTACCCAGCGCGGGC
AAGTGCAACGGGAAGAGCGCCCAGCGCCAGGTTACCAACCACAAGGTGAA
CATGGACGACATGCAAGGGTGCTTTCTGGTCCTGCTCTTGGGCTTCACGT
TGGCTCTTTTAATAGTGTGCGGCGAGTTCTGGTATCGTCGCTTTCGGGCC
AGTCGAAAACGGCGTCAGTTCACCAACGCAAGCTTTCTAGACCAT

BO07768.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2607 CG42315-PD 694..2604 17..1927 9555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-RD 2742 CG42315-RD 694..2604 17..1927 9555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851847..20852572 1927..1202 3630 100 Minus
3R 32079331 3R 20853873..20854251 395..17 1895 100 Minus
3R 32079331 3R 20852695..20853071 1203..827 1885 100 Minus
3R 32079331 3R 20853124..20853308 827..643 910 99.5 Minus
3R 32079331 3R 20853359..20853507 646..498 745 100 Minus
3R 32079331 3R 20853565..20853669 497..393 525 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:56:30 has no hits.

BO07768.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:11 Download gff for BO07768.complete
Subject Subject Range Query Range Percent Splice Strand
CG42315-RC 1..1914 17..1930 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:56 Download gff for BO07768.complete
Subject Subject Range Query Range Percent Splice Strand
CG42315-RC 333..2256 10..1934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:53 Download gff for BO07768.complete
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 694..2604 17..1929 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:11 Download gff for BO07768.complete
Subject Subject Range Query Range Percent Splice Strand
CG42315-RC 333..2256 10..1934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:33 Download gff for BO07768.complete
Subject Subject Range Query Range Percent Splice Strand
Ir93a-RD 694..2604 17..1929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:33 Download gff for BO07768.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20853565..20853667 395..497 100 <- Minus
3R 20852696..20853071 827..1202 100 <- Minus
3R 20853125..20853304 647..826 100 <- Minus
3R 20853359..20853507 498..646 100 <- Minus
3R 20851843..20852571 1203..1929 99 <- Minus
3R 20853874..20854251 17..394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:53 Download gff for BO07768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16677565..16678293 1203..1929 99 <- Minus
arm_3R 16678418..16678793 827..1202 100 <- Minus
arm_3R 16678847..16679026 647..826 100 <- Minus
arm_3R 16679081..16679229 498..646 100 <- Minus
arm_3R 16679287..16679389 395..497 100 <- Minus
arm_3R 16679596..16679973 17..394 100   Minus

BO07768.pep Sequence

Translation from 16 to 1945

> BO07768.pep
MRQQFLVISAFHEDIIEIAETLNMFHVGNQWMIFVLDMVARDFDAGTVTI
NLDEGANIAFALNETDPNCQDSLNCTISEISLALVNAISKITVEEESIYG
EISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVETAITWG
KSQENRKFRSTPQRDAKNRNFEFINIGYWTPVLGFVCQELAFPHIEHHFR
NITMDILTVHNPPWQILTKNSNGVIVEHKGIVMEIVKELSRALNFSYYLH
EASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVA
ATVEDPDQKPFNYTQPISVQKYSFITRKPDEVSRIYLFTAPFTVETWFCL
MGIILLTAPTLYAINRLAPLKEMRIVGLSTVKSCFWYIFGALLQQGGMYL
PTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQLEDH
KDIVQYGLRNGTFFERYVQSTTREDFKHYLERAKIYGSAQEEDIEAVKRG
ERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAMIVPAQSAYL
HLVNRHIKSMFRMGFIERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQ
GCFLVLLLGFTLALLIVCGEFWYRRFRASRKRRQFTNASFLDH

BO07768.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ir93a-PD 868 CG42315-PD 232..868 1..637 3355 100 Plus
Ir76b-PA 636 CG7385-PA 87..498 206..624 272 24.3 Plus
GluRIIE-PB 897 CG31201-PB 387..830 174..615 260 22.7 Plus
CG3822-PA 853 CG3822-PA 409..846 195..632 259 20.3 Plus
CG11155-PD 910 CG11155-PD 400..854 176..639 258 21 Plus