Clone Sequence Records
BO07776.3prime Sequence
955 bp (787 high quality bases) assembled on 2006-01-06
> BO07776.3prime
ATGGTCTAGAAAGCTTGCAAAAACTGCTTTTTTGTTTGGGTACCCAAAGA
AACCAATGCTTTTAAGCTCCATAAGAAGCTCGTGGTCGTTGCCAATTGCC
TTGAAAATGGCTTTCTCTAACTCGTCGTATTGGAAGTGTGGCGAAAAGGG
CATGTCGTTCAGGGCGTTGAAGAGCGTGTTCCCGCGCTCGTTGCCAATAA
CCAATGTGCGACCACAGTGGGAAAACCTGGCCACAGTATTAAAAGAAGAG
TCCATCTTGTGCTTGGACATGGGTCTTAGCAAATTTCGGCGAAAGTCCCA
GACGTTAGCGGTTTCCCGGTTCACCGTCACAATAATCGTAGAGTGGGTGG
GGCTCCACTTGGCCCAATGCACTGGGGTCATCTCGTCTAGCAGTTCGAGA
AGAGGTCGCGTGATGCCATCGACCCAAATGCGTACGAACCAATCGTTGCC
GCAGGTGAGGAAGAGTTTGGGAGACCAAGGCGAGAACTCCATTACGGTGA
CACCCCCGTCGTGACAACGCAGGACTTCCAAGTACTGATGCTGATAATTG
ATTGAGCACTTGTGGATGCAGCCCTCATCTGTCAGCACGTAGTAAATGTC
CTTGTGCAGAGGATGTGTAGTGATGCTTAAGCCTTGCGGGTGGCGGTTAG
ACTCGCAGGGGATACGCGACGATGGGTGAACGAAAATGCCCTCAGGATGC
CCCTCGACTCGCTCCAGAATCATTTGGGTAAAACCAAGCAGGAAGGGACT
TTTGATAATCCGGAAGCGGGTGACCGAGCCATCCTGGGAGAGGCTCANGA
ATGGATCGATGTCTGTTTCATGATCGTCGTCTGAAACTTGTTTGATCCAG
CGGATGGCAACCACCGGCGAGGAGCCTGGCGAAGTGCTGCGCTGCGAGAC
CGCAACGGGTGTGTCCCTGCAACTGCTCACATCTCGCACTTCCACGCTGC
CGTCG
BO07776.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7051-PB | 2055 | CG7051-RB | 1155..2052 | 916..19 | 4471 | 99.8 | Minus |
| CG7051-PA | 2295 | CG7051-RA | 1395..2292 | 916..19 | 4471 | 99.8 | Minus |
| CG7051-PB | 2055 | CG7051-RB | 1116..1150 | 955..921 | 175 | 100 | Minus |
| CG7051-PA | 2295 | CG7051-RA | 1356..1390 | 955..921 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2642 | CG7051-RB | 1574..2510 | 955..19 | 4629 | 99.7 | Minus |
| Dic61B-RA | 2616 | CG7051-RA | 1548..2484 | 955..19 | 4629 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 150347..150864 | 438..955 | 2519 | 99 | Plus |
| 3L | 28110227 | 3L | 150082..150297 | 225..440 | 1080 | 100 | Plus |
| 3L | 28110227 | 3L | 149811..150020 | 19..228 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:53:20 has no hits.
BO07776.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:52 Download gff for
BO07776.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 1356..2295 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:21 Download gff for
BO07776.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 1356..2295 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:14 Download gff for
BO07776.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 1548..2484 | 19..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:55 Download gff for
BO07776.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 1548..2484 | 19..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:55 Download gff for
BO07776.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 149811..150018 | 19..226 | 100 | <- | Plus |
| 3L | 150084..150296 | 227..439 | 100 | <- | Plus |
| 3L | 150349..150864 | 440..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:14 Download gff for
BO07776.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 149811..150018 | 19..226 | 100 | <- | Plus |
| arm_3L | 150084..150296 | 227..439 | 100 | <- | Plus |
| arm_3L | 150349..150864 | 440..955 | 99 | | Plus |
BO07776.5prime Sequence
885 bp (795 high quality bases) assembled on 2006-01-06
> BO07776.5prime
GAAGTTATCAGTCGACATGACACCTAAGTCGATCCAAGATGACACCTATG
TGGAGCAGTTCATGAAGTACAACCTAAATGTCATGCACCAAATGACTAAC
TTCACTACAATGGTAGCGAAGAGCACGACCAGATCCCGCACGCGGTCTAG
TGTTCGGGCCGGAATAGGCGGCAATAAGCAGTCCATTGACGACCTGATGA
ACGGGATACTTTATGAAACTATTAACTGGGAACCGTACAGCACTGTTGAG
GCTCTCGAAGAGGCGTACGAGCCAAAGCCGTATACCAAGTCCTTTTTAAA
GATCACCTTACGCAAGTCTGACTTCTTCGAAATTCACAGCCAGACGCAGA
CGACGGTGGCCAAGGGATCGCCCGAGGGCGACGATGCGGAGCGAGACAAC
CGAAACTACGAGTATCTGACAATAGGGAAAGGCAAAATTCGCCGGCGCTC
AGACAATGACGCTCAGACAGATACTCTGCTCTTCACCACTCGGGCAGTCA
ACACCATCCTCATAACCAAGGCCACCGTCAGCTCTTACGTTTCCAACTTT
GAGATGTACGACACGCTGAACAATATCACCAAGGAGTTCGCAACAGCCAC
TATGAGTTCGGTAAAGGACCTGACCTCGGCTCTAGCGCAGACGGAGGATG
CGGATACCTTTGAGGACGACGAGGCCGTTGCCGAAAAAGACAAGGTCAGC
AGCCAGATAGAGCGCCTGTTCCGGAGCCCCGAGTTTCGCAACGCCATCAT
GTACATGGGCCGCACGCTCTCGAGCAACACAAACGAGGCGGGGTTACGAC
GCTTCCGTAACTTTGACCAGGTGGAACGCTGGAACGCGGAGGCCGAGTAC
GTCTACTCGATGAACTTGCTCTTTCGGCTGGTACC
BO07776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7051-PB | 2055 | CG7051-RB | 1..869 | 17..885 | 4345 | 100 | Plus |
| CG7051-PA | 2295 | CG7051-RA | 241..1109 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2642 | CG7051-RB | 459..1327 | 17..885 | 4345 | 100 | Plus |
| Dic61B-RA | 2616 | CG7051-RA | 433..1301 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 151111..151791 | 885..205 | 3405 | 100 | Minus |
| 3L | 28110227 | 3L | 151848..152036 | 205..17 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:30:45 has no hits.
BO07776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:53 Download gff for
BO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 235..1109 | 11..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:22 Download gff for
BO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 235..1109 | 11..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:14 Download gff for
BO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 427..1301 | 11..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:29 Download gff for
BO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 427..1301 | 11..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:29 Download gff for
BO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 151111..151790 | 206..885 | 100 | <- | Minus |
| 3L | 151848..152042 | 11..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:14 Download gff for
BO07776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 151111..151790 | 206..885 | 100 | <- | Minus |
| arm_3L | 151848..152042 | 11..205 | 98 | | Minus |
BO07776.complete Sequence
2086 bp (2086 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630925
> BO07776.complete
GAAGTTATCAGTCGACATGACACCTAAGTCGATCCAAGATGACACCTATG
TGGAGCAGTTCATGAAGTACAACCTAAATGTCATGCACCAAATGACTAAC
TTCACTACAATGGTAGCGAAGAGCACGACCAGATCCCGCACGCGGTCTAG
TGTTCGGGCCGGAATAGGCGGCAATAAGCAGTCCATTGACGACCTGATGA
ACGGGATACTTTATGAAACTATTAACTGGGAACCGTACAGCACTGTTGAG
GCTCTCGAAGAGGCGTACGAGCCAAAGCCGTATACCAAGTCCTTTTTAAA
GATCACCTTACGCAAGTCTGACTTCTTCGAAATTCACAGCCAGACGCAGA
CGACGGTGGCCAAGGGATCGCCCGAGGGCGACGATGCGGAGCGAGACAAC
CGAAACTACGAGTATCTGACAATAGGGAAAGGCAAAATTCGCCGGCGCTC
AGACAATGACGCTCAGACAGATACTCTGCTCTTCACCACTCGGGCAGTCA
ACACCATCCTCATAACCAAGGCCACCGTCAGCTCTTACGTTTCCAACTTT
GAGATGTACGACACGCTGAACAATATCACCAAGGAGTTCGCAACAGCCAC
TATGAGTTCGGTAAAGGACCTGACCTCGGCTCTAGCGCAGACGGAGGATG
CGGATACCTTTGAGGACGACGAGGCCGTTGCCGAAAAAGACAAGGTCAGC
AGCCAGATAGAGCGCCTGTTCCGGAGCCCCGAGTTTCGCAACGCCATCAT
GTACATGGGCCGCACGCTCTCGAGCAACACAAACGAGGCGGGGTTACGAC
GCTTCCGTAACTTTGACCAGGTGGAACGCTGGAACGCGGAGGCCGAGTAC
GTCTACTCGATGAACTTGCTCTTTCGGCTGGTACCGGAGCCCAGCAAAGA
CGAGCGCAAGGCCGTAAGCGACATTGATTTCTGCCGCAGCAATGGTGACA
TCCTGGCTGTAGCCTACGGACTGTACTCATTTTCCTCACAGCACGTACCG
ACCTCCGGCAGCGTTTTCCTGTGGAGCATTAAAAATCCAGGCGAGCCGGA
GCGCGCATACTACTACGATGTGCCAGTAACGGCAATAAACTTCTCGCCAT
TCTTGCCATCCTTGCTCGCCATTGGTCTGTACGACGGCAGCGTGGAAGTG
CGAGATGTGAGCAGTTTGCAGGACACACCCGTTGCGGTCTCGCAGCGCAG
CACTTCGCCAGGCTCCTCGCCGGTGGTTGCCATCCGCTGGATCAAACAAG
TTTCAGACGACGATCATGAAACAGACATCGATCCATTCCTGAGCCTCTCC
CAGGATGGCTCGGTCACCCGCTTCCGGATTATCAAAAGTCCCTTCCTGCT
TGGTTTTACCCAAATGATTCTGGAGCGAGTCGAGGGGCATCCTGAGGGCA
TTTTCGTTCACCCATCGTCGCGTATCCCCTGCGAGTCTAACCGCCACCCG
CAAGGCTTAAGCATCACTACACATCCTCTGCACAAGGACATTTACTACGT
GCTGACAGATGAGGGCTGCATCCACAAGTGCTCAATCAATTATCAGCATC
AGTACTTGGAAGTCCTGCGTTGTCACGACGGGGGTGTCACCGTAATGGAG
TTCTCGCCTTGGTCTCCCAAACTCTTCCTCACCTGCGGCAACGATTGGTT
CGTACGCATTTGGGTCGATGGCATCACGCGACCTCTTCTCGAACTGCTAG
ACGAGATGACCCCAGTGCATTGGGCCAAGTGGAGCCCCACCCACTCTACG
ATTATTGTGACGGTGAACCGGGAAACCGCTAACGTCTGGGACTTTCGCCG
AAATTTGCTAAGACCCATGTCCAAGCACAAGATGGACTCTTCTTTTAATA
CTGTGGCCAGGTTTTCCCACTGTGGTCGCACATTGGTTATTGGCAACGAG
CGCGGGAACACGCTCTTCAACGCCCTGAACGACATGCCCTTTTCGCCACA
CTTCCAATACGACGAGTTAGAGAAAGCCATTTTCAAGGCAATTGGCAACG
ACCACGAGCTTCTTATGGAGCTTAAAAGCATTGGTTTCTTTGGGTACCCA
AACAAAAAAGCAGTTTTTGCAAGCTTTCTAGACCAT
BO07776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2055 | CG7051-PB | 1..2052 | 17..2068 | 10260 | 100 | Plus |
| Dic61B-RA | 2295 | CG7051-PA | 241..2292 | 17..2068 | 10260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2642 | CG7051-RB | 459..2510 | 17..2068 | 10260 | 100 | Plus |
| Dic61B-RA | 2616 | CG7051-RA | 433..2484 | 17..2068 | 10260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 150347..151791 | 1649..205 | 7225 | 100 | Minus |
| 3L | 28110227 | 3L | 150082..150297 | 1862..1647 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 149811..150020 | 2068..1859 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 151848..152036 | 205..17 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:42 has no hits.
BO07776.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:12 Download gff for
BO07776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 235..2295 | 11..2069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:58 Download gff for
BO07776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 427..2484 | 11..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:00 Download gff for
BO07776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 433..2484 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:12 Download gff for
BO07776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 427..2484 | 11..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:37 Download gff for
BO07776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 433..2484 | 17..2070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:37 Download gff for
BO07776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 149809..150018 | 1861..2070 | 99 | <- | Minus |
| 3L | 150084..150296 | 1648..1860 | 100 | <- | Minus |
| 3L | 150349..151790 | 206..1647 | 100 | <- | Minus |
| 3L | 151848..152036 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:00 Download gff for
BO07776.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 149809..150018 | 1861..2070 | 99 | <- | Minus |
| arm_3L | 150084..150296 | 1648..1860 | 100 | <- | Minus |
| arm_3L | 150349..151790 | 206..1647 | 100 | <- | Minus |
| arm_3L | 151848..152036 | 17..205 | 100 | | Minus |
BO07776.pep Sequence
Translation from 16 to 2086
> BO07776.pep
MTPKSIQDDTYVEQFMKYNLNVMHQMTNFTTMVAKSTTRSRTRSSVRAGI
GGNKQSIDDLMNGILYETINWEPYSTVEALEEAYEPKPYTKSFLKITLRK
SDFFEIHSQTQTTVAKGSPEGDDAERDNRNYEYLTIGKGKIRRRSDNDAQ
TDTLLFTTRAVNTILITKATVSSYVSNFEMYDTLNNITKEFATATMSSVK
DLTSALAQTEDADTFEDDEAVAEKDKVSSQIERLFRSPEFRNAIMYMGRT
LSSNTNEAGLRRFRNFDQVERWNAEAEYVYSMNLLFRLVPEPSKDERKAV
SDIDFCRSNGDILAVAYGLYSFSSQHVPTSGSVFLWSIKNPGEPERAYYY
DVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGS
SPVVAIRWIKQVSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQM
ILERVEGHPEGIFVHPSSRIPCESNRHPQGLSITTHPLHKDIYYVLTDEG
CIHKCSINYQHQYLEVLRCHDGGVTVMEFSPWSPKLFLTCGNDWFVRIWV
DGITRPLLELLDEMTPVHWAKWSPTHSTIIVTVNRETANVWDFRRNLLRP
MSKHKMDSSFNTVARFSHCGRTLVIGNERGNTLFNALNDMPFSPHFQYDE
LEKAIFKAIGNDHELLMELKSIGFFGYPNKKAVFASFLDH
BO07776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-PB | 684 | CG7051-PB | 1..684 | 1..684 | 3593 | 100 | Plus |
| Dic61B-PA | 764 | CG7051-PA | 81..764 | 1..684 | 3593 | 100 | Plus |
| CG13930-PA | 685 | CG13930-PA | 42..677 | 37..678 | 1301 | 43.2 | Plus |
| CG9313-PC | 739 | CG9313-PC | 355..681 | 294..632 | 310 | 28.7 | Plus |
| CG9313-PA | 739 | CG9313-PA | 355..681 | 294..632 | 310 | 28.7 | Plus |
