Clone BO07777 Report

Search the DGRC for BO07777

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG17739-RA
Protein status:BO07777.pep: validated full length
Sequenced Size:2653

Clone Sequence Records

BO07777.3prime Sequence

936 bp (769 high quality bases) assembled on 2006-01-06

> BO07777.3prime
ATGGTCTAGAAAGCTTGCCCACCGCTCTGGATCATCGTTGCTGGTCAGCT
GGCAAGGCATCATCACGCACTTTTCCATGCGGACGCGATCCTTGCACTTG
TAGCTCAGATCGGTGTTCATTAGGGTTCGGGTTCGTTGGCGAACGGCATT
ATCGCCACACGTGGCGGTGCATGGTGTCCAGGCGGACCACTCCGAGTAGC
GACACTCGTCCTGCGGTTCCGGTTGCGGAGCTCTTACCACATGCCTTCGC
TCTCCAAATCCCCGTCCACTGATTGAGTACATGTCATCGCACCGCTGGTA
GCAGCGATCCAAACGTACCAGGTGCTTGGGACATGGCTTGCCTCCATACT
TCGGAGTACGGAGCACCCGACGCGTTCGCAATTGGAAGCCATCGCCGCAG
GAGGCGTTGCAACTGTGGGAAACCCAGTCAGAGACGAGACAATCAATGGC
TGGAATGCCATCGTGCTGCAGTTCCTGTTTGTGGCGCGGCAGGCGACATG
TCTCCTCGCACTCCTCCTTCGACTTGAATTTGTTGCGATTTGTATCACAA
CGATCCGACCAATAGATGGCACACTGGTCACTCACATGGTCGTAGTACCA
GAAGTTGGCCACATCGTTATCCCGACACGGACTGTCGGTCAGCTCGTCGT
AGCAGAAGCCGGGAACAATGGTATCGCAGCTAGGATTGGTGCAGTTCACC
TCCTCGTGCAGCTTGATGTGTCGACAGGGATCCTGGCCGTCATCATTGGG
ATCCGTTACTCCGTACACCTGGTTGTTATTCCACACCTTGCGAATACGTT
GCCGCTTTCCATGTCCACCGCATGGCCCCATGCACGGCGAGAAATCCGAC
CATGGAGTGACCCCGCAAACCGGTGGTATGTAATCCTCCCGATGCTGACT
GTAACTCTCGAAGTTGCGGAATATGGAGCGTTTCTC

BO07777.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-PA 2622 CG17739-RA 1702..2619 936..19 4590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2830 CG17739-RA 1737..2654 936..19 4590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12309319..12310236 936..19 4590 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:54:01 has no hits.

BO07777.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:54 Download gff for BO07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1702..2622 16..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:24 Download gff for BO07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1702..2622 16..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:20 Download gff for BO07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 1737..2658 15..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:05 Download gff for BO07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 1737..2658 15..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:05 Download gff for BO07777.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12309319..12310240 15..936 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:20 Download gff for BO07777.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8196824..8197745 15..936 99   Minus

BO07777.5prime Sequence

945 bp (780 high quality bases) assembled on 2006-01-06

> BO07777.5prime
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTCGCGTCGACTCCCACCACCATTTGATCTCCCT
CGTATCAATGGTGGATCCCTCTCCAGACTGGATCGTTGGTGTATC

BO07777.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-PA 2622 CG17739-RA 1..929 17..945 4620 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2830 CG17739-RA 36..964 17..945 4630 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12307558..12307947 194..583 1950 100 Plus
2R 25286936 2R 12307999..12308362 582..945 1805 99.7 Plus
2R 25286936 2R 12307288..12307465 17..194 890 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:54:47 has no hits.

BO07777.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:55 Download gff for BO07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1..929 17..945 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:25 Download gff for BO07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-PA 1..929 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:25 Download gff for BO07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 28..964 8..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:16 Download gff for BO07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 28..964 8..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:16 Download gff for BO07777.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12307280..12307465 8..194 97 -> Plus
2R 12307559..12307947 195..583 100 -> Plus
2R 12308001..12308362 584..945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:25 Download gff for BO07777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8194785..8194970 8..194 97 -> Plus
arm_2R 8195064..8195452 195..583 100 -> Plus
arm_2R 8195506..8195867 584..945 99   Plus

BO07777.complete Sequence

2653 bp (2653 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630926

> BO07777.complete
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTCGCGTCGACTCCAACCACCATTTGATCTCCCT
CGTATCAATGGTGGATCCCTCTCCAGACTGGATCGTTGGTGTATCCGGCC
TCGAGCTATGTCTGCCCAACTGTTCCTGGGTGGAGAACAAGGTGCACAAC
CTATATCCCTGGGATGCGGGCACCGATAGTGGTCCATCATATATGTCCGC
TGACCAGCCACAGGTGCCTCCAGATGTTGTGCGCCGCATCAAATCAAATT
TCCCCAACGATCCCCGTTCGCCCTTTTATGATCCCACTGGTGCCCAGATG
AAGCCATTGGCCACCCTGCACATCAATCGAAGACGACTCTACGAAAAGAA
CTGCGAGTCCTCCGATTCGGAACAGGTACCGCCGGAGTGCGCCACAAACT
CGTGGTCCAGATGGGATGAATGCACCACAAAGTGCGGTCCCGGCAAGCAA
TACAGAATCCGAGAGTTCAAGAACCCTGCATTGGCTTCGCGTCATCGTTG
CAACAATGCCCTGCGTGAGGAGAAGAACTGCGTGGGACACAAGTGCGCTG
GCTTCAATGAGGAGACAGCTGAAGGCGGCGAGCCGGAGGTGGCGCCATCA
CCAGGTAGCAGCGACGATCCCCAGTGCGGTCTGTCTGACTGGTCGGAGTG
GTCTTCGTGCACCGTGACTTGTGGAACCGGCGAAATGACCCGATCCCGAC
ACTATCTAAACAAGAAGGCCAAGAAGAAGTGCCAGAAGGCAAGCAGGGCG
CGTCTGCATGAGACCAAGATTTGCGAGGCAATGGAATGCGGTGGGGACAT
CGAGAACGAAGGTGGTGCTGGGGAACCGGAGGAGGAACAGGCCGGTGGCG
ACGGAGGTGGATCCGCTGAGAAACGCTCCATATTCCGCAACTTCGAGAGT
TACAGTCAGCATCGGGAGGATTACATACCACCGGTTTGCGGGGTCACTCC
ATGGTCGGATTTCTCGCCGTGCATGGGGCCATGCGGTGGACATGGAAAGC
GGCAACGTATTCGCAAGGTGTGGAATAACAACCAGGTGTACGGAGTAACG
GATCCCAATGATGACGGCCAGGATCCCTGTCGACACATCAAGCTGCACGA
GGAGGTGAACTGCACCAATCCTAGCTGCGATACCATTGTTCCCGGCTTCT
GCTACGACGAGCTGACCGACAGTCCGTGTCGGGATAACGATGTGGCCAAC
TTCTGGTACTACGACCATGTGAGTGACCAGTGTGCCATCTATTGGTCGGA
TCGTTGTGATACAAATCGCAACAAATTCAAGTCGAAGGAGGAGTGCGAGG
AGACATGTCGCCTGCCGCGCCACAAACAGGAACTGCAGCACGATGGCATT
CCAGCCATTGATTGTCTCGTCTCTGACTGGGTTTCCCACAGTTGCAACGC
CTCCTGCGGCGATGGCTTCCAATTGCGAACGCGTCGGGTGCTCCGTACTC
CGAAGTATGGAGGCAAGCCATGTCCCAAGCACCTGGTACGTTTGGATCGC
TGCTACCAGCGGTGCGATGACATGTACTCAATCAGTGGACGGGGATTTGG
AGAGCGAAGGCATGTGGTAAGAGCTCCGCAACCGGAACCGCAGGACGAGT
GTCGCTACTCGGAGTGGTCCGCCTGGACACCATGCACCGCCACGTGTGGC
GATAATGCCGTTCGCCAACGAACCCGAACCCTAATGAACACCGATCTGAG
CTACAAGTGCAAGGATCGCGTCCGCATGGAAAAGTGCGTGATGATGCCTT
GCCAGCTGACCAGCAACGATGATCCAGAGCGGTGGGCAAGCTTTCTAGAC
CAT

BO07777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2622 CG17739-PA 1..2619 17..2635 13095 100 Plus
CG30203-RB 2775 CG30203-PB 988..1148 1004..1164 220 75.8 Plus
CG30046-RC 2520 CG30046-PC 931..1091 917..1077 205 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-RA 2830 CG17739-RA 36..2654 17..2635 13095 100 Plus
CG30203-RB 2877 CG30203-RB 1024..1184 1004..1164 220 75.8 Plus
CG30046-RC 2986 CG30046-RC 1002..1162 917..1077 205 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12308936..12310236 1335..2635 6490 99.9 Plus
2R 25286936 2R 12307999..12308462 582..1045 2320 100 Plus
2R 25286936 2R 12307558..12307947 194..583 1950 100 Plus
2R 25286936 2R 12307288..12307465 17..194 890 100 Plus
2R 25286936 2R 12308518..12308690 1045..1217 865 100 Plus
2R 25286936 2R 12308755..12308876 1218..1339 610 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:39:23 has no hits.

BO07777.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:13 Download gff for BO07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 1..2622 17..2638 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:59 Download gff for BO07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 32..2662 8..2639 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:43 Download gff for BO07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 36..2654 17..2637 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:14 Download gff for BO07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 32..2662 8..2639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:49 Download gff for BO07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG17739-RA 36..2654 17..2637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:49 Download gff for BO07777.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12307288..12307465 17..194 100 -> Plus
2R 12307559..12307947 195..583 100 -> Plus
2R 12308001..12308462 584..1045 100 -> Plus
2R 12308519..12308690 1046..1217 100 -> Plus
2R 12308755..12308876 1218..1339 100 -> Plus
2R 12308941..12310236 1340..2637 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:43 Download gff for BO07777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8194793..8194970 17..194 100 -> Plus
arm_2R 8195064..8195452 195..583 100 -> Plus
arm_2R 8195506..8195967 584..1045 100 -> Plus
arm_2R 8196024..8196195 1046..1217 100 -> Plus
arm_2R 8196260..8196381 1218..1339 100 -> Plus
arm_2R 8196446..8197741 1340..2637 99   Plus

BO07777.pep Sequence

Translation from 16 to 2653

> BO07777.pep
MKALEGFTILLALVGVIPRIEGCIRVPPGVTAAKSPVDDNYVLSVNGNTQ
SYVPGQRYNVSLSAFSGLSFISFMLALDLESGDGDGDANALGTWEIADLA
ETRFSPRCPNLVENTNTNVKTRVDVFWVAPSSPGQGCILLRATVMQHRDV
WFMDDGFLTKRMCEEEVDDIDTQPSIVDPCCACDEAKYELTFEGKWSRHT
HPKDFPANSWRTRFSDIIGASHTLDYRFWQYGELASEGLREVAEHGSTRT
LESELKDQSEHIRTIIKARGIAYPNVTGKTFAVFRVDSNHHLISLVSMVD
PSPDWIVGVSGLELCLPNCSWVENKVHNLYPWDAGTDSGPSYMSADQPQV
PPDVVRRIKSNFPNDPRSPFYDPTGAQMKPLATLHINRRRLYEKNCESSD
SEQVPPECATNSWSRWDECTTKCGPGKQYRIREFKNPALASRHRCNNALR
EEKNCVGHKCAGFNEETAEGGEPEVAPSPGSSDDPQCGLSDWSEWSSCTV
TCGTGEMTRSRHYLNKKAKKKCQKASRARLHETKICEAMECGGDIENEGG
AGEPEEEQAGGDGGGSAEKRSIFRNFESYSQHREDYIPPVCGVTPWSDFS
PCMGPCGGHGKRQRIRKVWNNNQVYGVTDPNDDGQDPCRHIKLHEEVNCT
NPSCDTIVPGFCYDELTDSPCRDNDVANFWYYDHVSDQCAIYWSDRCDTN
RNKFKSKEECEETCRLPRHKQELQHDGIPAIDCLVSDWVSHSCNASCGDG
FQLRTRRVLRTPKYGGKPCPKHLVRLDRCYQRCDDMYSISGRGFGERRHV
VRAPQPEPQDECRYSEWSAWTPCTATCGDNAVRQRTRTLMNTDLSYKCKD
RVRMEKCVMMPCQLTSNDDPERWASFLDH

BO07777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17739-PA 873 CG17739-PA 1..873 1..873 4859 100 Plus
CG30046-PC 839 CG30046-PC 12..789 11..717 1661 44.1 Plus
CG30046-PB 839 CG30046-PB 12..789 11..717 1661 44.1 Plus
CG30203-PB 924 CG30203-PB 19..781 23..722 1628 42.7 Plus
fat-spondin-PA 763 CG6953-PA 3..758 5..779 1139 34.1 Plus