Clone Sequence Records
BO07777.3prime Sequence
936 bp (769 high quality bases) assembled on 2006-01-06
> BO07777.3prime
ATGGTCTAGAAAGCTTGCCCACCGCTCTGGATCATCGTTGCTGGTCAGCT
GGCAAGGCATCATCACGCACTTTTCCATGCGGACGCGATCCTTGCACTTG
TAGCTCAGATCGGTGTTCATTAGGGTTCGGGTTCGTTGGCGAACGGCATT
ATCGCCACACGTGGCGGTGCATGGTGTCCAGGCGGACCACTCCGAGTAGC
GACACTCGTCCTGCGGTTCCGGTTGCGGAGCTCTTACCACATGCCTTCGC
TCTCCAAATCCCCGTCCACTGATTGAGTACATGTCATCGCACCGCTGGTA
GCAGCGATCCAAACGTACCAGGTGCTTGGGACATGGCTTGCCTCCATACT
TCGGAGTACGGAGCACCCGACGCGTTCGCAATTGGAAGCCATCGCCGCAG
GAGGCGTTGCAACTGTGGGAAACCCAGTCAGAGACGAGACAATCAATGGC
TGGAATGCCATCGTGCTGCAGTTCCTGTTTGTGGCGCGGCAGGCGACATG
TCTCCTCGCACTCCTCCTTCGACTTGAATTTGTTGCGATTTGTATCACAA
CGATCCGACCAATAGATGGCACACTGGTCACTCACATGGTCGTAGTACCA
GAAGTTGGCCACATCGTTATCCCGACACGGACTGTCGGTCAGCTCGTCGT
AGCAGAAGCCGGGAACAATGGTATCGCAGCTAGGATTGGTGCAGTTCACC
TCCTCGTGCAGCTTGATGTGTCGACAGGGATCCTGGCCGTCATCATTGGG
ATCCGTTACTCCGTACACCTGGTTGTTATTCCACACCTTGCGAATACGTT
GCCGCTTTCCATGTCCACCGCATGGCCCCATGCACGGCGAGAAATCCGAC
CATGGAGTGACCCCGCAAACCGGTGGTATGTAATCCTCCCGATGCTGACT
GTAACTCTCGAAGTTGCGGAATATGGAGCGTTTCTC
BO07777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-PA | 2622 | CG17739-RA | 1702..2619 | 936..19 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2830 | CG17739-RA | 1737..2654 | 936..19 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12309319..12310236 | 936..19 | 4590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:54:01 has no hits.
BO07777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:54 Download gff for
BO07777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1702..2622 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:24 Download gff for
BO07777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1702..2622 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:20 Download gff for
BO07777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 1737..2658 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:05 Download gff for
BO07777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 1737..2658 | 15..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:05 Download gff for
BO07777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12309319..12310240 | 15..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:20 Download gff for
BO07777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8196824..8197745 | 15..936 | 99 | | Minus |
BO07777.5prime Sequence
945 bp (780 high quality bases) assembled on 2006-01-06
> BO07777.5prime
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTCGCGTCGACTCCCACCACCATTTGATCTCCCT
CGTATCAATGGTGGATCCCTCTCCAGACTGGATCGTTGGTGTATC
BO07777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-PA | 2622 | CG17739-RA | 1..929 | 17..945 | 4620 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2830 | CG17739-RA | 36..964 | 17..945 | 4630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12307558..12307947 | 194..583 | 1950 | 100 | Plus |
2R | 25286936 | 2R | 12307999..12308362 | 582..945 | 1805 | 99.7 | Plus |
2R | 25286936 | 2R | 12307288..12307465 | 17..194 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:54:47 has no hits.
BO07777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:28:55 Download gff for
BO07777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:25 Download gff for
BO07777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:25 Download gff for
BO07777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 28..964 | 8..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:16 Download gff for
BO07777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 28..964 | 8..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:16 Download gff for
BO07777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12307280..12307465 | 8..194 | 97 | -> | Plus |
2R | 12307559..12307947 | 195..583 | 100 | -> | Plus |
2R | 12308001..12308362 | 584..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:25 Download gff for
BO07777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8194785..8194970 | 8..194 | 97 | -> | Plus |
arm_2R | 8195064..8195452 | 195..583 | 100 | -> | Plus |
arm_2R | 8195506..8195867 | 584..945 | 99 | | Plus |
BO07777.complete Sequence
2653 bp (2653 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630926
> BO07777.complete
GAAGTTATCAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCG
CATTAGTGGGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCG
GGAGTCACAGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGT
AAACGGAAATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCC
TCAGTGCATTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGAT
TTGGAGAGTGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGA
GATCGCCGATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTG
TCGAGAATACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTG
GCTCCATCGAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGAT
GCAGCATCGAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTA
TGTGCGAGGAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGAT
CCGTGCTGTGCCTGTGACGAGGCCAAATATGAGCTTACCTTCGAAGGCAA
GTGGTCGCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCA
CCAGATTCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTC
TGGCAGTATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCA
TGGCTCCACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACA
TTCGCACGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGC
AAAACATTTGCCGTTTTTCGCGTCGACTCCAACCACCATTTGATCTCCCT
CGTATCAATGGTGGATCCCTCTCCAGACTGGATCGTTGGTGTATCCGGCC
TCGAGCTATGTCTGCCCAACTGTTCCTGGGTGGAGAACAAGGTGCACAAC
CTATATCCCTGGGATGCGGGCACCGATAGTGGTCCATCATATATGTCCGC
TGACCAGCCACAGGTGCCTCCAGATGTTGTGCGCCGCATCAAATCAAATT
TCCCCAACGATCCCCGTTCGCCCTTTTATGATCCCACTGGTGCCCAGATG
AAGCCATTGGCCACCCTGCACATCAATCGAAGACGACTCTACGAAAAGAA
CTGCGAGTCCTCCGATTCGGAACAGGTACCGCCGGAGTGCGCCACAAACT
CGTGGTCCAGATGGGATGAATGCACCACAAAGTGCGGTCCCGGCAAGCAA
TACAGAATCCGAGAGTTCAAGAACCCTGCATTGGCTTCGCGTCATCGTTG
CAACAATGCCCTGCGTGAGGAGAAGAACTGCGTGGGACACAAGTGCGCTG
GCTTCAATGAGGAGACAGCTGAAGGCGGCGAGCCGGAGGTGGCGCCATCA
CCAGGTAGCAGCGACGATCCCCAGTGCGGTCTGTCTGACTGGTCGGAGTG
GTCTTCGTGCACCGTGACTTGTGGAACCGGCGAAATGACCCGATCCCGAC
ACTATCTAAACAAGAAGGCCAAGAAGAAGTGCCAGAAGGCAAGCAGGGCG
CGTCTGCATGAGACCAAGATTTGCGAGGCAATGGAATGCGGTGGGGACAT
CGAGAACGAAGGTGGTGCTGGGGAACCGGAGGAGGAACAGGCCGGTGGCG
ACGGAGGTGGATCCGCTGAGAAACGCTCCATATTCCGCAACTTCGAGAGT
TACAGTCAGCATCGGGAGGATTACATACCACCGGTTTGCGGGGTCACTCC
ATGGTCGGATTTCTCGCCGTGCATGGGGCCATGCGGTGGACATGGAAAGC
GGCAACGTATTCGCAAGGTGTGGAATAACAACCAGGTGTACGGAGTAACG
GATCCCAATGATGACGGCCAGGATCCCTGTCGACACATCAAGCTGCACGA
GGAGGTGAACTGCACCAATCCTAGCTGCGATACCATTGTTCCCGGCTTCT
GCTACGACGAGCTGACCGACAGTCCGTGTCGGGATAACGATGTGGCCAAC
TTCTGGTACTACGACCATGTGAGTGACCAGTGTGCCATCTATTGGTCGGA
TCGTTGTGATACAAATCGCAACAAATTCAAGTCGAAGGAGGAGTGCGAGG
AGACATGTCGCCTGCCGCGCCACAAACAGGAACTGCAGCACGATGGCATT
CCAGCCATTGATTGTCTCGTCTCTGACTGGGTTTCCCACAGTTGCAACGC
CTCCTGCGGCGATGGCTTCCAATTGCGAACGCGTCGGGTGCTCCGTACTC
CGAAGTATGGAGGCAAGCCATGTCCCAAGCACCTGGTACGTTTGGATCGC
TGCTACCAGCGGTGCGATGACATGTACTCAATCAGTGGACGGGGATTTGG
AGAGCGAAGGCATGTGGTAAGAGCTCCGCAACCGGAACCGCAGGACGAGT
GTCGCTACTCGGAGTGGTCCGCCTGGACACCATGCACCGCCACGTGTGGC
GATAATGCCGTTCGCCAACGAACCCGAACCCTAATGAACACCGATCTGAG
CTACAAGTGCAAGGATCGCGTCCGCATGGAAAAGTGCGTGATGATGCCTT
GCCAGCTGACCAGCAACGATGATCCAGAGCGGTGGGCAAGCTTTCTAGAC
CAT
BO07777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2622 | CG17739-PA | 1..2619 | 17..2635 | 13095 | 100 | Plus |
CG30203-RB | 2775 | CG30203-PB | 988..1148 | 1004..1164 | 220 | 75.8 | Plus |
CG30046-RC | 2520 | CG30046-PC | 931..1091 | 917..1077 | 205 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-RA | 2830 | CG17739-RA | 36..2654 | 17..2635 | 13095 | 100 | Plus |
CG30203-RB | 2877 | CG30203-RB | 1024..1184 | 1004..1164 | 220 | 75.8 | Plus |
CG30046-RC | 2986 | CG30046-RC | 1002..1162 | 917..1077 | 205 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12308936..12310236 | 1335..2635 | 6490 | 99.9 | Plus |
2R | 25286936 | 2R | 12307999..12308462 | 582..1045 | 2320 | 100 | Plus |
2R | 25286936 | 2R | 12307558..12307947 | 194..583 | 1950 | 100 | Plus |
2R | 25286936 | 2R | 12307288..12307465 | 17..194 | 890 | 100 | Plus |
2R | 25286936 | 2R | 12308518..12308690 | 1045..1217 | 865 | 100 | Plus |
2R | 25286936 | 2R | 12308755..12308876 | 1218..1339 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:39:23 has no hits.
BO07777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:13 Download gff for
BO07777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 1..2622 | 17..2638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:59 Download gff for
BO07777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 32..2662 | 8..2639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:43 Download gff for
BO07777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 36..2654 | 17..2637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:14 Download gff for
BO07777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 32..2662 | 8..2639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:49 Download gff for
BO07777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17739-RA | 36..2654 | 17..2637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:49 Download gff for
BO07777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12307288..12307465 | 17..194 | 100 | -> | Plus |
2R | 12307559..12307947 | 195..583 | 100 | -> | Plus |
2R | 12308001..12308462 | 584..1045 | 100 | -> | Plus |
2R | 12308519..12308690 | 1046..1217 | 100 | -> | Plus |
2R | 12308755..12308876 | 1218..1339 | 100 | -> | Plus |
2R | 12308941..12310236 | 1340..2637 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:43 Download gff for
BO07777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8194793..8194970 | 17..194 | 100 | -> | Plus |
arm_2R | 8195064..8195452 | 195..583 | 100 | -> | Plus |
arm_2R | 8195506..8195967 | 584..1045 | 100 | -> | Plus |
arm_2R | 8196024..8196195 | 1046..1217 | 100 | -> | Plus |
arm_2R | 8196260..8196381 | 1218..1339 | 100 | -> | Plus |
arm_2R | 8196446..8197741 | 1340..2637 | 99 | | Plus |
BO07777.pep Sequence
Translation from 16 to 2653
> BO07777.pep
MKALEGFTILLALVGVIPRIEGCIRVPPGVTAAKSPVDDNYVLSVNGNTQ
SYVPGQRYNVSLSAFSGLSFISFMLALDLESGDGDGDANALGTWEIADLA
ETRFSPRCPNLVENTNTNVKTRVDVFWVAPSSPGQGCILLRATVMQHRDV
WFMDDGFLTKRMCEEEVDDIDTQPSIVDPCCACDEAKYELTFEGKWSRHT
HPKDFPANSWRTRFSDIIGASHTLDYRFWQYGELASEGLREVAEHGSTRT
LESELKDQSEHIRTIIKARGIAYPNVTGKTFAVFRVDSNHHLISLVSMVD
PSPDWIVGVSGLELCLPNCSWVENKVHNLYPWDAGTDSGPSYMSADQPQV
PPDVVRRIKSNFPNDPRSPFYDPTGAQMKPLATLHINRRRLYEKNCESSD
SEQVPPECATNSWSRWDECTTKCGPGKQYRIREFKNPALASRHRCNNALR
EEKNCVGHKCAGFNEETAEGGEPEVAPSPGSSDDPQCGLSDWSEWSSCTV
TCGTGEMTRSRHYLNKKAKKKCQKASRARLHETKICEAMECGGDIENEGG
AGEPEEEQAGGDGGGSAEKRSIFRNFESYSQHREDYIPPVCGVTPWSDFS
PCMGPCGGHGKRQRIRKVWNNNQVYGVTDPNDDGQDPCRHIKLHEEVNCT
NPSCDTIVPGFCYDELTDSPCRDNDVANFWYYDHVSDQCAIYWSDRCDTN
RNKFKSKEECEETCRLPRHKQELQHDGIPAIDCLVSDWVSHSCNASCGDG
FQLRTRRVLRTPKYGGKPCPKHLVRLDRCYQRCDDMYSISGRGFGERRHV
VRAPQPEPQDECRYSEWSAWTPCTATCGDNAVRQRTRTLMNTDLSYKCKD
RVRMEKCVMMPCQLTSNDDPERWASFLDH
BO07777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17739-PA | 873 | CG17739-PA | 1..873 | 1..873 | 4859 | 100 | Plus |
CG30046-PC | 839 | CG30046-PC | 12..789 | 11..717 | 1661 | 44.1 | Plus |
CG30046-PB | 839 | CG30046-PB | 12..789 | 11..717 | 1661 | 44.1 | Plus |
CG30203-PB | 924 | CG30203-PB | 19..781 | 23..722 | 1628 | 42.7 | Plus |
fat-spondin-PA | 763 | CG6953-PA | 3..758 | 5..779 | 1139 | 34.1 | Plus |